Wall clock time and date at job start Tue Mar 31 2020 11:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50699 * 112.85268 * 2 1 4 4 O 1.21283 * 119.99830 * 228.81035 * 3 2 1 5 5 N 1.34773 * 120.00087 * 48.79820 * 3 2 1 6 6 C 1.46504 * 119.99951 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.46747 * 324.99830 * 6 5 3 8 8 C 1.53000 * 109.47384 * 84.99889 * 6 5 3 9 9 C 1.52996 * 109.47253 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47421 * 300.00429 * 9 8 6 11 11 C 1.53000 * 109.47258 * 59.99574 * 10 9 8 12 12 H 1.09004 * 109.47226 * 60.00105 * 11 10 9 13 13 N 1.46506 * 109.47433 * 180.02562 * 11 10 9 14 14 C 1.36931 * 119.99939 * 275.00310 * 13 11 10 15 15 H 1.08000 * 120.00644 * 359.97438 * 14 13 11 16 16 C 1.38815 * 119.99715 * 179.97438 * 14 13 11 17 17 N 1.31611 * 120.00107 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99746 * 179.72150 * 16 14 13 19 19 H 1.48497 * 109.47323 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46790 * 120.00304 * 18 16 14 21 21 H 1.48501 * 109.47364 * 240.00332 * 18 16 14 22 22 C 1.52996 * 109.47253 * 300.00530 * 11 10 9 23 23 C 1.53785 * 113.69175 * 131.26239 * 2 1 3 24 24 C 1.53788 * 87.08088 * 89.12510 * 23 2 1 25 25 F 1.39895 * 113.61678 * 270.88972 * 24 23 2 26 26 F 1.39900 * 113.61227 * 139.98133 * 24 23 2 27 27 C 1.53779 * 87.07802 * 25.43399 * 24 23 2 28 28 H 1.08997 * 109.47022 * 69.67010 * 1 2 3 29 29 H 1.08998 * 109.47236 * 189.67226 * 1 2 3 30 30 H 1.09004 * 109.46848 * 309.66893 * 1 2 3 31 31 H 0.97001 * 120.00256 * 0.02562 * 5 3 2 32 32 H 1.08999 * 109.46803 * 60.00093 * 8 6 5 33 33 H 1.08992 * 109.47181 * 300.00235 * 8 6 5 34 34 H 1.08996 * 109.47422 * 180.02562 * 9 8 6 35 35 H 1.09004 * 109.46658 * 60.00076 * 9 8 6 36 36 H 1.08999 * 109.47012 * 299.99948 * 10 9 8 37 37 H 1.08998 * 109.47407 * 179.97438 * 10 9 8 38 38 H 0.97000 * 119.99307 * 95.00104 * 13 11 10 39 39 H 0.97000 * 120.00330 * 179.97438 * 17 16 14 40 40 H 1.09009 * 109.47234 * 180.02562 * 22 11 10 41 41 H 1.08999 * 109.46985 * 299.99605 * 22 11 10 42 42 H 1.08997 * 113.61735 * 203.67348 * 23 2 1 43 43 H 1.08995 * 113.61608 * 334.58245 * 23 2 1 44 44 H 1.09003 * 113.61650 * 220.02083 * 27 24 23 45 45 H 1.08998 * 113.69425 * 89.12450 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7904 5 7 1.6685 2.3083 0.8782 6 6 2.2371 3.6585 0.8778 7 1 3.2978 3.6059 0.6324 8 6 1.5146 4.5158 -0.1633 9 6 2.1080 5.9261 -0.1633 10 6 1.9350 6.5522 1.2219 11 6 2.6575 5.6948 2.2630 12 1 3.7183 5.6425 2.0179 13 7 2.4913 6.2940 3.5896 14 6 3.3422 7.2829 4.0056 15 1 4.1361 7.6209 3.3561 16 6 3.1844 7.8509 5.2624 17 7 2.2173 7.4387 6.0541 18 14 4.3501 9.1945 5.8330 19 1 5.3467 9.4708 4.7673 20 1 3.5781 10.4302 6.1206 21 1 5.0516 8.7512 7.0645 22 6 2.0641 4.2846 2.2630 23 6 2.1479 -0.9287 1.0586 24 6 2.0950 -2.0420 -0.0011 25 9 0.8942 -2.7599 -0.0003 26 9 3.2237 -2.8686 -0.0023 27 6 2.1460 -0.9282 -1.0601 28 1 -0.3633 0.3570 -0.9636 29 1 -0.3633 -1.0130 0.1727 30 1 -0.3633 0.6560 0.7911 31 1 0.9705 2.0762 1.5105 32 1 0.4539 4.5684 0.0821 33 1 1.6375 4.0696 -1.1501 34 1 1.5930 6.5370 -0.9046 35 1 3.1688 5.8738 -0.4084 36 1 0.8742 6.6044 1.4672 37 1 2.3581 7.5567 1.2221 38 1 1.7785 5.9901 4.1731 39 1 2.1073 7.8354 6.9325 40 1 2.5785 3.6739 3.0051 41 1 1.0033 4.3368 2.5082 42 1 3.1609 -0.6487 1.3473 43 1 1.4974 -1.1093 1.9143 44 1 1.4939 -1.1081 -1.9148 45 1 3.1579 -0.6470 -1.3516 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981451328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:38 Heat of formation + Delta-G solvation = -122.876756 kcal Electronic energy + Delta-G solvation = -27092.140920 eV Core-core repulsion = 22973.381996 eV Total energy + Delta-G solvation = -4118.758924 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.19818 -47.51131 -40.74537 -38.64495 -37.20016 -34.77815 -33.40964 -31.17136 -30.26396 -28.95273 -27.80412 -26.73455 -24.86812 -23.75044 -22.30359 -21.77174 -20.63886 -19.92995 -19.06158 -18.35988 -17.21154 -17.04369 -16.81375 -16.21032 -16.14281 -15.22324 -14.81919 -14.48786 -14.42250 -14.31354 -14.01635 -13.90581 -13.86498 -13.70629 -13.53903 -13.21802 -12.82464 -12.76862 -12.62264 -12.22052 -12.14984 -12.09680 -11.65653 -11.42807 -11.02795 -10.98433 -10.91531 -10.84758 -10.76759 -10.39117 -10.30603 -10.20789 -10.05748 -9.73477 -9.59711 -9.06569 -8.90240 -6.99375 -5.79921 -3.08569 2.36979 2.89293 3.11341 3.37785 3.41349 3.47633 3.49365 3.77719 3.79909 4.03929 4.51335 4.55332 4.65042 4.87330 4.96551 5.03247 5.04849 5.09995 5.21470 5.27998 5.36567 5.38912 5.46818 5.56014 5.58938 5.64808 5.69323 5.74860 5.82700 5.92883 5.98103 6.09744 6.24726 6.27900 6.46926 6.48784 6.57397 6.68667 6.92926 7.08587 7.39067 7.68742 8.06591 8.38748 9.50173 10.07031 10.41754 11.42848 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022100 B = 0.002598 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.667222 B =10776.105434 C =11324.168154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.533 3.467 4 O -0.535 6.535 5 N -0.717 5.717 6 C 0.147 3.853 7 H 0.088 0.912 8 C -0.123 4.123 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.184 3.816 12 H 0.048 0.952 13 N -0.724 5.724 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.129 4.129 23 C -0.148 4.148 24 C 0.256 3.744 25 F -0.177 7.177 26 F -0.188 7.188 27 C -0.139 4.139 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.400 0.600 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.118 0.882 43 H 0.104 0.896 44 H 0.099 0.901 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -17.832 -13.727 23.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C 0.318 3.682 4 O -0.411 6.411 5 N -0.367 5.367 6 C 0.043 3.957 7 H 0.106 0.894 8 C -0.162 4.162 9 C -0.154 4.154 10 C -0.177 4.177 11 C 0.073 3.927 12 H 0.066 0.934 13 N -0.365 5.365 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.168 4.168 23 C -0.186 4.186 24 C 0.220 3.780 25 F -0.158 7.158 26 F -0.168 7.168 27 C -0.177 4.177 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.234 0.766 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.117 0.883 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.313 -17.524 -14.243 22.990 hybrid contribution -0.091 0.391 0.937 1.020 sum -4.404 -17.133 -13.305 22.135 Atomic orbital electron populations 1.21778 0.90171 1.04125 1.03527 1.21882 0.97906 0.92882 0.98197 1.19860 0.82194 0.85445 0.80702 1.90715 1.31072 1.80320 1.39042 1.46156 1.41328 1.12254 1.36922 1.21079 0.98697 0.79688 0.96205 0.89384 1.21870 0.99846 0.95853 0.98602 1.21486 1.00715 0.94838 0.98312 1.22292 1.01221 1.00488 0.93729 1.20095 0.96907 0.88814 0.86879 0.93370 1.42408 1.37331 1.43775 1.12968 1.19287 1.07991 1.11050 0.98478 0.91091 1.24735 0.98863 1.00394 0.96994 1.69662 1.33453 1.45325 1.09755 0.86139 0.80156 0.81642 0.78406 1.20524 1.21897 1.21883 1.22094 1.01963 0.98296 0.94473 1.24138 1.04982 0.92000 0.97527 1.21934 0.71800 0.83180 1.01082 1.92996 1.44990 1.80514 1.97253 1.93028 1.50788 1.75784 1.97223 1.24072 1.05673 0.90874 0.97095 0.90960 0.90237 0.91097 0.76569 0.92041 0.92206 0.92485 0.92172 0.92657 0.91872 0.78342 0.93582 0.91300 0.91690 0.86369 0.87765 0.88283 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.95 37.16 0.33 -0.53 16 2 C -0.11 -0.85 1.26 -154.85 -0.19 -1.04 16 3 C 0.53 5.93 6.89 -10.99 -0.08 5.85 16 4 O -0.53 -7.93 15.56 5.56 0.09 -7.84 16 5 N -0.72 -7.48 4.96 -53.80 -0.27 -7.74 16 6 C 0.15 1.91 2.46 -67.93 -0.17 1.75 16 7 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 8 C -0.12 -1.56 5.49 -26.73 -0.15 -1.71 16 9 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 10 C -0.14 -2.33 5.50 -26.73 -0.15 -2.47 16 11 C 0.18 3.44 2.77 -67.93 -0.19 3.25 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -17.43 5.12 -53.42 -0.27 -17.71 16 14 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.13 -1.93 4.86 -26.73 -0.13 -2.06 16 23 C -0.15 -1.10 6.99 -25.91 -0.18 -1.28 16 24 C 0.26 2.19 3.27 -25.92 -0.08 2.11 16 25 F -0.18 -1.59 15.52 2.25 0.03 -1.55 16 26 F -0.19 -1.94 17.41 2.25 0.04 -1.90 16 27 C -0.14 -1.14 6.78 -25.92 -0.18 -1.32 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.47 6.20 -51.93 -0.32 0.15 16 30 H 0.07 0.37 7.04 -51.93 -0.37 0.01 16 31 H 0.40 3.26 7.51 -40.82 -0.31 2.95 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.12 0.91 8.09 -51.93 -0.42 0.49 16 43 H 0.10 0.61 8.10 -51.93 -0.42 0.19 16 44 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.13 1.17 7.43 -51.93 -0.39 0.78 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -31.23 364.42 -7.87 -39.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.12 Total: 8.24 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -1.56 Total: -6.26 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.18 Total: -52.38 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.45 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.23 -7.87 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981451328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.778 kcal (2) G-P(sol) polarization free energy of solvation -31.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds