Wall clock time and date at job start Tue Mar 31 2020 10:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86796 * 120.00116 * 2 1 4 4 H 1.48502 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47382 * 300.00127 * 3 2 1 6 6 H 1.48500 * 109.47074 * 60.00064 * 3 2 1 7 7 C 1.38810 * 119.99596 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99463 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00292 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47452 * 35.00336 * 10 9 7 12 12 C 1.53005 * 109.47367 * 275.00256 * 10 9 7 13 13 C 1.52998 * 109.47340 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47164 * 59.99924 * 13 12 10 15 15 C 1.53008 * 109.47363 * 300.00049 * 14 13 12 16 16 H 1.09001 * 109.46796 * 300.00526 * 15 14 13 17 17 N 1.46497 * 109.47335 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99525 * 84.99977 * 17 15 14 19 19 O 1.21283 * 120.00463 * 0.02562 * 18 17 15 20 20 C 1.50700 * 119.99675 * 179.72583 * 18 17 15 21 21 C 1.53004 * 109.47208 * 180.27843 * 20 18 17 22 22 C 1.53777 * 113.61458 * 274.13717 * 21 20 18 23 23 C 1.53952 * 87.01936 * 220.04538 * 22 21 20 24 24 F 1.39898 * 113.53759 * 270.81081 * 23 22 21 25 25 F 1.39903 * 113.66406 * 139.92995 * 23 22 21 26 26 C 1.53777 * 87.11184 * 25.36399 * 23 22 21 27 27 C 1.52998 * 109.47019 * 155.00709 * 10 9 7 28 28 H 0.97003 * 119.99518 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99656 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.46937 * 60.00374 * 12 10 9 31 31 H 1.08994 * 109.47191 * 300.00400 * 12 10 9 32 32 H 1.09008 * 109.46859 * 300.00217 * 13 12 10 33 33 H 1.08994 * 109.47717 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47238 * 180.02562 * 14 13 12 35 35 H 1.08994 * 109.46965 * 60.00198 * 14 13 12 36 36 H 0.97000 * 120.00580 * 265.00723 * 17 15 14 37 37 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 38 38 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 39 39 H 1.09000 * 112.84625 * 45.32990 * 21 20 18 40 40 H 1.09002 * 113.61527 * 334.56570 * 22 21 20 41 41 H 1.09002 * 113.61599 * 105.46552 * 22 21 20 42 42 H 1.09002 * 113.61667 * 220.09237 * 26 23 22 43 43 H 1.08998 * 113.62051 * 89.18608 * 26 23 22 44 44 H 1.09002 * 109.47313 * 59.99542 * 27 10 9 45 45 H 1.09006 * 109.47016 * 300.00138 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9692 -3.5508 0.5872 12 6 2.4209 -4.0350 -1.4392 13 6 3.1854 -5.3603 -1.4404 14 6 2.3081 -6.4556 -0.8308 15 6 1.9453 -6.0775 0.6067 16 1 2.8564 -5.9719 1.1956 17 7 1.1048 -7.1260 1.1901 18 6 1.6740 -8.2090 1.7556 19 8 2.8818 -8.3152 1.7819 20 6 0.8096 -9.2846 2.3613 21 6 1.6982 -10.3893 2.9367 22 6 2.1062 -11.4525 1.9033 23 6 1.8900 -12.4979 3.0126 24 9 3.0326 -12.7397 3.7827 25 9 1.2761 -13.6727 2.5651 26 6 0.9135 -11.4992 3.6559 27 6 1.1813 -4.7524 0.6080 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3880 -0.0005 30 1 3.0456 -3.2544 -1.8735 31 1 1.5098 -4.1409 -2.0280 32 1 4.0965 -5.2547 -0.8514 33 1 3.4443 -5.6295 -2.4643 34 1 2.8529 -7.3997 -0.8313 35 1 1.3971 -6.5612 -1.4198 36 1 0.1388 -7.0410 1.1694 37 1 0.2010 -8.8562 3.1578 38 1 0.1598 -9.7041 1.5933 39 1 2.5351 -10.0002 3.5165 40 1 1.4061 -11.5457 1.0730 41 1 3.1428 -11.3689 1.5768 42 1 0.9887 -11.4532 4.7423 43 1 -0.1132 -11.6051 3.3057 44 1 0.2701 -4.8584 0.0191 45 1 0.9227 -4.4830 1.6321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981179334.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:43 Heat of formation + Delta-G solvation = -128.694557 kcal Electronic energy + Delta-G solvation = -26343.915761 eV Core-core repulsion = 22224.904558 eV Total energy + Delta-G solvation = -4119.011203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.11439 -47.45665 -40.25516 -38.62646 -37.57253 -34.69534 -33.38154 -31.19416 -30.85769 -28.94932 -27.73397 -26.66221 -24.02744 -23.63087 -22.03795 -21.39431 -20.38554 -20.22864 -19.42173 -17.80411 -17.40986 -16.93249 -16.88728 -16.55011 -16.16418 -15.67108 -14.87740 -14.61516 -14.42569 -14.32681 -13.92754 -13.81573 -13.73727 -13.66643 -13.45119 -13.17933 -12.99347 -12.91729 -12.60104 -12.18466 -12.06535 -11.66108 -11.55556 -11.27682 -11.02074 -10.96770 -10.90984 -10.78651 -10.75335 -10.37444 -10.30200 -10.19899 -10.06049 -9.72464 -9.58631 -9.01626 -8.89169 -6.98729 -5.79559 -3.08123 2.55422 3.03436 3.13578 3.41537 3.43192 3.47830 3.49583 3.89205 3.94883 4.00718 4.55866 4.58288 4.78110 4.92120 4.97378 4.99264 5.02533 5.09780 5.16091 5.28072 5.30731 5.38939 5.42647 5.48104 5.57816 5.66295 5.72420 5.84381 5.86909 5.94585 6.00036 6.11241 6.27379 6.30525 6.49053 6.51025 6.60087 6.70152 6.94096 7.09689 7.46327 7.69163 8.16439 8.39286 9.50568 10.07627 10.42293 11.43234 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.033124 B = 0.002109 C = 0.002068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.116365 B =13270.946571 C =13538.275372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.048 0.952 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.123 4.123 15 C 0.148 3.852 16 H 0.087 0.913 17 N -0.724 5.724 18 C 0.511 3.489 19 O -0.540 6.540 20 C -0.131 4.131 21 C -0.087 4.087 22 C -0.158 4.158 23 C 0.251 3.749 24 F -0.180 7.180 25 F -0.193 7.193 26 C -0.162 4.162 27 C -0.129 4.129 28 H 0.254 0.746 29 H 0.383 0.617 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.399 0.601 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.114 0.886 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.113 0.887 44 H 0.064 0.936 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 -24.426 4.188 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.066 0.934 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.161 4.161 15 C 0.044 3.956 16 H 0.105 0.895 17 N -0.375 5.375 18 C 0.297 3.703 19 O -0.417 6.417 20 C -0.171 4.171 21 C -0.106 4.106 22 C -0.196 4.196 23 C 0.215 3.785 24 F -0.160 7.160 25 F -0.174 7.174 26 C -0.200 4.200 27 C -0.168 4.168 28 H 0.064 0.936 29 H 0.216 0.784 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.233 0.767 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.083 0.917 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.152 -24.378 4.241 24.745 hybrid contribution -0.354 0.807 -0.075 0.884 sum -0.202 -23.571 4.165 23.937 Atomic orbital electron populations 1.69672 1.05098 1.25518 1.57947 1.24743 0.95531 0.97703 1.03104 0.86130 0.78840 0.84155 0.77169 1.20530 1.21897 1.21896 1.19290 0.91052 0.84047 1.42331 0.91091 1.42410 1.05741 0.99733 1.88605 1.20098 0.94112 0.85540 0.92969 0.93384 1.22291 0.99709 0.95243 1.00477 1.21486 0.98538 0.95397 0.99945 1.21869 1.00039 0.98787 0.95454 1.21022 0.94502 0.86161 0.93961 0.89494 1.46201 1.10511 1.21244 1.59508 1.20546 0.89043 0.82755 0.77984 1.90713 1.14737 1.78098 1.58110 1.21631 0.98463 0.95089 1.01918 1.22150 0.98798 0.92719 0.96906 1.24197 1.05731 0.92385 0.97277 1.22159 0.82643 0.80906 0.92818 1.93024 1.51443 1.95216 1.76366 1.93007 1.82491 1.52370 1.89561 1.24190 0.99787 0.93252 1.02801 1.22079 0.99335 0.93407 1.01967 0.93598 0.78351 0.91896 0.92683 0.92196 0.92535 0.92255 0.92128 0.76695 0.88027 0.88431 0.86748 0.87191 0.88416 0.88639 0.86858 0.91748 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 2 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.72 -17.53 5.12 -53.42 -0.27 -17.80 16 10 C 0.18 3.46 2.77 -67.93 -0.19 3.28 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.35 5.50 -26.73 -0.15 -2.50 16 13 C -0.11 -1.61 5.92 -26.73 -0.16 -1.76 16 14 C -0.12 -1.57 5.49 -26.73 -0.15 -1.72 16 15 C 0.15 1.93 2.45 -67.95 -0.17 1.77 16 16 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 17 N -0.72 -7.37 5.08 -53.83 -0.27 -7.64 16 18 C 0.51 5.37 7.79 -10.98 -0.09 5.28 16 19 O -0.54 -7.84 15.45 5.55 0.09 -7.75 16 20 C -0.13 -0.81 5.52 -27.88 -0.15 -0.97 16 21 C -0.09 -0.62 3.09 -89.81 -0.28 -0.89 16 22 C -0.16 -1.18 7.43 -25.83 -0.19 -1.37 16 23 C 0.25 2.07 3.28 -25.83 -0.08 1.99 16 24 F -0.18 -1.85 17.38 2.25 0.04 -1.81 16 25 F -0.19 -1.84 17.41 2.25 0.04 -1.80 16 26 C -0.16 -0.92 7.43 -25.92 -0.19 -1.11 16 27 C -0.13 -1.94 4.85 -26.75 -0.13 -2.07 16 28 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.38 9.80 7.80 -40.82 -0.32 9.49 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 3.04 8.60 -40.82 -0.35 2.69 16 37 H 0.10 0.46 8.14 -51.92 -0.42 0.03 16 38 H 0.10 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.11 1.02 7.73 -51.93 -0.40 0.62 16 40 H 0.11 0.65 7.92 -51.93 -0.41 0.24 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.11 0.44 8.10 -51.93 -0.42 0.02 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -32.16 370.73 -8.58 -40.75 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.32 Total: 7.49 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -2.17 Total: -7.17 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.18 Total: -52.45 kcal Atomic # 8 Polarization: -7.84 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.16 -8.58 -40.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981179334.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.948 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds