Wall clock time and date at job start Tue Mar 31 2020 11:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.77959 * 2 1 4 4 C 1.54319 * 110.72640 * 123.24159 * 2 1 3 5 5 N 1.47018 * 107.27539 * 140.55615 * 4 2 1 6 6 C 1.34778 * 125.65039 * 181.02861 * 5 4 2 7 7 O 1.21282 * 119.99912 * 184.97416 * 6 5 4 8 8 C 1.50699 * 119.99792 * 4.96557 * 6 5 4 9 9 H 1.09001 * 110.43275 * 23.51797 * 8 6 5 10 10 C 1.54886 * 110.48752 * 260.83060 * 8 6 5 11 11 C 1.54896 * 102.74671 * 203.38232 * 10 8 6 12 12 C 1.54261 * 104.19484 * 37.94345 * 11 10 8 13 13 F 1.39905 * 110.03226 * 95.67562 * 12 11 10 14 14 F 1.39902 * 110.02908 * 217.10334 * 12 11 10 15 15 C 1.53877 * 106.60213 * 336.38806 * 12 11 10 16 16 C 1.47429 * 108.69981 * 1.28697 * 5 4 2 17 17 C 1.55122 * 104.72396 * 335.55345 * 16 5 4 18 18 H 1.09002 * 110.94274 * 155.28869 * 17 16 5 19 19 N 1.46502 * 111.19535 * 279.19251 * 17 16 5 20 20 C 1.36936 * 120.00038 * 267.18753 * 19 17 16 21 21 H 1.08002 * 119.99823 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00131 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47310 * 90.00135 * 24 22 20 26 26 H 1.48506 * 109.47240 * 210.00138 * 24 22 20 27 27 H 1.48501 * 109.47413 * 330.00221 * 24 22 20 28 28 H 1.09006 * 109.46938 * 298.21239 * 1 2 3 29 29 H 1.08994 * 109.47292 * 58.21160 * 1 2 3 30 30 H 1.08997 * 109.47109 * 178.21705 * 1 2 3 31 31 H 1.09000 * 109.47436 * 181.78711 * 3 2 1 32 32 H 1.09004 * 109.47194 * 301.78703 * 3 2 1 33 33 H 1.08996 * 109.47218 * 61.79014 * 3 2 1 34 34 H 1.08999 * 109.87961 * 21.13781 * 4 2 1 35 35 H 1.09002 * 110.01376 * 260.04696 * 4 2 1 36 36 H 1.09000 * 110.75563 * 85.06868 * 10 8 6 37 37 H 1.08994 * 110.75822 * 321.69176 * 10 8 6 38 38 H 1.09001 * 110.48397 * 279.26668 * 11 10 8 39 39 H 1.08996 * 110.48668 * 156.62444 * 11 10 8 40 40 H 1.08997 * 110.03136 * 119.28428 * 15 12 11 41 41 H 1.08996 * 110.03153 * 240.71585 * 15 12 11 42 42 H 1.08996 * 110.36585 * 94.48453 * 16 5 4 43 43 H 1.09003 * 110.36557 * 216.80692 * 16 5 4 44 44 H 0.97002 * 119.99973 * 87.18602 * 19 17 16 45 45 H 0.97003 * 119.99760 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 1.2071 5 7 3.2446 -1.5507 0.7389 6 6 3.9924 -2.3836 1.4895 7 8 4.9902 -2.8903 1.0220 8 6 3.5889 -2.6851 2.9098 9 1 2.5204 -2.5174 3.0456 10 6 4.4066 -1.8202 3.9009 11 6 4.3358 -2.6431 5.2114 12 6 4.4338 -4.1096 4.7430 13 9 5.7587 -4.5514 4.8250 14 9 3.6083 -4.9200 5.5297 15 6 3.9589 -4.1364 3.2796 16 6 3.4666 -1.2454 -0.6863 17 6 2.0790 -0.7954 -1.2139 18 1 2.1842 -0.1518 -2.0873 19 7 1.2271 -1.9487 -1.5145 20 6 1.2020 -2.4699 -2.7806 21 1 1.8106 -2.0309 -3.5574 22 6 0.3953 -3.5630 -3.0653 23 7 -0.3460 -4.0983 -2.1186 24 14 0.3606 -4.2735 -4.7926 25 1 1.4024 -5.3244 -4.9166 26 1 -0.9749 -4.8667 -5.0571 27 1 0.6266 -3.1942 -5.7773 28 1 -0.3633 0.4858 0.9056 29 1 -0.3633 0.5413 -0.8735 30 1 -0.3633 -1.0271 -0.0320 31 1 3.1621 1.4059 -0.0320 32 1 1.6956 1.9623 -0.8736 33 1 1.7476 1.9426 0.9056 34 1 1.3131 -1.4758 1.5774 35 1 2.3737 -0.1044 1.9995 36 1 3.9436 -0.8424 4.0333 37 1 5.4382 -1.7181 3.5643 38 1 3.3884 -2.4679 5.7211 39 1 5.1728 -2.3942 5.8638 40 1 4.7606 -4.4935 2.6333 41 1 3.0852 -4.7808 3.1824 42 1 4.1946 -0.4413 -0.7931 43 1 3.8031 -2.1360 -1.2171 44 1 0.6808 -2.3432 -0.8167 45 1 -0.9100 -4.8619 -2.3177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995879331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:39 Heat of formation + Delta-G solvation = -134.967142 kcal Electronic energy + Delta-G solvation = -28059.458231 eV Core-core repulsion = 23940.175029 eV Total energy + Delta-G solvation = -4119.283202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.98895 -47.05902 -40.24543 -38.46613 -36.44483 -33.98817 -33.11502 -30.88486 -29.67711 -28.75195 -27.64470 -26.68119 -26.04236 -23.96210 -22.42996 -21.32493 -20.96257 -18.97509 -18.73983 -17.91445 -17.29997 -16.99104 -16.71530 -15.88344 -15.62645 -15.04484 -14.78446 -14.36500 -14.31397 -14.08506 -13.82656 -13.71145 -13.45789 -13.38603 -13.00328 -12.99422 -12.58147 -12.38435 -12.11169 -11.99529 -11.95884 -11.87172 -11.62436 -11.48050 -11.45687 -11.03371 -11.02482 -10.92573 -10.83589 -10.62132 -10.52437 -10.26188 -9.95405 -9.68692 -9.52912 -9.03621 -8.27306 -7.05141 -5.85380 -3.14554 2.76716 3.22079 3.40165 3.45801 3.46827 3.61866 3.85268 3.97632 4.24317 4.50989 4.70266 4.71582 4.77693 4.92864 4.99501 5.06620 5.07990 5.14914 5.22528 5.40927 5.43642 5.49216 5.56722 5.63614 5.67040 5.76773 5.80699 5.81298 5.88775 5.92753 5.98250 6.14381 6.19105 6.23304 6.29395 6.35551 6.54242 6.65692 6.77058 6.87354 7.63574 7.86187 8.32642 8.42853 9.44868 9.98729 10.33399 11.36852 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003984 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.847423 B = 7026.053639 C = 8105.248218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.111 3.889 5 N -0.599 5.599 6 C 0.535 3.465 7 O -0.544 6.544 8 C -0.108 4.108 9 H 0.103 0.897 10 C -0.106 4.106 11 C -0.158 4.158 12 C 0.283 3.717 13 F -0.197 7.197 14 F -0.200 7.200 15 C -0.154 4.154 16 C 0.078 3.922 17 C 0.178 3.822 18 H 0.074 0.926 19 N -0.707 5.707 20 C -0.245 4.245 21 H 0.072 0.928 22 C -0.007 4.007 23 N -0.930 5.930 24 Si 0.907 3.093 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.080 0.920 44 H 0.386 0.614 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.380 9.485 14.391 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.189 4.189 4 C -0.012 4.012 5 N -0.331 5.331 6 C 0.323 3.677 7 O -0.422 6.422 8 C -0.129 4.129 9 H 0.122 0.878 10 C -0.144 4.144 11 C -0.196 4.196 12 C 0.247 3.753 13 F -0.178 7.178 14 F -0.181 7.181 15 C -0.192 4.192 16 C -0.048 4.048 17 C 0.065 3.935 18 H 0.092 0.908 19 N -0.347 5.347 20 C -0.376 4.376 21 H 0.090 0.910 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.738 3.262 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.207 1.207 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.114 0.886 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.942 9.057 13.999 17.701 hybrid contribution -0.225 -0.869 -0.567 1.062 sum 5.717 8.187 13.433 16.738 Atomic orbital electron populations 1.21646 0.92767 1.03371 1.00651 1.21916 0.96754 0.94866 0.95565 1.21762 1.00710 0.94801 1.01669 1.22151 0.87877 0.94320 0.96867 1.48309 1.29230 1.43602 1.11957 1.19766 0.82898 0.78278 0.86766 1.90684 1.26101 1.51996 1.73395 1.22035 1.02223 0.95493 0.93198 0.87838 1.22420 1.01465 0.98308 0.92245 1.23354 1.05568 0.91283 0.99389 1.21763 0.73220 0.88711 0.91597 1.93024 1.36503 1.91140 1.97092 1.93014 1.72075 1.76111 1.76885 1.23129 1.05397 0.97594 0.93117 1.23383 1.00427 1.00763 0.80205 1.21425 0.88440 0.89669 0.93989 0.90786 1.42331 1.49442 1.32666 1.10271 1.19236 1.21107 1.09949 0.87344 0.91026 1.24722 0.99374 0.98603 0.97683 1.69648 1.30738 1.25624 1.31780 0.86202 0.76913 0.79081 0.84038 1.21669 1.21766 1.20671 0.93766 0.92225 0.90918 0.92705 0.92191 0.92816 0.91417 0.92069 0.89381 0.89696 0.88059 0.88614 0.86861 0.88127 0.92853 0.90152 0.77894 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.16 37.16 0.30 -1.51 16 2 C -0.09 -1.24 0.80 -152.67 -0.12 -1.36 16 3 C -0.13 -1.46 8.44 37.16 0.31 -1.15 16 4 C 0.11 1.47 5.36 -3.07 -0.02 1.46 16 5 N -0.60 -9.67 3.32 -170.39 -0.57 -10.23 16 6 C 0.54 8.90 6.90 -10.99 -0.08 8.82 16 7 O -0.54 -11.10 16.12 5.56 0.09 -11.01 16 8 C -0.11 -1.33 2.88 -90.11 -0.26 -1.59 16 9 H 0.10 1.12 6.94 -51.93 -0.36 0.76 16 10 C -0.11 -1.01 6.32 -24.74 -0.16 -1.17 16 11 C -0.16 -1.38 6.40 -25.07 -0.16 -1.54 16 12 C 0.28 3.37 2.57 -25.61 -0.07 3.31 16 13 F -0.20 -2.68 17.04 2.25 0.04 -2.64 16 14 F -0.20 -2.55 17.04 2.25 0.04 -2.52 16 15 C -0.15 -2.02 6.03 -25.61 -0.15 -2.17 16 16 C 0.08 1.38 6.28 -2.41 -0.02 1.37 16 17 C 0.18 3.19 2.96 -65.66 -0.19 2.99 16 18 H 0.07 1.33 7.99 -51.93 -0.41 0.91 16 19 N -0.71 -16.27 4.57 -51.24 -0.23 -16.50 16 20 C -0.25 -6.46 9.96 -15.06 -0.15 -6.61 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.93 -27.06 13.06 55.49 0.72 -26.33 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.26 6.34 -51.93 -0.33 0.93 16 31 H 0.05 0.60 7.42 -51.93 -0.39 0.22 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.92 7.33 -51.93 -0.38 0.54 16 35 H 0.06 0.64 7.85 -51.93 -0.41 0.24 16 36 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 38 H 0.10 0.72 8.12 -51.93 -0.42 0.30 16 39 H 0.10 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.11 1.73 6.81 -51.93 -0.35 1.38 16 41 H 0.10 1.27 8.02 -51.93 -0.42 0.86 16 42 H 0.05 0.85 7.69 -51.93 -0.40 0.45 16 43 H 0.08 1.73 8.08 -51.93 -0.42 1.31 16 44 H 0.39 9.46 6.32 -40.82 -0.26 9.20 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -31.23 362.53 -7.37 -38.60 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -7.05 Total: 7.71 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -0.85 Total: 0.54 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.08 Total: -53.07 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.09 Total: -11.01 kcal Atomic # 9 Polarization: -5.24 SS G_CDS: 0.08 Total: -5.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.23 -7.37 -38.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995879331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.370 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds