Wall clock time and date at job start Tue Mar 31 2020 10:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48509 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47454 * 299.99781 * 3 2 1 6 6 H 1.48507 * 109.47285 * 59.99890 * 3 2 1 7 7 C 1.38813 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99953 * 190.10783 * 7 2 1 9 9 N 1.36932 * 119.99765 * 10.10404 * 7 2 1 10 10 C 1.43468 * 118.93795 * 208.96806 * 9 7 2 11 11 C 1.53391 * 107.85879 * 273.63240 * 10 9 7 12 12 C 1.47143 * 112.04790 * 281.54031 * 11 10 9 13 13 N 1.48216 * 110.19861 * 58.39436 * 12 11 10 14 14 C 1.34774 * 119.96996 * 102.58640 * 13 12 11 15 15 O 1.21286 * 119.99790 * 355.75049 * 14 13 12 16 16 C 1.50703 * 120.00248 * 175.75483 * 14 13 12 17 17 H 1.09001 * 110.01158 * 357.96108 * 16 14 13 18 18 C 1.54267 * 110.03223 * 236.57093 * 16 14 13 19 19 C 1.54954 * 104.15881 * 217.13573 * 18 16 14 20 20 C 1.54891 * 102.77984 * 37.88875 * 19 18 16 21 21 C 1.53865 * 110.03291 * 119.35275 * 16 14 13 22 22 H 1.09004 * 110.03695 * 238.62160 * 21 16 14 23 23 C 1.53002 * 110.03568 * 359.97438 * 21 16 14 24 24 F 1.39900 * 109.47495 * 179.60793 * 23 21 16 25 25 F 1.39898 * 109.47115 * 299.61144 * 23 21 16 26 26 C 1.43617 * 120.06173 * 282.60328 * 13 12 11 27 27 C 1.48854 * 118.94180 * 28.99313 * 9 7 2 28 28 H 0.97001 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.76726 * 33.27507 * 10 9 7 30 30 H 1.09005 * 109.76320 * 153.99327 * 10 9 7 31 31 H 1.09004 * 108.75231 * 160.97244 * 11 10 9 32 32 H 1.08999 * 109.05114 * 42.31079 * 11 10 9 33 33 H 1.09001 * 109.32815 * 298.21393 * 12 11 10 34 34 H 1.09002 * 109.32461 * 178.57061 * 12 11 10 35 35 H 1.09006 * 110.48448 * 335.78464 * 18 16 14 36 36 H 1.09000 * 110.48590 * 98.42129 * 18 16 14 37 37 H 1.08997 * 110.72278 * 279.57388 * 19 18 16 38 38 H 1.09007 * 110.92448 * 156.29656 * 19 18 16 39 39 H 1.09004 * 110.48709 * 203.40622 * 20 19 18 40 40 H 1.08996 * 110.59822 * 80.81522 * 20 19 18 41 41 H 1.09005 * 109.47230 * 59.61065 * 23 21 16 42 42 H 1.09004 * 108.87708 * 211.42320 * 26 13 12 43 43 H 1.09003 * 108.87753 * 329.96087 * 26 13 12 44 44 H 1.08994 * 109.47940 * 20.61159 * 27 9 7 45 45 H 1.08998 * 109.48218 * 260.57734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0778 -1.2093 0.1647 9 7 1.3416 -2.3789 -0.2070 10 6 1.8541 -3.5820 0.3831 11 6 2.8921 -4.1728 -0.5794 12 6 2.2618 -4.8845 -1.7025 13 7 1.3719 -3.9681 -2.4542 14 6 1.7785 -3.4481 -3.6292 15 8 2.9006 -3.6679 -4.0337 16 6 0.8390 -2.5935 -4.4405 17 1 -0.1306 -2.5325 -3.9463 18 6 0.6747 -3.1855 -5.8555 19 6 0.5877 -1.9436 -6.7782 20 6 1.6044 -0.9676 -6.1358 21 6 1.4295 -1.1838 -4.6184 22 1 0.7465 -0.4386 -4.2106 23 6 2.7853 -1.0909 -3.9155 24 9 3.3153 0.1918 -4.0922 25 9 2.6206 -1.3433 -2.5494 26 6 0.0768 -3.6335 -1.9314 27 6 0.1066 -2.3687 -1.0380 28 1 -0.4850 0.8401 -0.0004 29 1 2.3247 -3.3522 1.3391 30 1 1.0421 -4.2935 0.5337 31 1 3.5247 -4.8688 -0.0284 32 1 3.5119 -3.3670 -0.9726 33 1 1.6772 -5.7200 -1.3177 34 1 3.0362 -5.2631 -2.3697 35 1 1.5398 -3.7949 -6.1169 36 1 -0.2407 -3.7738 -5.9189 37 1 -0.4168 -1.5208 -6.7620 38 1 0.8834 -2.1941 -7.7970 39 1 1.3671 0.0618 -6.4043 40 1 2.6206 -1.2162 -6.4419 41 1 3.4667 -1.8273 -4.3416 42 1 -0.6058 -3.4612 -2.7637 43 1 -0.2926 -4.4719 -1.3409 44 1 0.0993 -1.4789 -1.6673 45 1 -0.7686 -2.3619 -0.3884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981327548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:13 Heat of formation + Delta-G solvation = -103.922130 kcal Electronic energy + Delta-G solvation = -30766.051498 eV Core-core repulsion = 26648.114509 eV Total energy + Delta-G solvation = -4117.936990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.04939 -45.99634 -40.25184 -37.83202 -36.46537 -34.19306 -32.75372 -30.80583 -30.07947 -29.16186 -27.45933 -25.41886 -24.23690 -23.59616 -22.39714 -20.76436 -20.37439 -19.68013 -18.10683 -17.67696 -16.80079 -16.21460 -16.11249 -16.04834 -15.35948 -15.10428 -14.66759 -14.22221 -14.09648 -13.67027 -13.62515 -13.17270 -12.87075 -12.83337 -12.76469 -12.40079 -12.36547 -12.11382 -11.92174 -11.64874 -11.36358 -11.20942 -11.12615 -11.05673 -10.90568 -10.73202 -10.67057 -10.62933 -10.45146 -10.20283 -10.13116 -10.07260 -9.76251 -9.58739 -9.06732 -8.36216 -7.99350 -6.52741 -5.67884 -3.10571 2.96510 3.45127 3.49983 3.53324 3.57885 4.29447 4.41444 4.59857 4.61892 4.88621 5.07006 5.17476 5.27122 5.30603 5.41299 5.47324 5.53480 5.58586 5.60386 5.63044 5.71392 5.80586 5.82702 5.84649 5.93940 5.97562 6.00561 6.12569 6.16405 6.20749 6.30768 6.35279 6.36481 6.50632 6.59858 6.89166 6.95205 7.14562 7.43405 7.56839 7.93689 7.98752 8.57639 8.62070 9.33378 9.99774 10.45720 11.40686 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.008417 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.796936 B = 3325.990293 C = 4467.718476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.009 3.991 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.224 4.224 8 H 0.059 0.941 9 N -0.584 5.584 10 C 0.164 3.836 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.574 5.574 14 C 0.528 3.472 15 O -0.563 6.563 16 C -0.110 4.110 17 H 0.103 0.897 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.122 4.122 22 H 0.099 0.901 23 C 0.234 3.766 24 F -0.219 7.219 25 F -0.153 7.153 26 C 0.074 3.926 27 C 0.169 3.831 28 H 0.249 0.751 29 H 0.045 0.955 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -7.954 -10.642 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.354 4.354 8 H 0.076 0.924 9 N -0.305 5.305 10 C 0.035 3.965 11 C -0.211 4.211 12 C 0.010 3.990 13 N -0.303 5.303 14 C 0.317 3.683 15 O -0.445 6.445 16 C -0.131 4.131 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.152 4.152 21 C -0.142 4.142 22 H 0.118 0.882 23 C 0.180 3.820 24 F -0.201 7.201 25 F -0.133 7.133 26 C -0.052 4.052 27 C 0.043 3.957 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.139 0.861 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.983 -7.933 -10.760 13.404 hybrid contribution 0.370 1.196 0.275 1.282 sum -0.613 -6.737 -10.485 12.478 Atomic orbital electron populations 1.69968 1.05004 1.24850 1.56178 1.24902 0.95176 0.97756 1.00971 0.86378 0.79727 0.84742 0.76983 1.20379 1.21668 1.22087 1.19017 0.90563 0.84011 1.41811 0.92361 1.43513 1.28148 1.03570 1.55291 1.20201 0.93704 0.88782 0.93797 1.21808 1.00913 1.00442 0.97925 1.20544 0.93519 0.91021 0.93921 1.47329 1.17616 1.45762 1.19575 1.20216 0.87601 0.79243 0.81242 1.90542 1.20709 1.61287 1.71937 1.22009 1.00235 0.93840 0.97057 0.87851 1.22353 1.02476 0.97835 0.92078 1.22464 0.99402 0.95247 0.98551 1.22337 1.00233 1.00051 0.92542 1.22644 0.96912 0.97305 0.97327 0.88217 1.22607 0.96012 0.81521 0.81867 1.92912 1.87981 1.43680 1.95503 1.93379 1.96192 1.93329 1.30413 1.22355 0.83386 1.01055 0.98381 1.21869 0.88923 0.93153 0.91742 0.94062 0.93716 0.95115 0.93065 0.90975 0.92299 0.90715 0.90389 0.91099 0.91118 0.91083 0.90813 0.90914 0.86144 0.91571 0.92141 0.90596 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.68 10.91 55.49 0.61 -25.08 16 2 C 0.01 0.25 5.03 -17.43 -0.09 0.16 16 3 Si 0.89 22.83 29.56 -169.99 -5.03 17.80 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 7 C -0.22 -5.99 6.69 -15.06 -0.10 -6.09 16 8 H 0.06 1.64 7.85 -52.49 -0.41 1.23 16 9 N -0.58 -13.68 2.27 -172.25 -0.39 -14.07 16 10 C 0.16 3.29 5.63 -5.44 -0.03 3.26 16 11 C -0.17 -3.07 5.60 -29.34 -0.16 -3.24 16 12 C 0.13 2.16 5.69 -5.91 -0.03 2.12 16 13 N -0.57 -9.94 2.42 -176.65 -0.43 -10.36 16 14 C 0.53 9.31 4.03 -10.99 -0.04 9.26 16 15 O -0.56 -11.07 13.25 5.55 0.07 -11.00 16 16 C -0.11 -1.65 2.92 -90.66 -0.26 -1.92 16 17 H 0.10 1.50 5.37 -51.93 -0.28 1.23 16 18 C -0.11 -1.31 6.33 -25.04 -0.16 -1.46 16 19 C -0.12 -1.25 6.91 -24.70 -0.17 -1.42 16 20 C -0.11 -1.46 6.18 -25.07 -0.16 -1.61 16 21 C -0.12 -1.97 3.06 -89.51 -0.27 -2.25 16 22 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 23 C 0.23 4.57 3.73 37.16 0.14 4.71 16 24 F -0.22 -4.52 17.14 2.25 0.04 -4.49 16 25 F -0.15 -3.56 12.15 2.25 0.03 -3.53 16 26 C 0.07 1.24 5.01 -4.58 -0.02 1.21 16 27 C 0.17 3.67 4.86 -1.75 -0.01 3.66 16 28 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.04 0.93 8.02 -51.93 -0.42 0.51 16 30 H 0.03 0.57 7.59 -51.93 -0.39 0.17 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.57 7.90 -51.93 -0.41 1.16 16 33 H 0.06 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.07 1.25 7.17 -51.93 -0.37 0.88 16 35 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.93 7.84 -51.93 -0.41 0.53 16 41 H 0.12 2.34 5.79 -51.93 -0.30 2.04 16 42 H 0.07 0.96 5.69 -51.93 -0.30 0.67 16 43 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 44 H 0.08 1.86 6.67 -51.93 -0.35 1.52 16 45 H 0.04 0.92 7.95 -51.93 -0.41 0.51 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -30.51 338.96 -8.29 -38.80 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.93 Total: 0.41 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.38 Total: 6.40 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.21 Total: -49.51 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.07 Total: -11.00 kcal Atomic # 9 Polarization: -8.08 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.51 -8.29 -38.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981327548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.120 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds