Wall clock time and date at job start Tue Mar 31 2020 11:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00012 * 2 1 3 5 5 O 1.21282 * 120.00357 * 7.16972 * 4 2 1 6 6 N 1.34775 * 119.99702 * 187.16568 * 4 2 1 7 7 C 1.47678 * 134.45300 * 175.72737 * 6 4 2 8 8 C 1.53444 * 85.97469 * 155.71470 * 7 6 4 9 9 C 1.47669 * 134.45855 * 355.73589 * 6 4 2 10 10 C 1.52627 * 113.71618 * 268.85688 * 8 7 6 11 11 C 1.53180 * 109.35380 * 171.27220 * 10 8 7 12 12 C 1.52670 * 109.43026 * 58.92807 * 11 10 8 13 13 N 1.46900 * 109.34177 * 303.76674 * 12 11 10 14 14 C 1.36934 * 120.69292 * 235.30705 * 13 12 11 15 15 H 1.08003 * 120.00423 * 151.37325 * 14 13 12 16 16 C 1.38813 * 119.99854 * 331.38574 * 14 13 12 17 17 N 1.31625 * 120.00073 * 144.50745 * 16 14 13 18 18 Si 1.86797 * 120.00097 * 324.50150 * 16 14 13 19 19 H 1.48503 * 109.47182 * 270.00438 * 18 16 14 20 20 H 1.48504 * 109.46889 * 30.00179 * 18 16 14 21 21 H 1.48496 * 109.47465 * 150.00415 * 18 16 14 22 22 C 1.47116 * 118.61968 * 55.04226 * 13 12 11 23 23 C 1.52997 * 109.47028 * 239.99805 * 2 1 3 24 24 F 1.39902 * 109.47276 * 301.56986 * 23 2 1 25 25 F 1.39896 * 109.47340 * 61.56802 * 23 2 1 26 26 H 1.09005 * 109.46909 * 300.00139 * 1 2 3 27 27 H 1.09003 * 109.46800 * 59.99683 * 1 2 3 28 28 H 1.09000 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47115 * 185.85506 * 3 2 1 30 30 H 1.09006 * 109.46988 * 305.84984 * 3 2 1 31 31 H 1.08999 * 109.47553 * 65.85319 * 3 2 1 32 32 H 1.09000 * 113.79115 * 41.45601 * 7 6 4 33 33 H 1.09001 * 113.79454 * 269.98120 * 7 6 4 34 34 H 1.09005 * 113.79759 * 90.01571 * 9 6 4 35 35 H 1.09006 * 113.79039 * 318.54747 * 9 6 4 36 36 H 1.08997 * 109.48763 * 291.23229 * 10 8 7 37 37 H 1.08999 * 109.49320 * 51.30765 * 10 8 7 38 38 H 1.08999 * 109.49134 * 179.02178 * 11 10 8 39 39 H 1.09006 * 109.49352 * 299.07142 * 11 10 8 40 40 H 1.09004 * 109.44255 * 183.78706 * 12 11 10 41 41 H 1.08998 * 109.37195 * 63.70709 * 12 11 10 42 42 H 0.96994 * 119.99536 * 354.90075 * 17 16 14 43 43 H 1.09004 * 109.63868 * 68.57173 * 22 13 12 44 44 H 1.08993 * 109.63970 * 189.18989 * 22 13 12 45 45 H 1.08997 * 109.47268 * 181.57452 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2520 -1.2835 1.9609 6 7 3.3488 -0.7090 1.5192 7 6 4.1616 -1.2149 2.6436 8 6 5.3236 -1.2589 1.6424 9 6 4.5565 -0.2008 0.8380 10 6 5.4616 -2.5966 0.9207 11 6 6.4986 -2.4647 -0.1990 12 6 7.8385 -2.0401 0.3971 13 7 7.6615 -0.7928 1.1527 14 6 8.4224 0.3099 0.8695 15 1 8.0293 1.2989 1.0533 16 6 9.6988 0.1565 0.3461 17 7 10.1573 1.0208 -0.5344 18 14 10.7660 -1.2763 0.8914 19 1 11.5685 -0.8738 2.0744 20 1 9.9013 -2.4295 1.2491 21 1 11.6766 -1.6648 -0.2154 22 6 6.6456 -0.7512 2.2160 23 6 2.0400 -0.7213 -1.2492 24 9 1.5444 -2.0294 -1.2674 25 9 1.6034 -0.0414 -2.3912 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1250 1.4442 -0.1048 30 1 1.5937 1.9856 -0.8330 31 1 1.7649 1.9252 0.9377 32 1 3.8530 -2.1968 3.0024 33 1 4.3002 -0.4910 3.4467 34 1 4.8126 0.8248 1.1039 35 1 4.5616 -0.3770 -0.2377 36 1 5.7856 -3.3598 1.6282 37 1 4.4997 -2.8806 0.4939 38 1 6.6117 -3.4235 -0.7049 39 1 6.1671 -1.7126 -0.9151 40 1 8.5586 -1.8809 -0.4056 41 1 8.2014 -2.8220 1.0641 42 1 9.5783 1.7215 -0.8730 43 1 6.9550 -1.3897 3.0435 44 1 6.5235 0.2738 2.5660 45 1 3.1296 -0.7458 -1.2352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982000423.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:48 Heat of formation + Delta-G solvation = -101.508157 kcal Electronic energy + Delta-G solvation = -28888.708781 eV Core-core repulsion = 24770.876469 eV Total energy + Delta-G solvation = -4117.832312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.18825 -48.15109 -42.10595 -40.05163 -37.62368 -36.33658 -34.57910 -32.57248 -31.79396 -28.65417 -27.84318 -27.50167 -27.10377 -26.84936 -23.67750 -23.54431 -22.27507 -20.23975 -19.57965 -19.13228 -18.68933 -18.55325 -18.23414 -17.36819 -16.79704 -16.54608 -16.47623 -15.87027 -15.47349 -15.25866 -15.10467 -14.86458 -14.70351 -14.54308 -14.51955 -14.31210 -13.95351 -13.87688 -13.52118 -13.46549 -13.36709 -13.32208 -13.08704 -13.01882 -12.81593 -12.47294 -12.34432 -12.09801 -11.93158 -11.70033 -11.59030 -11.38815 -11.15353 -11.05970 -10.91200 -10.32333 -9.82430 -8.90480 -8.46708 -5.33795 1.26448 1.58614 1.60386 1.63117 1.80386 2.57345 2.67046 2.89464 2.98068 3.02649 3.24449 3.29329 3.59292 3.66628 3.75094 3.88389 3.92316 3.96066 4.22636 4.29221 4.35914 4.46277 4.50589 4.52917 4.58307 4.62181 4.63940 4.65561 4.72514 4.79535 4.90660 4.92616 5.02407 5.07264 5.09874 5.11166 5.19191 5.22315 5.35354 5.52647 5.95393 6.37490 6.52166 6.89111 6.99712 7.71999 8.23918 8.90562 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.020167 B = 0.004103 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.090291 B = 6822.562447 C = 7114.040693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.125 4.125 3 C -0.142 4.142 4 C 0.545 3.455 5 O -0.568 6.568 6 N -0.635 5.635 7 C 0.120 3.880 8 C -0.098 4.098 9 C 0.118 3.882 10 C -0.080 4.080 11 C -0.130 4.130 12 C 0.137 3.863 13 N -0.609 5.609 14 C -0.337 4.337 15 H 0.037 0.963 16 C -0.046 4.046 17 N -0.941 5.941 18 Si 1.054 2.946 19 H -0.302 1.302 20 H -0.235 1.235 21 H -0.306 1.306 22 C 0.160 3.840 23 C 0.271 3.729 24 F -0.210 7.210 25 F -0.196 7.196 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.039 0.961 42 H 0.254 0.746 43 H 0.040 0.960 44 H 0.059 0.941 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 -3.748 1.652 16.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.334 3.666 5 O -0.447 6.447 6 N -0.369 5.369 7 C -0.002 4.002 8 C -0.101 4.101 9 C -0.003 4.003 10 C -0.117 4.117 11 C -0.169 4.169 12 C 0.012 3.988 13 N -0.333 5.333 14 C -0.466 4.466 15 H 0.055 0.945 16 C -0.244 4.244 17 N -0.581 5.581 18 Si 0.881 3.119 19 H -0.231 1.231 20 H -0.159 1.159 21 H -0.234 1.234 22 C 0.034 3.966 23 C 0.217 3.783 24 F -0.191 7.191 25 F -0.177 7.177 26 H 0.093 0.907 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.078 0.922 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.415 -4.718 1.819 16.223 hybrid contribution -1.199 1.142 -0.104 1.659 sum -16.614 -3.576 1.716 17.081 Atomic orbital electron populations 1.21674 0.89752 1.03210 1.04025 1.21919 1.00663 0.98962 0.91354 1.21929 1.02412 0.90525 1.05053 1.19975 0.80424 0.79494 0.86718 1.90682 1.55223 1.45814 1.52952 1.50175 1.04100 1.57715 1.24906 1.23313 0.85464 1.00683 0.90700 1.22453 0.94778 0.96496 0.96336 1.23422 0.79459 0.99075 0.98362 1.21099 0.98498 0.94763 0.97358 1.21903 0.96068 1.01122 0.97835 1.21296 0.95777 0.87616 0.94084 1.44381 1.41265 1.10316 1.37322 1.19860 0.97226 0.86361 1.43140 0.94500 1.26977 0.96916 1.04235 0.96298 1.71002 1.41483 1.19522 1.26121 0.84134 0.75887 0.76406 0.75449 1.23060 1.15871 1.23386 1.20943 0.86450 0.99216 0.89948 1.22007 0.98705 0.74688 0.82858 1.92985 1.90279 1.39080 1.96746 1.92981 1.91982 1.79854 1.52876 0.90650 0.89471 0.92618 0.90903 0.88874 0.90226 0.89597 0.87946 0.88647 0.90091 0.90566 0.92083 0.90371 0.93039 0.94175 0.94364 0.93705 0.94253 0.92232 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 7.55 71.98 0.54 -2.12 16 2 C -0.12 -2.67 0.50 -52.93 -0.03 -2.70 16 3 C -0.14 -2.40 7.96 71.98 0.57 -1.83 16 4 C 0.54 14.47 6.49 87.66 0.57 15.04 16 5 O -0.57 -19.08 16.71 -3.04 -0.05 -19.13 16 6 N -0.64 -15.13 3.36 -843.14 -2.83 -17.96 16 7 C 0.12 2.67 7.97 86.30 0.69 3.36 16 8 C -0.10 -2.45 0.87 -52.04 -0.05 -2.50 16 9 C 0.12 2.79 5.26 86.30 0.45 3.25 16 10 C -0.08 -1.96 5.02 30.53 0.15 -1.81 16 11 C -0.13 -3.74 5.99 30.54 0.18 -3.55 16 12 C 0.14 5.05 4.28 86.19 0.37 5.42 16 13 N -0.61 -24.57 2.71 -700.45 -1.90 -26.47 16 14 C -0.34 -16.98 9.72 84.03 0.82 -16.17 16 15 H 0.04 2.03 8.06 -2.91 -0.02 2.01 16 16 C -0.05 -2.49 4.83 84.86 0.41 -2.08 16 17 N -0.94 -55.96 13.70 21.65 0.30 -55.67 16 18 Si 1.05 48.16 26.97 68.60 1.85 50.01 16 19 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 20 H -0.23 -9.26 4.75 99.48 0.47 -8.79 16 21 H -0.31 -14.52 7.11 99.48 0.71 -13.81 16 22 C 0.16 5.02 5.71 86.19 0.49 5.51 16 23 C 0.27 5.98 4.22 71.98 0.30 6.29 16 24 F -0.21 -5.57 16.50 44.97 0.74 -4.83 16 25 F -0.20 -4.33 16.41 44.97 0.74 -3.59 16 26 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.09 1.47 7.84 -2.39 -0.02 1.45 16 28 H 0.05 1.33 7.64 -2.39 -0.02 1.32 16 29 H 0.07 1.24 5.89 -2.39 -0.01 1.22 16 30 H 0.09 1.33 7.94 -2.38 -0.02 1.31 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.88 8.09 -2.39 -0.02 1.86 16 33 H 0.10 2.00 8.09 -2.39 -0.02 1.98 16 34 H 0.10 2.26 7.72 -2.38 -0.02 2.24 16 35 H 0.08 1.87 5.28 -2.38 -0.01 1.86 16 36 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.56 7.37 -2.38 -0.02 1.54 16 40 H 0.04 1.68 5.72 -2.38 -0.01 1.67 16 41 H 0.04 1.36 6.69 -2.39 -0.02 1.34 16 42 H 0.25 15.12 8.73 -92.71 -0.81 14.31 16 43 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.06 1.90 7.78 -2.39 -0.02 1.88 16 45 H 0.12 2.46 5.63 -2.39 -0.01 2.45 16 Total: -1.00 -64.92 348.91 5.04 -59.88 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.72 Total: 11.64 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.48 Total: 6.11 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.44 Total: -100.09 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.05 Total: -19.13 kcal Atomic # 9 Polarization: -9.90 SS G_CDS: 1.48 Total: -8.42 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 1.85 Total: 50.01 kcal Total: -64.92 5.04 -59.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982000423.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.630 kcal (2) G-P(sol) polarization free energy of solvation -64.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds