Wall clock time and date at job start Tue Mar 31 2020 10:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00161 * 2 1 4 4 H 1.48493 * 109.47544 * 240.00118 * 3 2 1 5 5 H 1.48503 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47023 * 119.99978 * 3 2 1 7 7 C 1.38811 * 120.00023 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00217 * 191.21549 * 7 2 1 9 9 N 1.36946 * 119.99914 * 11.21176 * 7 2 1 10 10 C 1.43462 * 118.93787 * 208.70957 * 9 7 2 11 11 C 1.53795 * 107.96196 * 273.61234 * 10 9 7 12 12 C 1.47135 * 111.84156 * 281.66537 * 11 10 9 13 13 N 1.48215 * 110.34043 * 58.29966 * 12 11 10 14 14 C 1.34781 * 119.97186 * 102.50795 * 13 12 11 15 15 O 1.21280 * 120.00402 * 183.32141 * 14 13 12 16 16 C 1.50703 * 119.99559 * 3.32625 * 14 13 12 17 17 H 1.09000 * 110.01690 * 309.37793 * 16 14 13 18 18 C 1.54261 * 110.03663 * 70.76903 * 16 14 13 19 19 C 1.55014 * 104.13673 * 95.68390 * 18 16 14 20 20 C 1.54887 * 102.75491 * 37.95468 * 19 18 16 21 21 C 1.53874 * 110.03217 * 187.98862 * 16 14 13 22 22 H 1.09009 * 110.03000 * 359.97438 * 21 16 14 23 23 C 1.52994 * 110.03562 * 121.37958 * 21 16 14 24 24 F 1.39908 * 109.47212 * 300.00027 * 23 21 16 25 25 F 1.39897 * 109.47298 * 59.99928 * 23 21 16 26 26 C 1.43621 * 120.06316 * 282.48981 * 13 12 11 27 27 C 1.48856 * 118.93774 * 28.44764 * 9 7 2 28 28 H 0.96993 * 120.00058 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.76647 * 33.23201 * 10 9 7 30 30 H 1.09003 * 109.75917 * 153.94518 * 10 9 7 31 31 H 1.08996 * 109.00666 * 42.27828 * 11 10 9 32 32 H 1.09004 * 109.00164 * 161.06482 * 11 10 9 33 33 H 1.09005 * 109.32684 * 178.56234 * 12 11 10 34 34 H 1.08994 * 109.33212 * 298.03261 * 12 11 10 35 35 H 1.08997 * 110.49025 * 214.35571 * 18 16 14 36 36 H 1.09006 * 110.48541 * 336.99391 * 18 16 14 37 37 H 1.09000 * 110.76273 * 279.62742 * 19 18 16 38 38 H 1.09002 * 110.74261 * 156.26451 * 19 18 16 39 39 H 1.08999 * 110.48727 * 203.37162 * 20 19 18 40 40 H 1.08995 * 110.60065 * 80.78139 * 20 19 18 41 41 H 1.09001 * 109.47536 * 180.02562 * 23 21 16 42 42 H 1.08995 * 108.87629 * 211.44321 * 26 13 12 43 43 H 1.08995 * 108.86993 * 329.98332 * 26 13 12 44 44 H 1.09002 * 109.47774 * 260.62181 * 27 9 7 45 45 H 1.09004 * 109.48067 * 20.65435 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 3.0748 -1.2112 0.1814 9 7 1.3451 -2.3767 -0.2317 10 6 1.8509 -3.5869 0.3496 11 6 2.9045 -4.1686 -0.6079 12 6 2.2846 -4.8635 -1.7471 13 7 1.4037 -3.9378 -2.4979 14 6 1.8244 -3.4032 -3.6615 15 8 1.1294 -2.5993 -4.2460 16 6 3.1584 -3.8045 -4.2363 17 1 3.9350 -3.7116 -3.4771 18 6 3.0959 -5.2566 -4.7532 19 6 2.7935 -5.1072 -6.2662 20 6 3.6293 -3.8644 -6.6609 21 6 3.4978 -2.9196 -5.4485 22 1 2.6974 -2.2001 -5.6213 23 6 4.8190 -2.1863 -5.2086 24 9 4.7058 -1.3820 -4.0694 25 9 5.8433 -3.1203 -5.0200 26 6 0.1021 -3.6100 -1.9870 27 6 0.1173 -2.3556 -1.0730 28 1 -0.4850 0.8400 0.0004 29 1 2.3097 -3.3689 1.3140 30 1 1.0375 -4.3004 0.4813 31 1 3.5288 -3.3580 -0.9836 32 1 3.5310 -4.8730 -0.0607 33 1 3.0652 -5.2363 -2.4104 34 1 1.6954 -5.7038 -1.3799 35 1 4.0526 -5.7568 -4.6026 36 1 2.2956 -5.8045 -4.2557 37 1 1.7314 -4.9272 -6.4320 38 1 3.1275 -5.9876 -6.8154 39 1 3.2181 -3.3965 -7.5554 40 1 4.6722 -4.1382 -6.8198 41 1 5.0502 -1.5623 -6.0718 42 1 -0.5701 -3.4276 -2.8254 43 1 -0.2740 -4.4559 -1.4116 44 1 -0.7635 -2.3591 -0.4308 45 1 0.1143 -1.4566 -1.6894 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981327549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:17 Heat of formation + Delta-G solvation = -117.910830 kcal Electronic energy + Delta-G solvation = -29462.218621 eV Core-core repulsion = 25343.675036 eV Total energy + Delta-G solvation = -4118.543585 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.83198 -46.77766 -40.24643 -37.75954 -36.48295 -34.32719 -32.25977 -31.09312 -30.36097 -29.45373 -27.27688 -25.40567 -24.87185 -23.58235 -22.42796 -21.01981 -20.20708 -19.59405 -18.59005 -17.49384 -16.97370 -16.77989 -16.58196 -16.02614 -15.77720 -15.27845 -14.81498 -14.49478 -14.04605 -13.70334 -13.64881 -13.42519 -13.19133 -13.16183 -13.05451 -12.85390 -12.47090 -12.43240 -12.23951 -11.63092 -11.44218 -11.36569 -11.23390 -11.10625 -10.90210 -10.87260 -10.79007 -10.63649 -10.57515 -10.50279 -10.30003 -10.11316 -9.72238 -9.64356 -9.17905 -8.38194 -7.97098 -6.56030 -5.68749 -3.15144 3.11186 3.45129 3.50108 3.52153 3.54112 3.87391 4.16856 4.29746 4.42970 4.59310 4.79390 4.87144 4.97851 5.04229 5.21440 5.33028 5.41332 5.45128 5.49928 5.56713 5.58082 5.66517 5.70546 5.71801 5.81424 5.87087 5.91294 6.00878 6.11700 6.22514 6.24239 6.24377 6.43794 6.46220 6.49118 6.82981 7.03099 7.07852 7.52662 7.71510 7.88788 7.99349 8.56856 8.74894 9.31433 9.98392 10.44823 11.38959 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013792 B = 0.005842 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.611026 B = 4791.787111 C = 5693.541399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.164 3.836 11 C -0.175 4.175 12 C 0.120 3.880 13 N -0.581 5.581 14 C 0.526 3.474 15 O -0.543 6.543 16 C -0.107 4.107 17 H 0.099 0.901 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.139 4.139 22 H 0.126 0.874 23 C 0.264 3.736 24 F -0.196 7.196 25 F -0.208 7.208 26 C 0.090 3.910 27 C 0.169 3.831 28 H 0.253 0.747 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.054 0.946 44 H 0.039 0.961 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 -12.786 -11.548 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.729 3.271 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.078 0.922 9 N -0.310 5.310 10 C 0.035 3.965 11 C -0.216 4.216 12 C -0.002 4.002 13 N -0.312 5.312 14 C 0.313 3.687 15 O -0.421 6.421 16 C -0.128 4.128 17 H 0.117 0.883 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.158 4.158 22 H 0.144 0.856 23 C 0.211 3.789 24 F -0.177 7.177 25 F -0.189 7.189 26 C -0.035 4.035 27 C 0.044 3.956 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.565 -12.223 -11.790 18.207 hybrid contribution 0.664 1.024 0.334 1.265 sum 7.228 -11.199 -11.455 17.575 Atomic orbital electron populations 1.69966 1.05192 1.25450 1.54549 1.25048 0.95311 0.98235 1.00411 0.86416 0.78950 0.83598 0.78087 1.20928 1.21651 1.20993 1.19053 0.90976 0.84498 1.43913 0.92158 1.43631 1.29189 1.03185 1.55041 1.20237 0.93624 0.88852 0.93785 1.21949 1.01121 1.00344 0.98222 1.20805 0.93601 0.91579 0.94232 1.47266 1.17268 1.45914 1.20728 1.20080 0.87394 0.80434 0.80791 1.90624 1.56925 1.33401 1.61106 1.21819 0.97067 0.96209 0.97701 0.88284 1.22416 1.02423 0.94104 0.96078 1.22475 1.00432 0.97427 0.95387 1.22343 1.01016 0.95488 0.96414 1.23002 0.96974 0.99816 0.95989 0.85580 1.21917 0.86467 0.83797 0.86767 1.93077 1.96332 1.73880 1.54389 1.92941 1.62069 1.67706 1.96233 1.22043 0.83252 0.99856 0.98364 1.21902 0.88447 0.94281 0.91000 0.93676 0.93664 0.94929 0.91430 0.92554 0.90996 0.91761 0.90427 0.90783 0.91004 0.91045 0.90745 0.90718 0.87451 0.91341 0.92736 0.94309 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.13 10.93 55.49 0.61 -26.53 16 2 C 0.01 0.24 5.01 -17.43 -0.09 0.16 16 3 Si 0.90 23.00 29.57 -169.99 -5.03 17.97 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.92 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.25 -7.17 9.25 -15.06 -0.14 -7.31 16 8 H 0.06 1.70 7.85 -52.49 -0.41 1.29 16 9 N -0.59 -14.73 2.52 -171.78 -0.43 -15.16 16 10 C 0.16 3.34 5.63 -5.24 -0.03 3.31 16 11 C -0.18 -2.97 5.64 -29.13 -0.16 -3.14 16 12 C 0.12 1.78 4.98 -5.91 -0.03 1.75 16 13 N -0.58 -10.51 2.45 -176.44 -0.43 -10.94 16 14 C 0.53 9.85 6.81 -10.98 -0.07 9.77 16 15 O -0.54 -12.07 14.82 5.56 0.08 -11.99 16 16 C -0.11 -1.56 1.65 -90.65 -0.15 -1.71 16 17 H 0.10 1.55 6.67 -51.93 -0.35 1.20 16 18 C -0.11 -1.24 5.08 -25.01 -0.13 -1.36 16 19 C -0.12 -1.18 6.91 -24.67 -0.17 -1.35 16 20 C -0.12 -1.14 6.29 -25.07 -0.16 -1.30 16 21 C -0.14 -1.85 2.74 -89.50 -0.25 -2.10 16 22 H 0.13 1.98 6.43 -51.92 -0.33 1.65 16 23 C 0.26 3.46 4.73 37.15 0.18 3.64 16 24 F -0.20 -3.48 16.91 2.25 0.04 -3.44 16 25 F -0.21 -2.73 16.09 2.25 0.04 -2.70 16 26 C 0.09 1.76 5.24 -4.39 -0.02 1.74 16 27 C 0.17 4.17 5.19 -1.57 -0.01 4.16 16 28 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.05 0.95 8.02 -51.93 -0.42 0.53 16 30 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 31 H 0.07 1.35 7.91 -51.93 -0.41 0.94 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.90 4.87 -51.93 -0.25 0.65 16 34 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.81 7.03 -51.93 -0.37 0.45 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.66 7.25 -51.93 -0.38 0.28 16 41 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 1.36 7.42 -51.93 -0.39 0.98 16 43 H 0.05 0.94 7.73 -51.93 -0.40 0.54 16 44 H 0.04 1.01 7.96 -51.93 -0.41 0.60 16 45 H 0.08 2.21 6.67 -51.93 -0.35 1.86 16 LS Contribution 348.34 15.07 5.25 5.25 Total: -1.00 -33.20 348.34 -8.05 -41.25 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.94 Total: 0.03 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: -1.23 Total: 6.26 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.26 Total: -52.63 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 9 Polarization: -6.22 SS G_CDS: 0.07 Total: -6.14 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.03 Total: 17.97 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.20 -8.05 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981327549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.662 kcal (2) G-P(sol) polarization free energy of solvation -33.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds