Wall clock time and date at job start Tue Mar 31 2020 11:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50697 * 112.84441 * 2 1 4 4 O 1.21288 * 120.00017 * 230.32939 * 3 2 1 5 5 N 1.34777 * 120.00270 * 50.33477 * 3 2 1 6 6 C 1.46500 * 120.00270 * 180.02562 * 5 3 2 7 7 H 1.09002 * 109.47129 * 34.99540 * 6 5 3 8 8 C 1.52999 * 109.46944 * 275.00142 * 6 5 3 9 9 C 1.53005 * 109.47159 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47452 * 59.99536 * 9 8 6 11 11 C 1.53002 * 109.46817 * 300.00239 * 10 9 8 12 12 H 1.08992 * 109.47063 * 299.99823 * 11 10 9 13 13 N 1.46499 * 109.46799 * 179.97438 * 11 10 9 14 14 C 1.36943 * 119.99899 * 84.99919 * 13 11 10 15 15 H 1.07991 * 119.99854 * 0.02562 * 14 13 11 16 16 C 1.38811 * 119.99679 * 179.97438 * 14 13 11 17 17 N 1.31614 * 120.00522 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99515 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47219 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47087 * 120.00507 * 18 16 14 21 21 H 1.48505 * 109.47003 * 240.00107 * 18 16 14 22 22 C 1.52997 * 109.47473 * 154.99797 * 6 5 3 23 23 C 1.53775 * 113.61452 * 131.19257 * 2 1 3 24 24 C 1.53959 * 87.01963 * 89.23417 * 23 2 1 25 25 F 1.39901 * 113.53497 * 270.81017 * 24 23 2 26 26 F 1.39898 * 113.66843 * 139.93248 * 24 23 2 27 27 C 1.53782 * 87.11178 * 25.35951 * 24 23 2 28 28 H 1.09003 * 109.47274 * 69.66928 * 1 2 3 29 29 H 1.09006 * 109.47139 * 189.66417 * 1 2 3 30 30 H 1.08994 * 109.47705 * 309.66439 * 1 2 3 31 31 H 0.97000 * 120.00239 * 359.97438 * 5 3 2 32 32 H 1.09000 * 109.47486 * 59.99569 * 8 6 5 33 33 H 1.09002 * 109.46716 * 299.99651 * 8 6 5 34 34 H 1.09002 * 109.46935 * 299.99411 * 9 8 6 35 35 H 1.09001 * 109.46812 * 179.97438 * 9 8 6 36 36 H 1.08993 * 109.47194 * 179.97438 * 10 9 8 37 37 H 1.09002 * 109.46695 * 59.99734 * 10 9 8 38 38 H 0.97006 * 120.00568 * 264.99947 * 13 11 10 39 39 H 0.97004 * 120.00344 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.47153 * 59.99757 * 22 6 5 41 41 H 1.09001 * 109.46832 * 299.99948 * 22 6 5 42 42 H 1.09002 * 113.61552 * 203.74821 * 23 2 1 43 43 H 1.09001 * 113.61827 * 334.66049 * 23 2 1 44 44 H 1.08993 * 113.62175 * 220.09201 * 27 24 23 45 45 H 1.09002 * 113.68783 * 89.19385 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1151 1.3888 0.0000 4 8 2.9684 1.6873 -0.8085 5 7 1.6901 2.2991 0.8985 6 6 2.2585 3.6493 0.8981 7 1 2.4763 3.9516 -0.1263 8 6 3.5501 3.6592 1.7182 9 6 4.1434 5.0695 1.7183 10 6 3.1396 6.0451 2.3360 11 6 1.8481 6.0352 1.5159 12 1 2.0657 6.3378 0.4917 13 7 0.8867 6.9688 2.1077 14 6 0.9308 8.2973 1.7784 15 1 1.6740 8.6566 1.0821 16 6 0.0195 9.1819 2.3388 17 7 -0.8865 8.7439 3.1870 18 14 0.0793 10.9939 1.8889 19 1 1.1826 11.2281 0.9230 20 1 -1.2116 11.3939 1.2734 21 1 0.3147 11.8004 3.1135 22 6 1.2549 4.6253 1.5155 23 6 2.1460 -0.9279 1.0603 24 6 2.0951 -2.0419 -0.0012 25 9 0.8944 -2.7599 -0.0004 26 9 3.2238 -2.8685 -0.0025 27 6 2.1460 -0.9280 -1.0603 28 1 -0.3634 0.3571 -0.9637 29 1 -0.3634 -1.0131 0.1725 30 1 -0.3634 0.6559 0.7910 31 1 1.0074 2.0605 1.5449 32 1 4.2651 2.9638 1.2784 33 1 3.3324 3.3569 2.7425 34 1 4.3611 5.3722 0.6941 35 1 5.0634 5.0765 2.3030 36 1 3.5625 7.0496 2.3366 37 1 2.9220 5.7423 3.3603 38 1 0.2189 6.6461 2.7329 39 1 -1.5231 9.3621 3.5789 40 1 1.0372 4.3231 2.5398 41 1 0.3348 4.6183 0.9312 42 1 3.1585 -0.6476 1.3507 43 1 1.4939 -1.1080 1.9149 44 1 1.4940 -1.1079 -1.9150 45 1 3.1580 -0.6467 -1.3517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981451330.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:46 Heat of formation + Delta-G solvation = -123.116247 kcal Electronic energy + Delta-G solvation = -27093.636979 eV Core-core repulsion = 22974.867671 eV Total energy + Delta-G solvation = -4118.769309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.21123 -47.52835 -40.74404 -38.64432 -37.20287 -34.77587 -33.41001 -31.17585 -30.23873 -28.96898 -27.78893 -26.75507 -24.87636 -23.74227 -22.31710 -21.75514 -20.66506 -19.92207 -19.06966 -18.36473 -17.22498 -17.04778 -16.80291 -16.23834 -16.14206 -15.17742 -14.88536 -14.50402 -14.44988 -14.23253 -14.06030 -13.93910 -13.87067 -13.70385 -13.49752 -13.20855 -12.91460 -12.68380 -12.63122 -12.23757 -12.13501 -12.11252 -11.66895 -11.40649 -11.02940 -10.98078 -10.91451 -10.86728 -10.76889 -10.39350 -10.31350 -10.20658 -10.05799 -9.73347 -9.60151 -9.06523 -8.90243 -6.99370 -5.79969 -3.08645 2.37124 2.88641 3.09526 3.36405 3.41272 3.47543 3.49296 3.77329 3.78399 4.02381 4.53072 4.55231 4.64918 4.87223 4.94932 5.01012 5.04312 5.08399 5.22834 5.28005 5.37741 5.40178 5.46759 5.55697 5.59211 5.64635 5.69653 5.76514 5.82510 5.92702 5.98015 6.09479 6.24590 6.27812 6.46682 6.48695 6.57237 6.68682 6.92880 7.08592 7.39030 7.68754 8.06575 8.38740 9.50128 10.07015 10.41648 11.42791 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028057 B = 0.002514 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.726066 B =11132.878481 C =11639.966057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.533 3.467 4 O -0.535 6.535 5 N -0.717 5.717 6 C 0.147 3.853 7 H 0.088 0.912 8 C -0.123 4.123 9 C -0.115 4.115 10 C -0.137 4.137 11 C 0.184 3.816 12 H 0.048 0.952 13 N -0.725 5.725 14 C -0.237 4.237 15 H 0.071 0.929 16 C -0.014 4.014 17 N -0.933 5.933 18 Si 0.905 3.095 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.292 1.292 22 C -0.129 4.129 23 C -0.148 4.148 24 C 0.256 3.744 25 F -0.176 7.176 26 F -0.188 7.188 27 C -0.139 4.139 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.400 0.600 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.248 -22.185 -4.158 23.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 C 0.318 3.682 4 O -0.411 6.411 5 N -0.366 5.366 6 C 0.043 3.957 7 H 0.106 0.894 8 C -0.162 4.162 9 C -0.154 4.154 10 C -0.177 4.177 11 C 0.073 3.927 12 H 0.066 0.934 13 N -0.365 5.365 14 C -0.368 4.368 15 H 0.089 0.911 16 C -0.210 4.210 17 N -0.582 5.582 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 C -0.168 4.168 23 C -0.186 4.186 24 C 0.220 3.780 25 F -0.157 7.157 26 F -0.169 7.169 27 C -0.177 4.177 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.234 0.766 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.217 0.783 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.135 0.865 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.871 -21.808 -4.821 23.093 hybrid contribution -0.605 0.608 0.458 0.972 sum 5.267 -21.200 -4.363 22.275 Atomic orbital electron populations 1.21789 0.90063 1.04106 1.03738 1.21883 0.98004 0.92843 0.98084 1.19864 0.82029 0.85577 0.80738 1.90717 1.31941 1.79675 1.38807 1.46150 1.42601 1.12679 1.35220 1.21077 0.93310 0.80224 1.01058 0.89372 1.21878 0.96526 0.97922 0.99880 1.21487 0.98402 0.94275 1.01186 1.22293 0.96909 0.98614 0.99915 1.20082 0.89161 0.87499 0.95947 0.93369 1.42412 1.36352 1.04512 1.53211 1.19287 1.12304 0.84199 1.20997 0.91091 1.24735 0.98347 0.98118 0.99798 1.69664 1.20840 1.33922 1.33778 0.86138 0.77225 0.85449 0.77526 1.20529 1.21885 1.21893 1.22084 0.98059 0.95785 1.00883 1.24159 1.04825 0.92092 0.97523 1.21980 0.71795 0.83166 1.01073 1.93001 1.44976 1.80495 1.97249 1.93024 1.50820 1.75798 1.97224 1.24068 1.05657 0.90829 0.97163 0.90850 0.90253 0.91021 0.76576 0.92228 0.92042 0.92164 0.92485 0.91871 0.92663 0.78340 0.93581 0.91695 0.91282 0.86505 0.87800 0.88210 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.95 37.16 0.33 -0.60 16 2 C -0.10 -0.84 1.25 -154.85 -0.19 -1.03 16 3 C 0.53 5.93 6.88 -10.99 -0.08 5.85 16 4 O -0.53 -7.93 15.57 5.55 0.09 -7.85 16 5 N -0.72 -7.47 4.97 -53.81 -0.27 -7.73 16 6 C 0.15 1.91 2.45 -67.93 -0.17 1.75 16 7 H 0.09 1.32 7.58 -51.93 -0.39 0.92 16 8 C -0.12 -1.56 5.50 -26.73 -0.15 -1.70 16 9 C -0.11 -1.58 5.92 -26.73 -0.16 -1.74 16 10 C -0.14 -2.33 5.50 -26.73 -0.15 -2.47 16 11 C 0.18 3.44 2.77 -67.96 -0.19 3.25 16 12 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 13 N -0.72 -17.43 5.12 -53.45 -0.27 -17.71 16 14 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 16 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.65 13.06 55.49 0.72 -26.93 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 C -0.13 -1.93 4.85 -26.76 -0.13 -2.06 16 23 C -0.15 -1.03 7.00 -25.83 -0.18 -1.21 16 24 C 0.26 2.13 3.27 -25.82 -0.08 2.05 16 25 F -0.18 -1.57 15.52 2.25 0.03 -1.54 16 26 F -0.19 -1.87 17.41 2.25 0.04 -1.83 16 27 C -0.14 -1.14 6.78 -25.92 -0.18 -1.32 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.49 6.20 -51.93 -0.32 0.17 16 30 H 0.07 0.41 7.11 -51.93 -0.37 0.04 16 31 H 0.40 3.25 7.59 -40.82 -0.31 2.94 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.38 9.76 7.80 -40.82 -0.32 9.44 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.12 0.81 8.09 -51.93 -0.42 0.39 16 43 H 0.10 0.55 8.10 -51.93 -0.42 0.13 16 44 H 0.10 0.72 8.10 -51.93 -0.42 0.30 16 45 H 0.13 1.15 7.45 -51.93 -0.39 0.76 16 LS Contribution 364.59 15.07 5.49 5.49 Total: -1.00 -31.23 364.59 -7.88 -39.10 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -7.13 Total: 8.17 kcal Atomic # 6 Polarization: -4.73 SS G_CDS: -1.56 Total: -6.29 kcal Atomic # 7 Polarization: -52.55 SS G_CDS: 0.18 Total: -52.37 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.85 kcal Atomic # 9 Polarization: -3.45 SS G_CDS: 0.07 Total: -3.37 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.23 -7.88 -39.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981451330.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.012 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds