Wall clock time and date at job start Tue Mar 31 2020 11:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00184 * 2 1 4 4 H 1.48502 * 109.47165 * 86.25222 * 3 2 1 5 5 H 1.48503 * 109.47035 * 326.25176 * 3 2 1 6 6 H 1.48500 * 109.46988 * 206.25512 * 3 2 1 7 7 C 1.38814 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00463 * 23.09446 * 7 2 1 9 9 N 1.36939 * 119.99739 * 203.08199 * 7 2 1 10 10 C 1.43461 * 118.94337 * 204.70716 * 9 7 2 11 11 C 1.53804 * 107.95882 * 273.61479 * 10 9 7 12 12 C 1.47140 * 111.83906 * 281.66481 * 11 10 9 13 13 N 1.48215 * 110.34147 * 58.29732 * 12 11 10 14 14 C 1.34780 * 119.96735 * 102.51559 * 13 12 11 15 15 O 1.21281 * 119.99537 * 186.88638 * 14 13 12 16 16 C 1.50700 * 119.99947 * 6.88446 * 14 13 12 17 17 C 1.52994 * 109.47381 * 293.43032 * 16 14 13 18 18 C 1.53001 * 109.47156 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47030 * 60.00128 * 18 17 16 20 20 F 1.39897 * 109.47279 * 180.02562 * 19 18 17 21 21 F 1.39903 * 109.46781 * 60.00020 * 19 18 17 22 22 C 1.52998 * 109.47320 * 300.00154 * 19 18 17 23 23 C 1.53001 * 109.47195 * 59.99947 * 22 19 18 24 24 C 1.43618 * 120.05901 * 282.48763 * 13 12 11 25 25 C 1.48863 * 118.93923 * 24.43909 * 9 7 2 26 26 H 0.96997 * 120.00109 * 185.11834 * 1 2 3 27 27 H 1.08998 * 109.76490 * 33.22823 * 10 9 7 28 28 H 1.09000 * 109.76674 * 153.94804 * 10 9 7 29 29 H 1.09005 * 109.00469 * 42.27145 * 11 10 9 30 30 H 1.08999 * 109.00396 * 161.13669 * 11 10 9 31 31 H 1.08996 * 109.32320 * 178.56227 * 12 11 10 32 32 H 1.09000 * 109.32511 * 298.20309 * 12 11 10 33 33 H 1.08999 * 109.47142 * 53.43923 * 16 14 13 34 34 H 1.08999 * 109.47710 * 300.00543 * 17 16 14 35 35 H 1.09005 * 109.46998 * 60.00055 * 17 16 14 36 36 H 1.09000 * 109.46907 * 300.00075 * 18 17 16 37 37 H 1.09002 * 109.46978 * 180.02562 * 18 17 16 38 38 H 1.09006 * 109.47046 * 299.99827 * 22 19 18 39 39 H 1.09000 * 109.47171 * 179.97438 * 22 19 18 40 40 H 1.08998 * 109.46923 * 180.02562 * 23 22 19 41 41 H 1.08993 * 109.46897 * 59.99861 * 23 22 19 42 42 H 1.08998 * 108.87148 * 211.44598 * 24 13 12 43 43 H 1.08993 * 108.87933 * 329.88507 * 24 13 12 44 44 H 1.08996 * 109.47848 * 260.62705 * 25 9 7 45 45 H 1.09005 * 109.47552 * 20.65961 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4185 2.0922 1.3971 5 1 1.4896 2.6285 -0.7778 6 1 3.5852 1.4185 -0.6194 7 6 2.0102 -1.2022 0.0005 8 1 1.5351 -2.1002 -0.3659 9 7 3.2974 -1.2495 0.4655 10 6 4.1676 -2.2887 -0.0046 11 6 3.9579 -3.5231 0.8886 12 6 4.6562 -3.3915 2.1770 13 7 4.1855 -2.1846 2.8972 14 6 3.3156 -2.3070 3.9194 15 8 2.8339 -1.3167 4.4275 16 6 2.9415 -3.6743 4.4308 17 6 2.1557 -4.4244 3.3535 18 6 1.7754 -5.8124 3.8730 19 6 0.9112 -5.6682 5.1273 20 9 0.5639 -6.9373 5.6027 21 9 -0.2498 -4.9533 4.8140 22 6 1.6970 -4.9181 6.2047 23 6 2.0773 -3.5301 5.6851 24 6 4.6560 -0.8849 2.5072 25 6 3.7503 -0.2174 1.4379 26 1 -0.4850 -0.8367 0.0749 27 1 3.9226 -2.5353 -1.0376 28 1 5.2044 -1.9583 0.0595 29 1 2.8912 -3.6498 1.0742 30 1 4.3350 -4.4046 0.3701 31 1 4.4597 -4.2741 2.7855 32 1 5.7283 -3.3072 1.9993 33 1 3.8463 -4.2311 4.6746 34 1 1.2509 -3.8676 3.1097 35 1 2.7712 -4.5267 2.4597 36 1 2.6800 -6.3694 4.1170 37 1 1.2159 -6.3469 3.1053 38 1 2.6016 -5.4752 6.4487 39 1 1.0812 -4.8150 7.0981 40 1 2.6375 -2.9959 6.4525 41 1 1.1728 -2.9732 5.4411 42 1 4.6927 -0.2442 3.3882 43 1 5.6631 -0.9815 2.1017 44 1 4.3114 0.5554 0.9127 45 1 2.8830 0.2295 1.9239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982031528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:34 Heat of formation + Delta-G solvation = -110.213376 kcal Electronic energy + Delta-G solvation = -29337.922617 eV Core-core repulsion = 25219.712819 eV Total energy + Delta-G solvation = -4118.209798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.98842 -46.97147 -40.42324 -37.65743 -36.77980 -34.59116 -32.59162 -31.69091 -31.13706 -30.29052 -27.72071 -25.91722 -23.99804 -23.30806 -22.79417 -22.05118 -20.40689 -19.85173 -18.54380 -17.47208 -17.38136 -17.02129 -16.71868 -16.32163 -16.06598 -15.30483 -14.63696 -14.58309 -14.21866 -14.16453 -13.75759 -13.53557 -13.40158 -13.37887 -13.23374 -12.97329 -12.88187 -12.53101 -12.46504 -12.17937 -11.98764 -11.74667 -11.63486 -11.51518 -11.33691 -11.10148 -10.92494 -10.79386 -10.62047 -10.38809 -10.08240 -9.90024 -9.69787 -9.33034 -9.12324 -8.49195 -8.19650 -6.93435 -6.27010 -3.24718 2.92783 3.35848 3.48969 3.56606 3.67682 3.71326 3.97082 4.17982 4.25639 4.66497 4.70872 4.73913 4.83850 4.94012 4.96164 5.04212 5.10276 5.19391 5.39401 5.44989 5.46279 5.46486 5.55620 5.62073 5.63828 5.66646 5.81577 5.83751 5.90992 5.98530 6.06886 6.12149 6.16640 6.24264 6.30092 6.43800 6.61393 6.73106 6.81263 7.07235 7.74194 8.07067 8.50215 8.57486 9.07528 9.71705 10.18229 11.17951 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.016835 B = 0.004860 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.832301 B = 5759.457930 C = 6110.062488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.053 2.947 4 H -0.294 1.294 5 H -0.302 1.302 6 H -0.287 1.287 7 C -0.350 4.350 8 H 0.065 0.935 9 N -0.597 5.597 10 C 0.164 3.836 11 C -0.182 4.182 12 C 0.118 3.882 13 N -0.587 5.587 14 C 0.521 3.479 15 O -0.535 6.535 16 C -0.105 4.105 17 C -0.130 4.130 18 C -0.153 4.153 19 C 0.285 3.715 20 F -0.207 7.207 21 F -0.195 7.195 22 C -0.155 4.155 23 C -0.100 4.100 24 C 0.104 3.896 25 C 0.105 3.895 26 H 0.263 0.737 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.070 -12.904 9.621 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.210 4.210 3 Si 0.885 3.115 4 H -0.222 1.222 5 H -0.230 1.230 6 H -0.214 1.214 7 C -0.478 4.478 8 H 0.083 0.917 9 N -0.320 5.320 10 C 0.035 3.965 11 C -0.223 4.223 12 C -0.004 4.004 13 N -0.318 5.318 14 C 0.309 3.691 15 O -0.412 6.412 16 C -0.126 4.126 17 C -0.167 4.167 18 C -0.191 4.191 19 C 0.249 3.751 20 F -0.188 7.188 21 F -0.176 7.176 22 C -0.193 4.193 23 C -0.138 4.138 24 C -0.021 4.021 25 C -0.021 4.021 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.596 -10.744 9.809 17.998 hybrid contribution -0.020 -1.836 -0.012 1.836 sum 10.576 -12.580 9.797 19.133 Atomic orbital electron populations 1.70847 1.06456 1.29514 1.48638 1.26087 0.96358 1.00942 0.97570 0.84023 0.74646 0.76831 0.75996 1.22228 1.22984 1.21370 1.20139 0.88618 0.95925 1.43132 0.91698 1.43922 1.10636 1.30574 1.46842 1.20258 0.92922 0.87828 0.95449 1.22087 1.02342 1.01029 0.96818 1.20883 0.98418 0.87139 0.93993 1.47312 1.45407 1.07143 1.31984 1.20303 0.78253 0.90772 0.79820 1.90694 1.51482 1.39709 1.59281 1.21327 0.99856 0.94783 0.96679 1.21983 1.02543 0.93632 0.98550 1.22507 1.00570 0.99947 0.96091 1.21167 0.82486 0.75927 0.95511 1.92989 1.93410 1.42444 1.89925 1.93034 1.52250 1.78268 1.94030 1.22529 1.01272 0.97711 0.97786 1.21332 1.01382 0.94806 0.96294 1.21645 0.96997 0.84572 0.98927 1.22608 0.98018 0.91636 0.89858 0.92676 0.93074 0.94727 0.90361 0.92221 0.90558 0.91580 0.88802 0.89698 0.87988 0.88874 0.89150 0.88920 0.89283 0.89966 0.89686 0.90800 0.91850 0.94655 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -29.03 13.70 55.49 0.76 -28.27 16 2 C -0.01 -0.23 5.14 -17.43 -0.09 -0.32 16 3 Si 1.05 26.94 24.43 -169.99 -4.15 22.79 16 4 H -0.29 -7.34 6.73 56.52 0.38 -6.96 16 5 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 6 H -0.29 -6.85 6.45 56.52 0.36 -6.48 16 7 C -0.35 -9.67 9.55 -15.06 -0.14 -9.81 16 8 H 0.07 1.92 8.06 -52.49 -0.42 1.49 16 9 N -0.60 -13.71 2.33 -171.78 -0.40 -14.11 16 10 C 0.16 3.00 5.63 -5.23 -0.03 2.97 16 11 C -0.18 -2.69 4.98 -29.13 -0.15 -2.83 16 12 C 0.12 1.48 5.03 -5.91 -0.03 1.45 16 13 N -0.59 -9.50 2.46 -176.44 -0.43 -9.94 16 14 C 0.52 9.03 6.99 -10.98 -0.08 8.95 16 15 O -0.54 -11.56 15.60 5.56 0.09 -11.48 16 16 C -0.11 -1.34 1.70 -91.77 -0.16 -1.50 16 17 C -0.13 -1.68 4.41 -26.73 -0.12 -1.80 16 18 C -0.15 -1.60 5.45 -26.73 -0.15 -1.75 16 19 C 0.29 3.42 2.10 -26.73 -0.06 3.37 16 20 F -0.21 -2.58 17.06 2.25 0.04 -2.54 16 21 F -0.19 -2.98 16.02 2.25 0.04 -2.94 16 22 C -0.15 -1.56 5.45 -26.73 -0.15 -1.71 16 23 C -0.10 -1.26 4.40 -26.73 -0.12 -1.38 16 24 C 0.10 1.81 5.21 -4.40 -0.02 1.78 16 25 C 0.10 2.29 4.54 -1.56 -0.01 2.28 16 26 H 0.26 8.31 8.73 -40.82 -0.36 7.95 16 27 H 0.05 0.97 8.02 -51.93 -0.42 0.56 16 28 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 29 H 0.08 1.38 5.98 -51.93 -0.31 1.07 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.76 4.89 -51.93 -0.25 0.51 16 32 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 33 H 0.09 0.90 7.45 -51.93 -0.39 0.52 16 34 H 0.08 1.43 7.80 -51.93 -0.41 1.02 16 35 H 0.10 1.28 3.04 -51.93 -0.16 1.12 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 42 H 0.07 1.29 7.48 -51.93 -0.39 0.90 16 43 H 0.06 0.91 7.73 -51.93 -0.40 0.51 16 44 H 0.04 0.76 5.83 -51.93 -0.30 0.46 16 45 H 0.08 1.96 5.50 -51.93 -0.29 1.68 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -34.13 335.15 -6.99 -41.12 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.69 Total: 0.63 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -1.28 Total: -0.30 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.07 Total: -52.31 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.48 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.07 Total: -5.48 kcal Atomic # 14 Polarization: 26.94 SS G_CDS: -4.15 Total: 22.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.13 -6.99 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982031528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.098 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds