Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47118 * 274.96606 * 3 2 1 5 5 H 1.48492 * 109.47306 * 34.96426 * 3 2 1 6 6 H 1.48498 * 109.47393 * 154.96943 * 3 2 1 7 7 C 1.38818 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99696 * 194.60708 * 7 2 1 9 9 N 1.36941 * 119.99733 * 14.60143 * 7 2 1 10 10 C 1.43463 * 118.93650 * 204.99382 * 9 7 2 11 11 C 1.53796 * 107.96017 * 273.63506 * 10 9 7 12 12 C 1.47721 * 111.83544 * 281.59975 * 11 10 9 13 13 N 1.48209 * 110.06348 * 58.36746 * 12 11 10 14 14 C 1.34785 * 119.96850 * 102.59629 * 13 12 11 15 15 O 1.21282 * 119.99553 * 359.72054 * 14 13 12 16 16 C 1.50701 * 119.99704 * 179.44483 * 14 13 12 17 17 C 1.53007 * 109.46703 * 180.27580 * 16 14 13 18 18 H 1.08997 * 110.02000 * 53.60634 * 17 16 14 19 19 C 1.54263 * 110.02988 * 175.00157 * 17 16 14 20 20 C 1.54888 * 104.19441 * 142.89359 * 19 17 16 21 21 C 1.54890 * 102.75141 * 322.05536 * 20 19 17 22 22 C 1.53874 * 110.02891 * 292.16666 * 17 16 14 23 23 F 1.39896 * 110.03662 * 0.02562 * 22 17 16 24 24 F 1.39907 * 110.03135 * 121.43274 * 22 17 16 25 25 C 1.43622 * 120.06494 * 282.31330 * 13 12 11 26 26 C 1.48859 * 118.94148 * 24.97823 * 9 7 2 27 27 H 0.96999 * 119.99505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.76782 * 33.24997 * 10 9 7 29 29 H 1.09006 * 109.76001 * 154.02086 * 10 9 7 30 30 H 1.08995 * 109.00847 * 42.27354 * 11 10 9 31 31 H 1.09001 * 109.00659 * 161.14135 * 11 10 9 32 32 H 1.08995 * 109.39930 * 298.22525 * 12 11 10 33 33 H 1.08997 * 109.52776 * 178.59153 * 12 11 10 34 34 H 1.08997 * 109.47492 * 300.27299 * 16 14 13 35 35 H 1.08992 * 109.47209 * 60.27780 * 16 14 13 36 36 H 1.09001 * 110.48475 * 261.56798 * 19 17 16 37 37 H 1.09005 * 110.48989 * 24.08466 * 19 17 16 38 38 H 1.08992 * 110.75969 * 80.37004 * 20 19 17 39 39 H 1.09007 * 110.75917 * 203.55704 * 20 19 17 40 40 H 1.08997 * 110.48825 * 156.61744 * 21 20 19 41 41 H 1.08998 * 110.48769 * 279.26553 * 21 20 19 42 42 H 1.09000 * 108.87858 * 211.70284 * 25 13 12 43 43 H 1.08999 * 108.87134 * 330.24419 * 25 13 12 44 44 H 1.08998 * 109.47982 * 20.63341 * 26 9 7 45 45 H 1.09001 * 109.47722 * 260.60021 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3929 2.1069 -1.3948 5 1 1.5043 2.6200 0.8023 6 1 3.5964 1.4121 0.5924 7 6 2.0103 -1.2022 -0.0005 8 1 3.0641 -1.2174 0.2353 9 7 1.3587 -2.3688 -0.3000 10 6 1.8821 -3.6056 0.2046 11 6 2.9388 -4.1144 -0.7902 12 6 2.3202 -4.7505 -1.9713 13 7 1.4265 -3.7878 -2.6576 14 6 1.8350 -3.1779 -3.7880 15 8 2.9354 -3.4133 -4.2403 16 6 0.9219 -2.2083 -4.4933 17 6 1.6197 -1.6676 -5.7430 18 1 1.9635 -2.4937 -6.3654 19 6 0.6519 -0.7709 -6.5423 20 6 1.5501 0.3685 -7.0845 21 6 2.5238 0.6257 -5.9077 22 6 2.8099 -0.7797 -5.3394 23 9 2.9135 -0.7214 -3.9455 24 9 3.9933 -1.2864 -5.8873 25 6 0.1232 -3.5086 -2.1226 26 6 0.1299 -2.3128 -1.1384 27 1 -0.4849 0.8401 0.0004 28 1 2.3423 -3.4408 1.1789 29 1 1.0784 -4.3364 0.2947 30 1 3.5512 -3.2746 -1.1181 31 1 3.5756 -4.8438 -0.2896 32 1 1.7408 -5.6173 -1.6538 33 1 3.0997 -5.0739 -2.6611 34 1 0.0033 -2.7189 -4.7823 35 1 0.6831 -1.3818 -3.8241 36 1 0.2060 -1.3295 -7.3652 37 1 -0.1238 -0.3701 -5.8898 38 1 2.0936 0.0432 -7.9715 39 1 0.9578 1.2577 -7.3008 40 1 3.4439 1.0863 -6.2675 41 1 2.0518 1.2539 -5.1523 42 1 -0.5552 -3.2840 -2.9457 43 1 -0.2396 -4.3928 -1.5985 44 1 0.1158 -1.3792 -1.7007 45 1 -0.7502 -2.3647 -0.4974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981821554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -113.796441 kcal Electronic energy + Delta-G solvation = -29813.408726 eV Core-core repulsion = 25695.043554 eV Total energy + Delta-G solvation = -4118.365172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.36118 -46.40632 -39.71908 -37.57173 -36.65356 -34.14940 -32.89781 -31.41210 -30.70807 -27.85129 -27.52396 -26.15622 -24.91818 -23.61455 -21.87084 -21.24329 -19.99584 -19.68370 -18.32659 -17.31311 -16.98317 -16.54526 -16.09464 -15.83454 -15.68197 -14.95168 -14.54372 -14.23293 -13.94981 -13.78927 -13.72232 -13.45899 -13.17888 -12.91117 -12.76477 -12.58037 -12.42282 -12.17535 -11.96086 -11.75592 -11.55739 -11.37128 -11.30797 -11.23360 -11.18673 -10.93192 -10.75671 -10.70570 -10.48758 -10.23905 -10.15934 -10.11900 -9.79530 -9.64873 -9.19071 -8.42284 -7.94991 -6.65227 -5.74952 -3.15530 3.21129 3.41304 3.47443 3.51219 3.60786 4.03202 4.12531 4.39743 4.51404 4.55554 4.96791 5.05796 5.11946 5.24499 5.32455 5.39718 5.40043 5.46575 5.52487 5.66039 5.68521 5.72445 5.77615 5.82682 5.86276 5.91246 5.93277 5.98799 6.12564 6.14625 6.19304 6.31901 6.35928 6.49732 6.60168 6.86980 6.99535 7.12100 7.42895 7.52557 7.85844 8.06791 8.48483 8.78248 9.25690 9.93284 10.37850 11.33150 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.007124 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.880994 B = 3929.562389 C = 5147.801080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.004 3.996 3 Si 0.896 3.104 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.163 3.837 11 C -0.169 4.169 12 C 0.131 3.869 13 N -0.585 5.585 14 C 0.523 3.477 15 O -0.552 6.552 16 C -0.135 4.135 17 C -0.115 4.115 18 H 0.102 0.898 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.167 4.167 22 C 0.292 3.708 23 F -0.181 7.181 24 F -0.197 7.197 25 C 0.079 3.921 26 C 0.165 3.835 27 H 0.251 0.749 28 H 0.045 0.955 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.227 -4.047 -12.169 13.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.193 4.193 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.310 5.310 10 C 0.035 3.965 11 C -0.210 4.210 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.311 3.689 15 O -0.431 6.431 16 C -0.175 4.175 17 C -0.134 4.134 18 H 0.121 0.879 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.205 4.205 22 C 0.255 3.745 23 F -0.162 7.162 24 F -0.178 7.178 25 C -0.047 4.047 26 C 0.039 3.961 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -1.742 -4.071 -12.342 13.112 hybrid contribution 0.589 0.933 0.294 1.142 sum -1.153 -3.138 -12.048 12.503 Atomic orbital electron populations 1.70017 1.04993 1.25126 1.55564 1.24894 0.95276 0.98002 1.01147 0.86343 0.79252 0.84076 0.77636 1.21427 1.21946 1.20539 1.19176 0.92013 0.84853 1.41180 0.91945 1.43614 1.29006 1.01965 1.56445 1.20275 0.93629 0.88362 0.94246 1.21982 1.00777 1.00655 0.97628 1.20630 0.93603 0.90273 0.94585 1.47318 1.16988 1.43065 1.24262 1.20299 0.87396 0.80451 0.80724 1.90656 1.21673 1.63912 1.66846 1.21746 0.98795 1.00280 0.96679 1.22571 0.94404 0.98698 0.97754 0.87944 1.22443 0.97533 0.96155 0.99556 1.22435 0.97140 0.99096 0.97136 1.23417 1.02084 0.95093 0.99953 1.21545 0.82871 0.94191 0.75880 1.93119 1.96376 1.96976 1.29720 1.92988 1.50503 1.89024 1.85280 1.22210 0.83239 1.00973 0.98256 1.21912 0.88806 0.94667 0.90710 0.93873 0.93684 0.94924 0.91265 0.92910 0.92357 0.90618 0.88626 0.87242 0.90351 0.90121 0.90733 0.90149 0.89337 0.88352 0.91780 0.92207 0.90495 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.44 10.90 55.49 0.60 -24.83 16 2 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 3 Si 0.90 22.25 29.58 -169.99 -5.03 17.23 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.64 9.28 -15.06 -0.14 -6.77 16 8 H 0.06 1.76 7.87 -52.49 -0.41 1.35 16 9 N -0.59 -14.21 2.54 -171.99 -0.44 -14.65 16 10 C 0.16 3.37 5.63 -5.23 -0.03 3.34 16 11 C -0.17 -3.21 5.66 -28.87 -0.16 -3.37 16 12 C 0.13 2.28 5.74 -5.65 -0.03 2.25 16 13 N -0.59 -10.77 2.45 -176.35 -0.43 -11.20 16 14 C 0.52 10.06 6.57 -10.98 -0.07 9.99 16 15 O -0.55 -12.18 14.01 5.56 0.08 -12.10 16 16 C -0.14 -2.13 3.18 -27.88 -0.09 -2.21 16 17 C -0.11 -1.66 2.40 -89.50 -0.21 -1.87 16 18 H 0.10 1.51 7.80 -51.93 -0.41 1.11 16 19 C -0.12 -1.25 6.36 -25.07 -0.16 -1.41 16 20 C -0.12 -1.21 6.91 -24.74 -0.17 -1.38 16 21 C -0.17 -2.23 6.40 -25.07 -0.16 -2.39 16 22 C 0.29 5.01 1.80 -25.61 -0.05 4.97 16 23 F -0.18 -3.98 14.09 2.25 0.03 -3.94 16 24 F -0.20 -3.74 16.76 2.25 0.04 -3.70 16 25 C 0.08 1.36 5.06 -4.58 -0.02 1.34 16 26 C 0.16 3.64 5.18 -1.75 -0.01 3.63 16 27 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 28 H 0.04 0.95 8.02 -51.93 -0.42 0.54 16 29 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 30 H 0.07 1.58 7.91 -51.93 -0.41 1.17 16 31 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.86 8.05 -51.93 -0.42 0.45 16 33 H 0.08 1.37 7.13 -51.93 -0.37 1.00 16 34 H 0.10 1.19 7.36 -51.93 -0.38 0.81 16 35 H 0.11 1.93 6.83 -51.93 -0.35 1.57 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.82 7.85 -51.93 -0.41 0.41 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 41 H 0.10 1.35 8.12 -51.93 -0.42 0.92 16 42 H 0.06 0.94 6.37 -51.93 -0.33 0.61 16 43 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 44 H 0.08 1.89 5.74 -51.93 -0.30 1.60 16 45 H 0.04 0.95 8.00 -51.93 -0.42 0.53 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -32.46 348.10 -8.38 -40.84 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.09 Total: 1.00 kcal Atomic # 6 Polarization: 7.52 SS G_CDS: -1.40 Total: 6.12 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: -0.26 Total: -50.68 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 9 Polarization: -7.72 SS G_CDS: 0.07 Total: -7.65 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.23 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.46 -8.38 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981821554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.961 kcal (2) G-P(sol) polarization free energy of solvation -32.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds