Wall clock time and date at job start Tue Mar 31 2020 10:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 120.00280 * 2 1 4 4 H 1.48502 * 109.47118 * 274.96606 * 3 2 1 5 5 H 1.48492 * 109.47306 * 34.96426 * 3 2 1 6 6 H 1.48498 * 109.47393 * 154.96943 * 3 2 1 7 7 C 1.38818 * 119.99821 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99696 * 194.60708 * 7 2 1 9 9 N 1.36941 * 119.99733 * 14.60143 * 7 2 1 10 10 C 1.43463 * 118.93650 * 204.99382 * 9 7 2 11 11 C 1.53796 * 107.96017 * 273.63506 * 10 9 7 12 12 C 1.47721 * 111.83544 * 281.59975 * 11 10 9 13 13 N 1.48209 * 110.06348 * 58.36746 * 12 11 10 14 14 C 1.34785 * 119.96850 * 102.59629 * 13 12 11 15 15 O 1.21282 * 119.99553 * 359.72054 * 14 13 12 16 16 C 1.50701 * 119.99704 * 179.44483 * 14 13 12 17 17 C 1.53007 * 109.46703 * 180.27580 * 16 14 13 18 18 H 1.08997 * 110.02000 * 53.60634 * 17 16 14 19 19 C 1.54263 * 110.02988 * 175.00157 * 17 16 14 20 20 C 1.54888 * 104.19441 * 142.89359 * 19 17 16 21 21 C 1.54890 * 102.75141 * 322.05536 * 20 19 17 22 22 C 1.53874 * 110.02891 * 292.16666 * 17 16 14 23 23 F 1.39896 * 110.03662 * 0.02562 * 22 17 16 24 24 F 1.39907 * 110.03135 * 121.43274 * 22 17 16 25 25 C 1.43622 * 120.06494 * 282.31330 * 13 12 11 26 26 C 1.48859 * 118.94148 * 24.97823 * 9 7 2 27 27 H 0.96999 * 119.99505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.76782 * 33.24997 * 10 9 7 29 29 H 1.09006 * 109.76001 * 154.02086 * 10 9 7 30 30 H 1.08995 * 109.00847 * 42.27354 * 11 10 9 31 31 H 1.09001 * 109.00659 * 161.14135 * 11 10 9 32 32 H 1.08995 * 109.39930 * 298.22525 * 12 11 10 33 33 H 1.08997 * 109.52776 * 178.59153 * 12 11 10 34 34 H 1.08997 * 109.47492 * 300.27299 * 16 14 13 35 35 H 1.08992 * 109.47209 * 60.27780 * 16 14 13 36 36 H 1.09001 * 110.48475 * 261.56798 * 19 17 16 37 37 H 1.09005 * 110.48989 * 24.08466 * 19 17 16 38 38 H 1.08992 * 110.75969 * 80.37004 * 20 19 17 39 39 H 1.09007 * 110.75917 * 203.55704 * 20 19 17 40 40 H 1.08997 * 110.48825 * 156.61744 * 21 20 19 41 41 H 1.08998 * 110.48769 * 279.26553 * 21 20 19 42 42 H 1.09000 * 108.87858 * 211.70284 * 25 13 12 43 43 H 1.08999 * 108.87134 * 330.24419 * 25 13 12 44 44 H 1.08998 * 109.47982 * 20.63341 * 26 9 7 45 45 H 1.09001 * 109.47722 * 260.60021 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3929 2.1069 -1.3948 5 1 1.5043 2.6200 0.8023 6 1 3.5964 1.4121 0.5924 7 6 2.0103 -1.2022 -0.0005 8 1 3.0641 -1.2174 0.2353 9 7 1.3587 -2.3688 -0.3000 10 6 1.8821 -3.6056 0.2046 11 6 2.9388 -4.1144 -0.7902 12 6 2.3202 -4.7505 -1.9713 13 7 1.4265 -3.7878 -2.6576 14 6 1.8350 -3.1779 -3.7880 15 8 2.9354 -3.4133 -4.2403 16 6 0.9219 -2.2083 -4.4933 17 6 1.6197 -1.6676 -5.7430 18 1 1.9635 -2.4937 -6.3654 19 6 0.6519 -0.7709 -6.5423 20 6 1.5501 0.3685 -7.0845 21 6 2.5238 0.6257 -5.9077 22 6 2.8099 -0.7797 -5.3394 23 9 2.9135 -0.7214 -3.9455 24 9 3.9933 -1.2864 -5.8873 25 6 0.1232 -3.5086 -2.1226 26 6 0.1299 -2.3128 -1.1384 27 1 -0.4849 0.8401 0.0004 28 1 2.3423 -3.4408 1.1789 29 1 1.0784 -4.3364 0.2947 30 1 3.5512 -3.2746 -1.1181 31 1 3.5756 -4.8438 -0.2896 32 1 1.7408 -5.6173 -1.6538 33 1 3.0997 -5.0739 -2.6611 34 1 0.0033 -2.7189 -4.7823 35 1 0.6831 -1.3818 -3.8241 36 1 0.2060 -1.3295 -7.3652 37 1 -0.1238 -0.3701 -5.8898 38 1 2.0936 0.0432 -7.9715 39 1 0.9578 1.2577 -7.3008 40 1 3.4439 1.0863 -6.2675 41 1 2.0518 1.2539 -5.1523 42 1 -0.5552 -3.2840 -2.9457 43 1 -0.2396 -4.3928 -1.5985 44 1 0.1158 -1.3792 -1.7007 45 1 -0.7502 -2.3647 -0.4974 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981821554.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:33 Heat of formation + Delta-G solvation = -132.537448 kcal Electronic energy + Delta-G solvation = -29814.221397 eV Core-core repulsion = 25695.043554 eV Total energy + Delta-G solvation = -4119.177843 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.80678 -47.89702 -41.18650 -38.87207 -38.06251 -35.89366 -34.47025 -32.92836 -32.32084 -29.27814 -28.80350 -27.60946 -26.43512 -25.41662 -23.36662 -22.19442 -21.50714 -21.18038 -19.77984 -18.77896 -18.59850 -17.96164 -17.62997 -17.43006 -16.99752 -16.60881 -16.04321 -15.66261 -15.59406 -15.26277 -15.02632 -14.90791 -14.70849 -14.41731 -14.26783 -14.02242 -13.91440 -13.68788 -13.42455 -13.23627 -13.06133 -12.87087 -12.79066 -12.52600 -12.48961 -12.35767 -12.20200 -12.15009 -12.07037 -11.71944 -11.67503 -11.59233 -11.43159 -11.41281 -10.71215 -10.45631 -9.47879 -8.62088 -7.84233 -5.25637 1.38190 1.41611 1.48578 1.73789 2.24282 2.50544 2.87366 3.03318 3.27731 3.29400 3.37224 3.67830 3.78415 3.94872 4.09176 4.13409 4.25194 4.28362 4.32700 4.32718 4.44644 4.49854 4.54463 4.59366 4.65933 4.70594 4.75479 4.79105 4.86195 4.94668 5.04341 5.05727 5.08519 5.14530 5.23619 5.33384 5.34366 5.48597 5.61795 5.75681 5.86241 6.41818 6.61068 7.20955 7.32373 7.98605 8.34527 9.19692 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.011738 B = 0.007124 C = 0.005438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.880994 B = 3929.562389 C = 5147.801080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.034 4.034 3 Si 0.941 3.059 4 H -0.290 1.290 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.251 4.251 8 H 0.041 0.959 9 N -0.603 5.603 10 C 0.160 3.840 11 C -0.154 4.154 12 C 0.127 3.873 13 N -0.589 5.589 14 C 0.511 3.489 15 O -0.588 6.588 16 C -0.130 4.130 17 C -0.111 4.111 18 H 0.099 0.901 19 C -0.111 4.111 20 C -0.111 4.111 21 C -0.166 4.166 22 C 0.265 3.735 23 F -0.218 7.218 24 F -0.214 7.214 25 C 0.089 3.911 26 C 0.171 3.829 27 H 0.250 0.750 28 H 0.033 0.967 29 H 0.061 0.939 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.136 0.864 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.071 -4.991 -13.824 15.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.771 3.229 4 H -0.217 1.217 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.059 0.941 9 N -0.325 5.325 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.006 3.994 13 N -0.319 5.319 14 C 0.301 3.699 15 O -0.469 6.469 16 C -0.169 4.169 17 C -0.130 4.130 18 H 0.117 0.883 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.204 4.204 22 C 0.229 3.771 23 F -0.199 7.199 24 F -0.195 7.195 25 C -0.036 4.036 26 C 0.046 3.954 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.100 0.900 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.107 0.893 36 H 0.128 0.872 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.064 0.936 45 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.597 -5.035 -13.989 15.296 hybrid contribution 1.257 1.186 0.873 1.936 sum -2.340 -3.849 -13.116 13.868 Atomic orbital electron populations 1.70108 1.05433 1.25291 1.56260 1.25341 0.96011 0.99867 1.01747 0.85655 0.78237 0.81772 0.77272 1.21721 1.21277 1.20938 1.19207 0.91384 0.86679 1.40899 0.94080 1.43833 1.29372 1.02057 1.57269 1.20415 0.94646 0.87716 0.93941 1.21792 1.00036 0.99545 0.98140 1.20731 0.94065 0.91142 0.93458 1.47489 1.17496 1.42911 1.24027 1.21002 0.87425 0.80478 0.81002 1.90631 1.23277 1.65094 1.67927 1.21770 0.99743 0.98927 0.96492 1.22626 0.94052 0.98860 0.97494 0.88295 1.22493 0.96637 0.95682 0.99961 1.22489 0.96416 1.00104 0.95787 1.23459 1.03392 0.92522 1.01031 1.22467 0.83225 0.97280 0.74110 1.93038 1.96579 1.97299 1.32962 1.92938 1.51812 1.89505 1.85282 1.22091 0.83350 0.99761 0.98417 1.21755 0.87199 0.95710 0.90787 0.94099 0.94877 0.92037 0.96276 0.90023 0.88352 0.91482 0.84632 0.89324 0.87157 0.89528 0.89483 0.87497 0.88844 0.89185 0.88505 0.89367 0.93640 0.95798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.38 10.90 21.65 0.24 -52.14 16 2 C -0.03 -1.91 4.95 84.86 0.42 -1.49 16 3 Si 0.94 46.86 29.58 68.60 2.03 48.89 16 4 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 7 C -0.25 -14.18 9.28 84.03 0.78 -13.40 16 8 H 0.04 2.45 7.87 -2.91 -0.02 2.42 16 9 N -0.60 -29.41 2.54 -698.05 -1.77 -31.18 16 10 C 0.16 6.49 5.63 87.21 0.49 6.98 16 11 C -0.15 -5.77 5.66 29.21 0.17 -5.60 16 12 C 0.13 4.22 5.74 84.40 0.48 4.71 16 13 N -0.59 -20.79 2.45 -830.23 -2.03 -22.82 16 14 C 0.51 19.43 6.57 87.66 0.58 20.01 16 15 O -0.59 -26.38 14.01 -3.04 -0.04 -26.42 16 16 C -0.13 -3.91 3.18 29.85 0.10 -3.82 16 17 C -0.11 -3.06 2.40 -10.07 -0.02 -3.08 16 18 H 0.10 2.79 7.80 -2.39 -0.02 2.77 16 19 C -0.11 -1.95 6.36 31.67 0.20 -1.74 16 20 C -0.11 -1.89 6.91 31.89 0.22 -1.67 16 21 C -0.17 -4.32 6.40 31.67 0.20 -4.12 16 22 C 0.27 9.25 1.80 31.32 0.06 9.31 16 23 F -0.22 -10.04 14.09 44.97 0.63 -9.40 16 24 F -0.21 -8.39 16.76 44.97 0.75 -7.63 16 25 C 0.09 2.83 5.06 87.55 0.44 3.28 16 26 C 0.17 7.48 5.18 86.56 0.45 7.93 16 27 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 28 H 0.03 1.40 8.02 -2.39 -0.02 1.38 16 29 H 0.06 2.15 7.58 -2.38 -0.02 2.13 16 30 H 0.02 0.88 7.91 -2.39 -0.02 0.86 16 31 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.10 2.51 8.05 -2.39 -0.02 2.49 16 33 H 0.07 2.36 7.13 -2.39 -0.02 2.35 16 34 H 0.14 2.89 7.36 -2.39 -0.02 2.87 16 35 H 0.09 3.11 6.83 -2.39 -0.02 3.10 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.09 1.46 7.85 -2.38 -0.02 1.44 16 38 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.09 2.27 8.11 -2.39 -0.02 2.25 16 41 H 0.09 2.46 8.12 -2.39 -0.02 2.45 16 42 H 0.10 2.48 6.37 -2.39 -0.02 2.46 16 43 H 0.09 2.37 7.72 -2.39 -0.02 2.35 16 44 H 0.05 2.27 5.74 -2.39 -0.01 2.25 16 45 H 0.02 1.12 8.00 -2.39 -0.02 1.10 16 Total: -1.00 -75.09 348.10 5.35 -69.75 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.98 Total: 13.67 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 4.56 Total: 17.29 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -3.57 Total: -106.14 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.04 Total: -26.42 kcal Atomic # 9 Polarization: -18.42 SS G_CDS: 1.39 Total: -17.04 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -75.09 5.35 -69.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981821554.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.790 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds