Wall clock time and date at job start Tue Mar 31 2020 11:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00012 * 2 1 3 5 5 O 1.21282 * 120.00357 * 7.16972 * 4 2 1 6 6 N 1.34775 * 119.99702 * 187.16568 * 4 2 1 7 7 C 1.47678 * 134.45300 * 175.72737 * 6 4 2 8 8 C 1.53444 * 85.97469 * 155.71470 * 7 6 4 9 9 C 1.47669 * 134.45855 * 355.73589 * 6 4 2 10 10 C 1.52627 * 113.71618 * 268.85688 * 8 7 6 11 11 C 1.53180 * 109.35380 * 171.27220 * 10 8 7 12 12 C 1.52670 * 109.43026 * 58.92807 * 11 10 8 13 13 N 1.46900 * 109.34177 * 303.76674 * 12 11 10 14 14 C 1.36934 * 120.69292 * 235.30705 * 13 12 11 15 15 H 1.08003 * 120.00423 * 151.37325 * 14 13 12 16 16 C 1.38813 * 119.99854 * 331.38574 * 14 13 12 17 17 N 1.31625 * 120.00073 * 144.50745 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 324.50150 * 16 14 13 19 19 H 1.48503 * 109.47182 * 270.00438 * 18 16 14 20 20 H 1.48504 * 109.46889 * 30.00179 * 18 16 14 21 21 H 1.48496 * 109.47465 * 150.00415 * 18 16 14 22 22 C 1.47116 * 118.61968 * 55.04226 * 13 12 11 23 23 C 1.52997 * 109.47028 * 239.99805 * 2 1 3 24 24 F 1.39902 * 109.47276 * 301.56986 * 23 2 1 25 25 F 1.39896 * 109.47340 * 61.56802 * 23 2 1 26 26 H 1.09005 * 109.46909 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46800 * 59.99683 * 1 2 3 28 28 H 1.09000 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 185.85506 * 3 2 1 30 30 H 1.09006 * 109.46988 * 305.84984 * 3 2 1 31 31 H 1.08999 * 109.47553 * 65.85319 * 3 2 1 32 32 H 1.09000 * 113.79115 * 41.45601 * 7 6 4 33 33 H 1.09001 * 113.79454 * 269.98120 * 7 6 4 34 34 H 1.09005 * 113.79759 * 90.01571 * 9 6 4 35 35 H 1.09006 * 113.79039 * 318.54747 * 9 6 4 36 36 H 1.08997 * 109.48763 * 291.23229 * 10 8 7 37 37 H 1.08999 * 109.49320 * 51.30765 * 10 8 7 38 38 H 1.08999 * 109.49134 * 179.02178 * 11 10 8 39 39 H 1.09006 * 109.49352 * 299.07142 * 11 10 8 40 40 H 1.09004 * 109.44255 * 183.78706 * 12 11 10 41 41 H 1.08998 * 109.37195 * 63.70709 * 12 11 10 42 42 H 0.96994 * 119.99536 * 354.90075 * 17 16 14 43 43 H 1.09004 * 109.63868 * 68.57173 * 22 13 12 44 44 H 1.08993 * 109.63970 * 189.18989 * 22 13 12 45 45 H 1.08997 * 109.47268 * 181.57452 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2520 -1.2835 1.9609 6 7 3.3488 -0.7090 1.5192 7 6 4.1616 -1.2149 2.6436 8 6 5.3236 -1.2589 1.6424 9 6 4.5565 -0.2008 0.8380 10 6 5.4616 -2.5966 0.9207 11 6 6.4986 -2.4647 -0.1990 12 6 7.8385 -2.0401 0.3971 13 7 7.6615 -0.7928 1.1527 14 6 8.4224 0.3099 0.8695 15 1 8.0293 1.2989 1.0533 16 6 9.6988 0.1565 0.3461 17 7 10.1573 1.0208 -0.5344 18 14 10.7660 -1.2763 0.8914 19 1 11.5685 -0.8738 2.0744 20 1 9.9013 -2.4295 1.2491 21 1 11.6766 -1.6648 -0.2154 22 6 6.6456 -0.7512 2.2160 23 6 2.0400 -0.7213 -1.2492 24 9 1.5444 -2.0294 -1.2674 25 9 1.6034 -0.0414 -2.3912 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1250 1.4442 -0.1048 30 1 1.5937 1.9856 -0.8330 31 1 1.7649 1.9252 0.9377 32 1 3.8530 -2.1968 3.0024 33 1 4.3002 -0.4910 3.4467 34 1 4.8126 0.8248 1.1039 35 1 4.5616 -0.3770 -0.2377 36 1 5.7856 -3.3598 1.6282 37 1 4.4997 -2.8806 0.4939 38 1 6.6117 -3.4235 -0.7049 39 1 6.1671 -1.7126 -0.9151 40 1 8.5586 -1.8809 -0.4056 41 1 8.2014 -2.8220 1.0641 42 1 9.5783 1.7215 -0.8730 43 1 6.9550 -1.3897 3.0435 44 1 6.5235 0.2738 2.5660 45 1 3.1296 -0.7458 -1.2352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982000423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:48 Heat of formation + Delta-G solvation = -84.096061 kcal Electronic energy + Delta-G solvation = -28887.953736 eV Core-core repulsion = 24770.876469 eV Total energy + Delta-G solvation = -4117.077267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20550 -47.15861 -40.98798 -38.87534 -36.15686 -35.34884 -32.85986 -30.96237 -30.49867 -27.73825 -26.88438 -26.38225 -26.05056 -25.18839 -22.51286 -22.05817 -20.83618 -19.18617 -18.30730 -17.67361 -17.56496 -17.34160 -17.25144 -16.23404 -15.69797 -15.44569 -14.97743 -14.28493 -14.16850 -13.99392 -13.75905 -13.68779 -13.60615 -13.52734 -13.30709 -13.21620 -12.89691 -12.63459 -12.54620 -12.32542 -12.19425 -12.08525 -11.89279 -11.68630 -11.60071 -11.45311 -10.97632 -10.75784 -10.62101 -10.33874 -10.19037 -9.88063 -9.73244 -9.66989 -9.29604 -8.73332 -8.35333 -7.07152 -6.43300 -3.34421 2.34104 2.65395 3.46594 3.51814 3.53763 3.66796 3.89344 3.90778 4.17399 4.37308 4.56691 4.59592 4.73129 4.83687 4.91073 4.94278 5.06570 5.26529 5.32556 5.35236 5.39021 5.45348 5.48580 5.50853 5.53055 5.60584 5.62760 5.74650 5.78361 5.80859 5.95904 5.98657 6.14099 6.27571 6.29556 6.41269 6.49993 6.55067 6.75532 6.90176 7.60291 7.96020 7.98892 8.37868 8.94268 9.55897 10.15791 10.96899 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.004103 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.090291 B = 6822.562447 C = 7114.040693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.128 4.128 3 C -0.146 4.146 4 C 0.546 3.454 5 O -0.532 6.532 6 N -0.639 5.639 7 C 0.116 3.884 8 C -0.102 4.102 9 C 0.116 3.884 10 C -0.085 4.085 11 C -0.138 4.138 12 C 0.143 3.857 13 N -0.596 5.596 14 C -0.363 4.363 15 H 0.064 0.936 16 C 0.007 3.993 17 N -0.897 5.897 18 Si 1.015 2.985 19 H -0.298 1.298 20 H -0.269 1.269 21 H -0.295 1.295 22 C 0.160 3.840 23 C 0.272 3.728 24 F -0.197 7.197 25 F -0.196 7.196 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.267 0.733 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.014 -2.612 0.991 15.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.132 4.132 3 C -0.203 4.203 4 C 0.334 3.666 5 O -0.408 6.408 6 N -0.374 5.374 7 C -0.006 4.006 8 C -0.105 4.105 9 C -0.006 4.006 10 C -0.123 4.123 11 C -0.178 4.178 12 C 0.017 3.983 13 N -0.320 5.320 14 C -0.491 4.491 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.534 5.534 18 Si 0.845 3.155 19 H -0.226 1.226 20 H -0.195 1.195 21 H -0.221 1.221 22 C 0.033 3.967 23 C 0.218 3.782 24 F -0.178 7.178 25 F -0.178 7.178 26 H 0.091 0.909 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.147 -3.554 1.136 14.631 hybrid contribution -1.512 0.753 0.069 1.690 sum -15.659 -2.801 1.204 15.953 Atomic orbital electron populations 1.21676 0.90087 1.04016 1.03067 1.21906 1.00359 0.98210 0.92729 1.21913 1.02407 0.91844 1.04119 1.19605 0.80588 0.80007 0.86397 1.90696 1.54389 1.44179 1.51553 1.50198 1.04256 1.58227 1.24766 1.23267 0.86695 0.99861 0.90780 1.22600 0.96035 0.96235 0.95590 1.23417 0.79869 0.99156 0.98151 1.21136 0.98761 0.94607 0.97796 1.22026 0.97908 1.00369 0.97475 1.21254 0.94082 0.88266 0.94692 1.44308 1.41082 1.10973 1.35603 1.19976 0.97385 0.85901 1.45822 0.91857 1.26104 0.95191 1.02561 0.95901 1.70901 1.41183 1.17990 1.23277 0.84644 0.76931 0.77425 0.76542 1.22599 1.19497 1.22122 1.20841 0.86359 0.98786 0.90675 1.21873 0.98229 0.75292 0.82770 1.93008 1.90066 1.38053 1.96678 1.92981 1.91926 1.79946 1.52901 0.90900 0.91144 0.90940 0.90897 0.90314 0.90717 0.90095 0.89441 0.88863 0.90522 0.91666 0.92910 0.92508 0.92280 0.91650 0.95214 0.92300 0.95464 0.91927 0.86862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 7.55 37.16 0.28 -1.17 16 2 C -0.13 -1.49 0.50 -155.66 -0.08 -1.57 16 3 C -0.15 -1.40 7.96 37.16 0.30 -1.10 16 4 C 0.55 7.76 6.49 -10.99 -0.07 7.69 16 5 O -0.53 -9.29 16.71 5.56 0.09 -9.19 16 6 N -0.64 -8.39 3.36 -180.43 -0.61 -9.00 16 7 C 0.12 1.46 7.97 -3.17 -0.03 1.44 16 8 C -0.10 -1.42 0.87 -154.43 -0.13 -1.55 16 9 C 0.12 1.50 5.26 -3.17 -0.02 1.49 16 10 C -0.09 -1.20 5.02 -26.83 -0.13 -1.33 16 11 C -0.14 -2.18 5.99 -26.81 -0.16 -2.35 16 12 C 0.14 2.79 4.28 -3.99 -0.02 2.77 16 13 N -0.60 -12.52 2.71 -172.75 -0.47 -12.99 16 14 C -0.36 -9.17 9.72 -15.06 -0.15 -9.31 16 15 H 0.06 1.71 8.06 -52.48 -0.42 1.29 16 16 C 0.01 0.19 4.83 -17.43 -0.08 0.10 16 17 N -0.90 -25.92 13.70 55.49 0.76 -25.16 16 18 Si 1.02 23.82 26.97 -169.99 -4.59 19.23 16 19 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.27 -5.74 4.75 56.52 0.27 -5.47 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 22 C 0.16 2.71 5.71 -3.81 -0.02 2.69 16 23 C 0.27 3.26 4.22 37.16 0.16 3.42 16 24 F -0.20 -2.76 16.50 2.25 0.04 -2.72 16 25 F -0.20 -2.37 16.41 2.25 0.04 -2.33 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.67 7.84 -51.93 -0.41 0.26 16 28 H 0.07 0.90 7.64 -51.93 -0.40 0.50 16 29 H 0.07 0.70 5.89 -51.93 -0.31 0.40 16 30 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 33 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 34 H 0.09 1.20 7.72 -51.93 -0.40 0.80 16 35 H 0.08 0.98 5.28 -51.93 -0.27 0.70 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.72 8.02 -51.93 -0.42 0.31 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.96 7.37 -51.93 -0.38 0.58 16 40 H 0.07 1.41 5.72 -51.93 -0.30 1.12 16 41 H 0.03 0.58 6.69 -51.93 -0.35 0.23 16 42 H 0.27 7.63 8.73 -40.82 -0.36 7.27 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.06 7.78 -51.93 -0.40 0.65 16 45 H 0.11 1.26 5.63 -51.93 -0.29 0.97 16 LS Contribution 348.91 15.07 5.26 5.26 Total: -1.00 -29.90 348.91 -6.63 -36.53 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.00 Total: -0.83 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.16 Total: 1.20 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.31 Total: -47.15 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.07 Total: -5.06 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.59 Total: 19.23 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.90 -6.63 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982000423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.565 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds