Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99870 * 2 1 4 4 H 1.48496 * 109.47097 * 240.00111 * 3 2 1 5 5 H 1.48503 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47468 * 120.00041 * 3 2 1 7 7 C 1.38806 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00403 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99781 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00107 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47270 * 324.99732 * 10 9 7 12 12 C 1.53000 * 109.47303 * 84.99759 * 10 9 7 13 13 C 1.53000 * 109.47048 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47222 * 300.00184 * 13 12 10 15 15 C 1.52996 * 109.47002 * 60.00178 * 14 13 12 16 16 H 1.09002 * 109.46710 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47528 * 60.00061 * 15 14 13 18 18 C 1.34778 * 120.00000 * 84.99613 * 17 15 14 19 19 O 1.21278 * 119.99842 * 0.02562 * 18 17 15 20 20 C 1.50703 * 119.99651 * 180.02562 * 18 17 15 21 21 C 1.53003 * 109.46728 * 180.02562 * 20 18 17 22 22 C 1.53786 * 113.61503 * 85.86370 * 21 20 18 23 23 C 1.54049 * 86.98426 * 140.01654 * 22 21 20 24 24 F 1.39901 * 113.61989 * 220.02457 * 23 22 21 25 25 F 1.39899 * 113.60991 * 89.11698 * 23 22 21 26 26 C 1.53781 * 113.61337 * 183.47164 * 21 20 18 27 27 C 1.53003 * 109.47116 * 299.99612 * 15 14 13 28 28 H 0.97006 * 119.99660 * 359.97438 * 1 2 3 29 29 H 0.97000 * 120.00354 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.46875 * 60.00702 * 12 10 9 31 31 H 1.08992 * 109.47382 * 300.00354 * 12 10 9 32 32 H 1.09002 * 109.47416 * 180.02562 * 13 12 10 33 33 H 1.08999 * 109.47368 * 60.00069 * 13 12 10 34 34 H 1.09004 * 109.46915 * 299.99713 * 14 13 12 35 35 H 1.09004 * 109.46745 * 180.02562 * 14 13 12 36 36 H 0.97005 * 119.99820 * 265.00318 * 17 15 14 37 37 H 1.09000 * 109.47223 * 60.00290 * 20 18 17 38 38 H 1.08997 * 109.47305 * 299.99950 * 20 18 17 39 39 H 1.09002 * 112.85017 * 314.66753 * 21 20 18 40 40 H 1.08992 * 113.61675 * 254.61398 * 22 21 20 41 41 H 1.09000 * 113.60973 * 25.51686 * 22 21 20 42 42 H 1.08999 * 113.61567 * 334.48261 * 26 21 20 43 43 H 1.08998 * 113.61196 * 105.38615 * 26 21 20 44 44 H 1.08998 * 109.46875 * 180.02562 * 27 15 14 45 45 H 1.08998 * 109.46861 * 300.00367 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9688 -3.5510 -0.5868 12 6 2.4221 -4.0342 1.4401 13 6 3.1865 -5.3596 1.4412 14 6 2.3088 -6.4552 0.8328 15 6 1.9449 -6.0776 -0.6045 16 1 1.3192 -6.8580 -1.0378 17 7 3.1688 -5.9361 -1.3971 18 6 3.7348 -7.0209 -1.9623 19 8 3.2307 -8.1140 -1.8152 20 6 4.9942 -6.8753 -2.7771 21 6 5.4236 -8.2469 -3.3017 22 6 4.7446 -8.6410 -4.6240 23 6 6.1058 -9.2179 -5.0569 24 9 6.4192 -8.9694 -6.3975 25 9 6.2879 -10.5567 -4.6941 26 6 6.7504 -8.2216 -4.0787 27 6 1.1804 -4.7523 -0.6057 28 1 -0.4850 0.8401 0.0004 29 1 0.3557 -2.3881 0.0023 30 1 1.5114 -4.1401 2.0296 31 1 3.0469 -3.2536 1.8737 32 1 3.4455 -5.6288 2.4653 33 1 4.0972 -5.2543 0.8516 34 1 1.3981 -6.5605 1.4225 35 1 2.8533 -7.3995 0.8341 36 1 3.5719 -5.0617 -1.5150 37 1 5.7854 -6.4608 -2.1523 38 1 4.8078 -6.2072 -3.6180 39 1 5.3789 -9.0246 -2.5392 40 1 3.9663 -9.3951 -4.5075 41 1 4.4225 -7.7876 -5.2207 42 1 6.9757 -7.2537 -4.5266 43 1 7.5903 -8.6374 -3.5222 44 1 0.9208 -4.4836 -1.6297 45 1 0.2698 -4.8577 -0.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981179337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = -125.953322 kcal Electronic energy + Delta-G solvation = -26797.356688 eV Core-core repulsion = 22678.464354 eV Total energy + Delta-G solvation = -4118.892334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.05946 -47.40212 -40.30425 -38.69724 -37.48112 -34.50023 -33.10828 -31.23393 -30.80586 -29.09981 -27.87281 -26.59291 -23.98927 -23.63109 -22.11674 -21.23453 -20.86206 -20.13479 -18.84878 -17.77051 -17.37836 -17.06754 -16.83891 -16.51405 -15.69530 -15.53071 -15.31654 -14.61736 -14.45770 -14.27822 -14.00616 -13.74971 -13.72501 -13.60874 -13.38953 -13.08605 -12.89893 -12.78514 -12.40443 -12.08318 -11.98502 -11.78092 -11.53347 -11.48335 -11.19313 -11.04567 -10.91476 -10.81832 -10.72234 -10.42299 -10.26416 -10.21838 -9.80623 -9.78980 -9.56767 -8.98218 -8.87454 -7.02297 -5.82390 -3.11647 2.63681 3.13598 3.20680 3.38836 3.43606 3.44883 3.49499 3.95683 4.02023 4.08533 4.52016 4.67334 4.86197 4.98533 5.05478 5.06742 5.07570 5.13123 5.15225 5.23411 5.37165 5.45174 5.46676 5.49026 5.54395 5.65153 5.72663 5.83406 5.93219 5.94075 6.02161 6.06846 6.21952 6.24892 6.45311 6.52742 6.63922 6.67183 6.89199 7.03824 7.56858 7.62589 8.24667 8.35995 9.47113 10.04614 10.38813 11.40052 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.017622 B = 0.002630 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.552504 B =10643.895551 C =11584.564916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.182 3.818 11 H 0.041 0.959 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.127 4.127 15 C 0.151 3.849 16 H 0.083 0.917 17 N -0.718 5.718 18 C 0.512 3.488 19 O -0.546 6.546 20 C -0.133 4.133 21 C -0.086 4.086 22 C -0.158 4.158 23 C 0.251 3.749 24 F -0.193 7.193 25 F -0.181 7.181 26 C -0.162 4.162 27 C -0.134 4.134 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.094 0.906 44 H 0.069 0.931 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.371 -16.817 -6.048 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.071 3.929 11 H 0.059 0.941 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.166 4.166 15 C 0.046 3.954 16 H 0.101 0.899 17 N -0.370 5.370 18 C 0.298 3.702 19 O -0.424 6.424 20 C -0.173 4.173 21 C -0.104 4.104 22 C -0.196 4.196 23 C 0.214 3.786 24 F -0.174 7.174 25 F -0.161 7.161 26 C -0.200 4.200 27 C -0.172 4.172 28 H 0.066 0.934 29 H 0.217 0.783 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.087 0.913 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.110 -17.452 -5.986 21.537 hybrid contribution 0.411 1.301 -0.076 1.367 sum 11.520 -16.151 -6.061 20.744 Atomic orbital electron populations 1.69650 1.05117 1.25827 1.57429 1.24742 0.95496 0.97695 1.02922 0.86293 0.78551 0.83648 0.77820 1.21272 1.21700 1.21286 1.19161 0.90883 0.84123 1.43031 0.91297 1.42420 1.05790 0.99692 1.88608 1.20136 0.93866 0.85964 0.92896 0.94098 1.22293 0.99798 0.95173 1.00511 1.21500 0.98442 0.95633 0.99704 1.21891 1.00551 0.98523 0.95586 1.20940 0.85309 0.98271 0.90844 0.89900 1.46245 1.28057 1.10452 1.52246 1.20527 0.85729 0.84469 0.79464 1.90685 1.64151 1.26062 1.61476 1.21636 0.96612 0.98030 1.00984 1.22137 0.93729 0.98125 0.96454 1.24215 0.95522 1.02824 0.96992 1.22193 0.99723 0.79050 0.77611 1.93008 1.94183 1.93701 1.36525 1.93017 1.96217 1.35750 1.91147 1.24194 0.99321 0.99943 0.96588 1.22130 0.99301 0.93619 1.02192 0.93418 0.78251 0.92582 0.92099 0.92910 0.92659 0.91235 0.92142 0.76056 0.88043 0.88289 0.86854 0.88477 0.87101 0.86789 0.88706 0.91272 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -16.96 5.12 -53.43 -0.27 -17.23 16 10 C 0.18 3.20 2.60 -67.93 -0.18 3.02 16 11 H 0.04 0.71 6.44 -51.93 -0.33 0.37 16 12 C -0.14 -2.26 5.50 -26.73 -0.15 -2.40 16 13 C -0.11 -1.51 5.77 -26.73 -0.15 -1.66 16 14 C -0.13 -1.61 5.60 -26.73 -0.15 -1.76 16 15 C 0.15 1.95 2.78 -67.93 -0.19 1.76 16 16 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 17 N -0.72 -8.17 4.23 -53.81 -0.23 -8.40 16 18 C 0.51 5.75 7.79 -10.98 -0.09 5.67 16 19 O -0.55 -7.97 15.45 5.56 0.09 -7.88 16 20 C -0.13 -0.98 5.53 -27.88 -0.15 -1.14 16 21 C -0.09 -0.67 3.09 -89.80 -0.28 -0.94 16 22 C -0.16 -1.30 7.44 -25.77 -0.19 -1.49 16 23 C 0.25 2.23 3.28 -25.78 -0.08 2.15 16 24 F -0.19 -1.99 17.41 2.25 0.04 -1.95 16 25 F -0.18 -1.94 17.38 2.25 0.04 -1.90 16 26 C -0.16 -1.05 7.43 -25.92 -0.19 -1.24 16 27 C -0.13 -1.99 5.08 -26.73 -0.14 -2.13 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.38 9.70 7.80 -40.82 -0.32 9.38 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.69 7.60 -51.93 -0.39 0.30 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.27 6.87 -40.82 -0.28 3.99 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.58 7.87 -51.93 -0.41 0.18 16 39 H 0.11 1.05 7.73 -51.93 -0.40 0.65 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.11 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.11 0.56 8.10 -51.93 -0.42 0.14 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 366.31 15.07 5.52 5.52 Total: -1.00 -30.97 366.31 -8.44 -39.40 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.14 Total: 9.51 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -2.18 Total: -7.07 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.22 Total: -52.25 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.88 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.08 Total: -3.85 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.97 -8.44 -39.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981179337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.552 kcal (2) G-P(sol) polarization free energy of solvation -30.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds