Wall clock time and date at job start Tue Mar 31 2020 11:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99926 * 2 1 4 4 H 1.48501 * 109.47363 * 270.00501 * 3 2 1 5 5 H 1.48505 * 109.47189 * 29.99992 * 3 2 1 6 6 H 1.48499 * 109.47016 * 150.00172 * 3 2 1 7 7 C 1.38808 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99585 * 194.62012 * 7 2 1 9 9 N 1.36937 * 120.00177 * 14.61591 * 7 2 1 10 10 C 1.43458 * 118.94068 * 204.95170 * 9 7 2 11 11 C 1.53737 * 107.94322 * 273.66879 * 10 9 7 12 12 C 1.47144 * 111.84950 * 281.64232 * 11 10 9 13 13 N 1.48214 * 110.34100 * 58.30960 * 12 11 10 14 14 C 1.34787 * 119.96864 * 102.49695 * 13 12 11 15 15 O 1.21282 * 119.99864 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00077 * 179.97438 * 14 13 12 17 17 C 1.52998 * 109.47047 * 179.97438 * 16 14 13 18 18 H 1.09000 * 110.66893 * 54.30055 * 17 16 14 19 19 C 1.54887 * 110.75411 * 177.53196 * 17 16 14 20 20 C 1.54270 * 104.19571 * 156.25583 * 19 17 16 21 21 C 1.53872 * 106.59743 * 336.39717 * 20 19 17 22 22 F 1.39900 * 110.03619 * 119.28018 * 21 20 19 23 23 F 1.39907 * 110.03063 * 240.71096 * 21 20 19 24 24 C 1.54466 * 106.68890 * 0.15258 * 21 20 19 25 25 C 1.43619 * 120.06504 * 282.51992 * 13 12 11 26 26 C 1.48851 * 118.93784 * 24.97058 * 9 7 2 27 27 H 0.97002 * 119.99654 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.76741 * 33.26917 * 10 9 7 29 29 H 1.08994 * 109.76605 * 154.04050 * 10 9 7 30 30 H 1.08998 * 108.99344 * 161.04101 * 11 10 9 31 31 H 1.09005 * 109.01707 * 42.25953 * 11 10 9 32 32 H 1.09000 * 109.32328 * 298.04440 * 12 11 10 33 33 H 1.09000 * 109.32812 * 178.57660 * 12 11 10 34 34 H 1.08997 * 109.47139 * 300.00290 * 16 14 13 35 35 H 1.09004 * 109.46764 * 60.00206 * 16 14 13 36 36 H 1.08998 * 110.48868 * 274.93922 * 19 17 16 37 37 H 1.09003 * 110.48481 * 37.45238 * 19 17 16 38 38 H 1.09003 * 110.02975 * 95.67124 * 20 19 17 39 39 H 1.08995 * 110.03527 * 217.05467 * 20 19 17 40 40 H 1.08999 * 110.40305 * 264.76501 * 24 21 20 41 41 H 1.08993 * 110.66653 * 142.05457 * 24 21 20 42 42 H 1.09005 * 108.87576 * 211.42496 * 25 13 12 43 43 H 1.08998 * 108.87029 * 329.85389 * 25 13 12 44 44 H 1.09003 * 109.48498 * 20.61812 * 26 9 7 45 45 H 1.08997 * 109.49399 * 260.59010 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0641 -1.2173 0.2356 9 7 1.3589 -2.3687 -0.3003 10 6 1.8828 -3.6055 0.2035 11 6 2.9393 -4.1127 -0.7915 12 6 2.3238 -4.7447 -1.9691 13 7 1.4274 -3.7866 -2.6585 14 6 1.8361 -3.1757 -3.7884 15 8 2.9370 -3.4099 -4.2402 16 6 0.9251 -2.2019 -4.4903 17 6 1.6256 -1.6552 -5.7358 18 1 1.9637 -2.4701 -6.3760 19 6 0.6910 -0.6967 -6.5149 20 6 1.6547 0.2041 -7.3148 21 6 3.0003 0.1797 -6.5688 22 9 3.9997 -0.3379 -7.3998 23 9 3.3422 1.4716 -6.1547 24 6 2.8106 -0.7390 -5.3416 25 6 0.1240 -3.5080 -2.1236 26 6 0.1303 -2.3127 -1.1388 27 1 -0.4850 0.8401 0.0004 28 1 2.3430 -3.4413 1.1779 29 1 1.0795 -4.3368 0.2932 30 1 3.5775 -4.8408 -0.2908 31 1 3.5513 -3.2721 -1.1189 32 1 1.7474 -5.6138 -1.6520 33 1 3.1063 -5.0654 -2.6568 34 1 0.0065 -2.7101 -4.7832 35 1 0.6861 -1.3783 -3.8174 36 1 0.0452 -1.2584 -7.1897 37 1 0.0939 -0.1012 -5.8243 38 1 1.7804 -0.1874 -8.3243 39 1 1.2675 1.2222 -7.3549 40 1 2.5596 -0.1488 -4.4603 41 1 3.7076 -1.3315 -5.1623 42 1 -0.5543 -3.2833 -2.9467 43 1 -0.2393 -4.3931 -1.6015 44 1 0.1159 -1.3788 -1.7007 45 1 -0.7500 -2.3649 -0.4982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981295580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:38 Heat of formation + Delta-G solvation = -121.917673 kcal Electronic energy + Delta-G solvation = -28821.725662 eV Core-core repulsion = 24703.008327 eV Total energy + Delta-G solvation = -4118.717335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.75585 -46.83318 -39.91717 -37.73880 -36.62723 -34.23607 -32.94544 -31.13544 -30.65213 -28.55386 -27.61670 -26.13747 -24.98407 -23.69547 -22.02885 -20.92580 -20.28177 -19.76733 -18.43489 -17.45079 -17.09632 -16.62616 -16.16609 -16.05681 -15.77161 -15.07134 -14.74160 -14.38809 -14.19355 -13.89257 -13.74853 -13.59116 -13.41622 -13.17906 -13.05565 -12.76351 -12.49417 -12.31667 -12.08189 -11.75775 -11.71950 -11.52674 -11.37711 -11.25812 -11.02568 -10.97808 -10.78825 -10.63101 -10.55514 -10.46935 -10.24435 -10.18812 -9.87209 -9.72496 -9.25340 -8.50874 -8.04598 -6.73711 -5.83231 -3.24735 3.10196 3.36056 3.43463 3.45647 3.52121 3.84046 4.03614 4.26060 4.43252 4.47696 4.86813 5.04065 5.13854 5.20345 5.24805 5.26647 5.34893 5.41617 5.48486 5.62522 5.65176 5.65943 5.71651 5.79362 5.84659 5.90203 5.93558 6.07094 6.09601 6.11909 6.26016 6.28931 6.38276 6.43612 6.52571 6.80438 6.91130 7.03241 7.34053 7.45144 7.77429 7.98338 8.40154 8.68034 9.17409 9.84764 10.29715 11.24581 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.005774 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.651609 B = 4848.311092 C = 6206.971979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.004 3.996 3 Si 0.896 3.104 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.130 3.870 13 N -0.585 5.585 14 C 0.520 3.480 15 O -0.557 6.557 16 C -0.133 4.133 17 C -0.070 4.070 18 H 0.090 0.910 19 C -0.119 4.119 20 C -0.161 4.161 21 C 0.277 3.723 22 F -0.202 7.202 23 F -0.202 7.202 24 C -0.154 4.154 25 C 0.078 3.922 26 C 0.164 3.836 27 H 0.253 0.747 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -5.511 -11.213 12.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.194 4.194 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.211 4.211 12 C 0.008 3.992 13 N -0.316 5.316 14 C 0.309 3.691 15 O -0.436 6.436 16 C -0.173 4.173 17 C -0.089 4.089 18 H 0.108 0.892 19 C -0.156 4.156 20 C -0.199 4.199 21 C 0.241 3.759 22 F -0.183 7.183 23 F -0.183 7.183 24 C -0.192 4.192 25 C -0.047 4.047 26 C 0.038 3.962 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.110 0.890 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.728 -5.489 -11.427 12.794 hybrid contribution 0.576 1.147 0.142 1.291 sum -1.152 -4.342 -11.285 12.146 Atomic orbital electron populations 1.70009 1.05022 1.25355 1.55047 1.24933 0.95307 0.98091 1.01025 0.86385 0.79218 0.83906 0.77915 1.21292 1.21747 1.20512 1.19184 0.92107 0.84836 1.41809 0.91821 1.43634 1.29032 1.01969 1.56552 1.20270 0.93659 0.88375 0.94278 1.21860 1.00787 1.00707 0.97708 1.20520 0.93630 0.90448 0.94583 1.47389 1.16912 1.43120 1.24172 1.20446 0.87454 0.80659 0.80561 1.90615 1.21975 1.64233 1.66819 1.21724 0.98693 0.99719 0.97159 1.21792 0.93940 0.97181 0.95976 0.89203 1.22437 0.97216 0.97154 0.98820 1.23130 0.93068 1.03258 1.00439 1.21999 0.85580 0.78130 0.90167 1.92993 1.64695 1.86733 1.73868 1.93009 1.93680 1.40553 1.91049 1.23481 1.02256 0.97611 0.95857 1.22222 0.83207 1.00975 0.98331 1.21923 0.88873 0.94643 0.90750 0.93694 0.93666 0.94877 0.92771 0.91357 0.92310 0.90571 0.88910 0.87750 0.90240 0.90074 0.89019 0.88902 0.88347 0.87810 0.91587 0.92171 0.90490 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.69 10.90 55.49 0.60 -24.08 16 2 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 3 Si 0.90 21.53 29.58 -169.99 -5.03 16.51 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.55 9.27 -15.06 -0.14 -6.69 16 8 H 0.06 1.71 7.87 -52.48 -0.41 1.30 16 9 N -0.59 -13.60 2.54 -172.04 -0.44 -14.03 16 10 C 0.16 3.19 5.63 -5.27 -0.03 3.16 16 11 C -0.17 -2.99 5.63 -29.16 -0.16 -3.16 16 12 C 0.13 2.10 5.70 -5.91 -0.03 2.07 16 13 N -0.58 -9.92 2.46 -176.65 -0.43 -10.35 16 14 C 0.52 9.07 7.48 -10.98 -0.08 8.99 16 15 O -0.56 -11.11 14.11 5.56 0.08 -11.04 16 16 C -0.13 -1.87 3.76 -27.88 -0.10 -1.98 16 17 C -0.07 -0.92 2.46 -88.63 -0.22 -1.14 16 18 H 0.09 1.21 7.97 -51.93 -0.41 0.79 16 19 C -0.12 -1.22 6.28 -25.07 -0.16 -1.38 16 20 C -0.16 -1.76 6.50 -25.61 -0.17 -1.92 16 21 C 0.28 4.02 2.58 -25.51 -0.07 3.96 16 22 F -0.20 -3.14 17.03 2.25 0.04 -3.10 16 23 F -0.20 -3.30 17.05 2.25 0.04 -3.26 16 24 C -0.15 -2.40 5.26 -24.97 -0.13 -2.53 16 25 C 0.08 1.26 5.05 -4.58 -0.02 1.24 16 26 C 0.16 3.44 5.18 -1.75 -0.01 3.43 16 27 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 28 H 0.05 0.92 8.02 -51.93 -0.42 0.50 16 29 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.44 7.91 -51.93 -0.41 1.03 16 32 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 33 H 0.08 1.27 7.12 -51.93 -0.37 0.90 16 34 H 0.09 1.04 7.37 -51.93 -0.38 0.66 16 35 H 0.10 1.62 7.22 -51.93 -0.38 1.25 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.09 0.87 8.02 -51.93 -0.42 0.45 16 39 H 0.09 0.93 8.02 -51.93 -0.42 0.51 16 40 H 0.10 1.67 7.95 -51.93 -0.41 1.26 16 41 H 0.10 1.82 7.18 -51.93 -0.37 1.45 16 42 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 43 H 0.06 0.89 7.73 -51.93 -0.40 0.49 16 44 H 0.08 1.79 5.72 -51.93 -0.30 1.50 16 45 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 LS Contribution 351.47 15.07 5.30 5.30 Total: -1.00 -30.00 351.47 -8.31 -38.31 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.06 Total: 1.70 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.41 Total: 4.06 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: -0.27 Total: -48.47 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -6.44 SS G_CDS: 0.08 Total: -6.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.00 -8.31 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981295580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.612 kcal (2) G-P(sol) polarization free energy of solvation -29.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds