Wall clock time and date at job start Tue Mar 31 2020 10:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99887 * 2 1 4 4 H 1.48509 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47454 * 299.99781 * 3 2 1 6 6 H 1.48507 * 109.47285 * 59.99890 * 3 2 1 7 7 C 1.38813 * 120.00150 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99953 * 190.10783 * 7 2 1 9 9 N 1.36932 * 119.99765 * 10.10404 * 7 2 1 10 10 C 1.43468 * 118.93795 * 208.96806 * 9 7 2 11 11 C 1.53391 * 107.85879 * 273.63240 * 10 9 7 12 12 C 1.47143 * 112.04790 * 281.54031 * 11 10 9 13 13 N 1.48216 * 110.19861 * 58.39436 * 12 11 10 14 14 C 1.34774 * 119.96996 * 102.58640 * 13 12 11 15 15 O 1.21286 * 119.99790 * 355.75049 * 14 13 12 16 16 C 1.50703 * 120.00248 * 175.75483 * 14 13 12 17 17 H 1.09001 * 110.01158 * 357.96108 * 16 14 13 18 18 C 1.54267 * 110.03223 * 236.57093 * 16 14 13 19 19 C 1.54954 * 104.15881 * 217.13573 * 18 16 14 20 20 C 1.54891 * 102.77984 * 37.88875 * 19 18 16 21 21 C 1.53865 * 110.03291 * 119.35275 * 16 14 13 22 22 H 1.09004 * 110.03695 * 238.62160 * 21 16 14 23 23 C 1.53002 * 110.03568 * 359.97438 * 21 16 14 24 24 F 1.39900 * 109.47495 * 179.60793 * 23 21 16 25 25 F 1.39898 * 109.47115 * 299.61144 * 23 21 16 26 26 C 1.43617 * 120.06173 * 282.60328 * 13 12 11 27 27 C 1.48854 * 118.94180 * 28.99313 * 9 7 2 28 28 H 0.97001 * 119.99855 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.76726 * 33.27507 * 10 9 7 30 30 H 1.09005 * 109.76320 * 153.99327 * 10 9 7 31 31 H 1.09004 * 108.75231 * 160.97244 * 11 10 9 32 32 H 1.08999 * 109.05114 * 42.31079 * 11 10 9 33 33 H 1.09001 * 109.32815 * 298.21393 * 12 11 10 34 34 H 1.09002 * 109.32461 * 178.57061 * 12 11 10 35 35 H 1.09006 * 110.48448 * 335.78464 * 18 16 14 36 36 H 1.09000 * 110.48590 * 98.42129 * 18 16 14 37 37 H 1.08997 * 110.72278 * 279.57388 * 19 18 16 38 38 H 1.09007 * 110.92448 * 156.29656 * 19 18 16 39 39 H 1.09004 * 110.48709 * 203.40622 * 20 19 18 40 40 H 1.08996 * 110.59822 * 80.81522 * 20 19 18 41 41 H 1.09005 * 109.47230 * 59.61065 * 23 21 16 42 42 H 1.09004 * 108.87708 * 211.42320 * 26 13 12 43 43 H 1.09003 * 108.87753 * 329.96087 * 26 13 12 44 44 H 1.08994 * 109.47940 * 20.61159 * 27 9 7 45 45 H 1.08998 * 109.48218 * 260.57734 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0778 -1.2093 0.1647 9 7 1.3416 -2.3789 -0.2070 10 6 1.8541 -3.5820 0.3831 11 6 2.8921 -4.1728 -0.5794 12 6 2.2618 -4.8845 -1.7025 13 7 1.3719 -3.9681 -2.4542 14 6 1.7785 -3.4481 -3.6292 15 8 2.9006 -3.6679 -4.0337 16 6 0.8390 -2.5935 -4.4405 17 1 -0.1306 -2.5325 -3.9463 18 6 0.6747 -3.1855 -5.8555 19 6 0.5877 -1.9436 -6.7782 20 6 1.6044 -0.9676 -6.1358 21 6 1.4295 -1.1838 -4.6184 22 1 0.7465 -0.4386 -4.2106 23 6 2.7853 -1.0909 -3.9155 24 9 3.3153 0.1918 -4.0922 25 9 2.6206 -1.3433 -2.5494 26 6 0.0768 -3.6335 -1.9314 27 6 0.1066 -2.3687 -1.0380 28 1 -0.4850 0.8401 -0.0004 29 1 2.3247 -3.3522 1.3391 30 1 1.0421 -4.2935 0.5337 31 1 3.5247 -4.8688 -0.0284 32 1 3.5119 -3.3670 -0.9726 33 1 1.6772 -5.7200 -1.3177 34 1 3.0362 -5.2631 -2.3697 35 1 1.5398 -3.7949 -6.1169 36 1 -0.2407 -3.7738 -5.9189 37 1 -0.4168 -1.5208 -6.7620 38 1 0.8834 -2.1941 -7.7970 39 1 1.3671 0.0618 -6.4043 40 1 2.6206 -1.2162 -6.4419 41 1 3.4667 -1.8273 -4.3416 42 1 -0.6058 -3.4612 -2.7637 43 1 -0.2926 -4.4719 -1.3409 44 1 0.0993 -1.4789 -1.6673 45 1 -0.7686 -2.3619 -0.3884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981327548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:12 Heat of formation + Delta-G solvation = -120.728196 kcal Electronic energy + Delta-G solvation = -30766.780264 eV Core-core repulsion = 26648.114509 eV Total energy + Delta-G solvation = -4118.665755 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.70840 -47.69588 -41.58473 -39.19642 -37.85834 -35.87947 -34.32639 -32.67586 -31.25529 -30.32859 -29.09711 -27.04383 -25.65752 -25.34590 -23.82088 -21.78434 -21.72995 -21.33749 -19.52960 -19.09554 -18.55169 -17.84350 -17.69455 -17.54736 -16.96311 -16.32755 -16.23826 -15.86335 -15.47322 -15.38665 -15.01065 -14.73984 -14.51866 -14.33005 -14.14326 -13.96656 -13.86279 -13.75657 -13.42622 -13.09794 -12.96435 -12.86750 -12.56744 -12.46446 -12.33682 -12.18084 -12.08997 -12.00889 -11.89471 -11.72212 -11.67204 -11.51898 -11.44896 -11.35753 -10.54398 -10.35517 -9.44109 -8.47935 -7.77324 -5.19086 1.34677 1.40476 1.46983 1.60274 2.20862 2.53203 2.91892 3.27744 3.37606 3.46477 3.47642 3.71742 3.79459 4.06714 4.10355 4.16047 4.25281 4.28117 4.35398 4.39847 4.42298 4.54696 4.56355 4.60247 4.65427 4.78113 4.81080 4.89921 4.98214 4.98550 5.07896 5.14811 5.16799 5.17994 5.30582 5.38238 5.42759 5.56707 5.70173 5.82278 5.88485 6.50873 6.60945 7.25595 7.30274 8.06107 8.43510 9.27148 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012565 B = 0.008417 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.796936 B = 3325.990293 C = 4467.718476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.029 4.029 3 Si 0.925 3.075 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.290 1.290 7 C -0.210 4.210 8 H 0.036 0.964 9 N -0.595 5.595 10 C 0.159 3.841 11 C -0.154 4.154 12 C 0.129 3.871 13 N -0.578 5.578 14 C 0.522 3.478 15 O -0.588 6.588 16 C -0.109 4.109 17 H 0.109 0.891 18 C -0.102 4.102 19 C -0.108 4.108 20 C -0.113 4.113 21 C -0.119 4.119 22 H 0.083 0.917 23 C 0.225 3.775 24 F -0.229 7.229 25 F -0.178 7.178 26 C 0.085 3.915 27 C 0.177 3.823 28 H 0.244 0.756 29 H 0.031 0.969 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.121 0.879 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.700 -9.988 -12.185 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.224 4.224 3 Si 0.757 3.243 4 H -0.211 1.211 5 H -0.225 1.225 6 H -0.218 1.218 7 C -0.341 4.341 8 H 0.054 0.946 9 N -0.317 5.317 10 C 0.032 3.968 11 C -0.195 4.195 12 C 0.008 3.992 13 N -0.307 5.307 14 C 0.312 3.688 15 O -0.471 6.471 16 C -0.130 4.130 17 H 0.127 0.873 18 C -0.140 4.140 19 C -0.145 4.145 20 C -0.150 4.150 21 C -0.139 4.139 22 H 0.102 0.898 23 C 0.171 3.829 24 F -0.211 7.211 25 F -0.159 7.159 26 C -0.041 4.041 27 C 0.051 3.949 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.114 0.886 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.138 0.862 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.061 0.939 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -2.236 -9.991 -12.299 16.003 hybrid contribution 0.877 1.800 0.805 2.158 sum -1.359 -8.192 -11.494 14.180 Atomic orbital electron populations 1.70051 1.05296 1.24581 1.57812 1.25212 0.95700 0.99129 1.02384 0.85832 0.78606 0.83268 0.76588 1.21109 1.22453 1.21753 1.18926 0.89702 0.85545 1.39955 0.94590 1.43700 1.28323 1.03543 1.56138 1.20355 0.94807 0.88125 0.93510 1.21594 1.00043 0.99597 0.98257 1.20645 0.94020 0.91537 0.93036 1.47462 1.17916 1.45763 1.19537 1.20702 0.87619 0.78962 0.81488 1.90524 1.21872 1.62094 1.72606 1.22101 0.99450 0.92656 0.98836 0.87262 1.22371 1.03336 0.98429 0.89890 1.22470 0.99390 0.93578 0.99093 1.22390 1.01118 1.01504 0.90029 1.22661 0.94163 0.97908 0.99185 0.89807 1.22974 0.98268 0.80894 0.80744 1.92880 1.88392 1.44398 1.95445 1.93309 1.96431 1.93496 1.32671 1.22169 0.83821 0.99242 0.98827 1.21658 0.87223 0.94628 0.91359 0.94600 0.95045 0.92409 0.90309 0.95457 0.88618 0.90985 0.91399 0.88406 0.89552 0.88763 0.89986 0.91206 0.86159 0.88758 0.89410 0.93881 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.29 10.91 21.65 0.24 -53.05 16 2 C -0.03 -1.66 5.03 84.86 0.43 -1.24 16 3 Si 0.93 48.09 29.56 68.60 2.03 50.12 16 4 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 5 H -0.30 -15.65 7.11 99.48 0.71 -14.95 16 6 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 7 C -0.21 -11.52 6.69 84.03 0.56 -10.96 16 8 H 0.04 2.12 7.85 -2.91 -0.02 2.09 16 9 N -0.60 -27.95 2.27 -698.87 -1.59 -29.54 16 10 C 0.16 6.22 5.63 87.07 0.49 6.71 16 11 C -0.15 -5.38 5.60 28.90 0.16 -5.22 16 12 C 0.13 3.90 5.69 84.23 0.48 4.38 16 13 N -0.58 -18.83 2.42 -831.17 -2.01 -20.84 16 14 C 0.52 17.72 4.03 87.66 0.35 18.07 16 15 O -0.59 -22.77 13.25 -3.05 -0.04 -22.81 16 16 C -0.11 -3.08 2.92 -10.82 -0.03 -3.11 16 17 H 0.11 2.92 5.37 -2.39 -0.01 2.91 16 18 C -0.10 -2.10 6.33 31.69 0.20 -1.90 16 19 C -0.11 -1.88 6.91 31.91 0.22 -1.66 16 20 C -0.11 -2.69 6.18 31.67 0.20 -2.49 16 21 C -0.12 -3.80 3.06 -10.07 -0.03 -3.83 16 22 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 23 C 0.22 8.98 3.73 71.98 0.27 9.25 16 24 F -0.23 -9.75 17.14 44.97 0.77 -8.98 16 25 F -0.18 -8.58 12.15 44.97 0.55 -8.04 16 26 C 0.08 2.61 5.01 87.55 0.44 3.05 16 27 C 0.18 7.61 4.86 86.57 0.42 8.03 16 28 H 0.24 13.84 8.31 -92.71 -0.77 13.07 16 29 H 0.03 1.29 8.02 -2.39 -0.02 1.28 16 30 H 0.06 1.96 7.59 -2.38 -0.02 1.94 16 31 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 32 H 0.03 1.19 7.90 -2.39 -0.02 1.17 16 33 H 0.10 2.24 8.06 -2.39 -0.02 2.22 16 34 H 0.07 2.26 7.17 -2.39 -0.02 2.24 16 35 H 0.07 1.57 7.48 -2.38 -0.02 1.55 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 1.70 7.84 -2.39 -0.02 1.68 16 41 H 0.12 4.79 5.79 -2.38 -0.01 4.77 16 42 H 0.09 2.43 5.69 -2.39 -0.01 2.41 16 43 H 0.09 2.30 7.73 -2.39 -0.02 2.28 16 44 H 0.04 2.13 6.67 -2.39 -0.02 2.12 16 45 H 0.02 0.87 7.95 -2.39 -0.02 0.85 16 Total: -1.00 -68.88 338.96 5.08 -63.79 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.99 Total: 10.27 kcal Atomic # 6 Polarization: 14.92 SS G_CDS: 4.16 Total: 19.08 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -3.37 Total: -103.43 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.04 Total: -22.81 kcal Atomic # 9 Polarization: -18.34 SS G_CDS: 1.32 Total: -17.02 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -68.88 5.08 -63.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981327548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.934 kcal (2) G-P(sol) polarization free energy of solvation -68.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds