Wall clock time and date at job start Tue Mar 31 2020 11:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 110.77959 * 2 1 4 4 C 1.54319 * 110.72640 * 123.24159 * 2 1 3 5 5 N 1.47018 * 107.27539 * 140.55615 * 4 2 1 6 6 C 1.34778 * 125.65039 * 181.02861 * 5 4 2 7 7 O 1.21282 * 119.99912 * 184.97416 * 6 5 4 8 8 C 1.50699 * 119.99792 * 4.96557 * 6 5 4 9 9 H 1.09001 * 110.43275 * 23.51797 * 8 6 5 10 10 C 1.54886 * 110.48752 * 260.83060 * 8 6 5 11 11 C 1.54896 * 102.74671 * 203.38232 * 10 8 6 12 12 C 1.54261 * 104.19484 * 37.94345 * 11 10 8 13 13 F 1.39905 * 110.03226 * 95.67562 * 12 11 10 14 14 F 1.39902 * 110.02908 * 217.10334 * 12 11 10 15 15 C 1.53877 * 106.60213 * 336.38806 * 12 11 10 16 16 C 1.47429 * 108.69981 * 1.28697 * 5 4 2 17 17 C 1.55122 * 104.72396 * 335.55345 * 16 5 4 18 18 H 1.09002 * 110.94274 * 155.28869 * 17 16 5 19 19 N 1.46502 * 111.19535 * 279.19251 * 17 16 5 20 20 C 1.36936 * 120.00038 * 267.18753 * 19 17 16 21 21 H 1.08002 * 119.99823 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00131 * 179.97438 * 20 19 17 23 23 N 1.31619 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47310 * 90.00135 * 24 22 20 26 26 H 1.48506 * 109.47240 * 210.00138 * 24 22 20 27 27 H 1.48501 * 109.47413 * 330.00221 * 24 22 20 28 28 H 1.09006 * 109.46938 * 298.21239 * 1 2 3 29 29 H 1.08994 * 109.47292 * 58.21160 * 1 2 3 30 30 H 1.08997 * 109.47109 * 178.21705 * 1 2 3 31 31 H 1.09000 * 109.47436 * 181.78711 * 3 2 1 32 32 H 1.09004 * 109.47194 * 301.78703 * 3 2 1 33 33 H 1.08996 * 109.47218 * 61.79014 * 3 2 1 34 34 H 1.08999 * 109.87961 * 21.13781 * 4 2 1 35 35 H 1.09002 * 110.01376 * 260.04696 * 4 2 1 36 36 H 1.09000 * 110.75563 * 85.06868 * 10 8 6 37 37 H 1.08994 * 110.75822 * 321.69176 * 10 8 6 38 38 H 1.09001 * 110.48397 * 279.26668 * 11 10 8 39 39 H 1.08996 * 110.48668 * 156.62444 * 11 10 8 40 40 H 1.08997 * 110.03136 * 119.28428 * 15 12 11 41 41 H 1.08996 * 110.03153 * 240.71585 * 15 12 11 42 42 H 1.08996 * 110.36585 * 94.48453 * 16 5 4 43 43 H 1.09003 * 110.36557 * 216.80692 * 16 5 4 44 44 H 0.97002 * 119.99973 * 87.18602 * 19 17 16 45 45 H 0.97003 * 119.99760 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4305 0.0000 4 6 2.0761 -0.7912 1.2071 5 7 3.2446 -1.5507 0.7389 6 6 3.9924 -2.3836 1.4895 7 8 4.9902 -2.8903 1.0220 8 6 3.5889 -2.6851 2.9098 9 1 2.5204 -2.5174 3.0456 10 6 4.4066 -1.8202 3.9009 11 6 4.3358 -2.6431 5.2114 12 6 4.4338 -4.1096 4.7430 13 9 5.7587 -4.5514 4.8250 14 9 3.6083 -4.9200 5.5297 15 6 3.9589 -4.1364 3.2796 16 6 3.4666 -1.2454 -0.6863 17 6 2.0790 -0.7954 -1.2139 18 1 2.1842 -0.1518 -2.0873 19 7 1.2271 -1.9487 -1.5145 20 6 1.2020 -2.4699 -2.7806 21 1 1.8106 -2.0309 -3.5574 22 6 0.3953 -3.5630 -3.0653 23 7 -0.3460 -4.0983 -2.1186 24 14 0.3606 -4.2735 -4.7926 25 1 1.4024 -5.3244 -4.9166 26 1 -0.9749 -4.8667 -5.0571 27 1 0.6266 -3.1942 -5.7773 28 1 -0.3633 0.4858 0.9056 29 1 -0.3633 0.5413 -0.8735 30 1 -0.3633 -1.0271 -0.0320 31 1 3.1621 1.4059 -0.0320 32 1 1.6956 1.9623 -0.8736 33 1 1.7476 1.9426 0.9056 34 1 1.3131 -1.4758 1.5774 35 1 2.3737 -0.1044 1.9995 36 1 3.9436 -0.8424 4.0333 37 1 5.4382 -1.7181 3.5643 38 1 3.3884 -2.4679 5.7211 39 1 5.1728 -2.3942 5.8638 40 1 4.7606 -4.4935 2.6333 41 1 3.0852 -4.7808 3.1824 42 1 4.1946 -0.4413 -0.7931 43 1 3.8031 -2.1360 -1.2171 44 1 0.6808 -2.3432 -0.8167 45 1 -0.9100 -4.8619 -2.3177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995879331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:38 Heat of formation + Delta-G solvation = -154.026210 kcal Electronic energy + Delta-G solvation = -28060.284694 eV Core-core repulsion = 23940.175029 eV Total energy + Delta-G solvation = -4120.109665 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.97299 -48.05732 -41.50881 -39.70235 -37.51156 -35.77331 -34.44985 -32.65350 -30.73249 -29.91963 -28.73503 -27.90056 -27.18455 -25.73966 -23.72630 -22.31914 -22.07057 -20.22428 -20.05461 -19.10326 -18.88577 -18.14433 -17.75160 -17.21868 -16.75908 -16.43423 -16.22335 -15.80241 -15.38555 -15.28646 -15.18988 -14.85133 -14.52955 -14.46921 -14.38329 -14.20911 -13.82343 -13.61971 -13.26814 -13.19056 -13.00106 -12.88752 -12.80963 -12.73952 -12.71642 -12.60850 -12.41752 -12.17737 -12.05241 -11.94789 -11.82144 -11.69890 -11.43285 -11.26783 -10.96155 -10.83476 -9.64456 -8.96455 -7.96438 -5.22845 1.44705 1.46720 1.50842 1.53750 2.00959 2.53937 2.73043 2.91728 3.06350 3.30185 3.36921 3.51896 3.68240 3.85044 3.89696 3.97973 4.04374 4.13042 4.14657 4.24368 4.36334 4.40441 4.52389 4.62877 4.65965 4.69618 4.82099 4.83594 4.91038 4.93200 4.95558 4.97582 5.01754 5.09708 5.18591 5.19639 5.35713 5.39874 5.48120 5.52023 5.68683 6.26263 6.59963 7.13476 7.34014 8.09300 8.31925 9.26544 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.003984 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.847423 B = 7026.053639 C = 8105.248218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.077 4.077 3 C -0.126 4.126 4 C 0.108 3.892 5 N -0.601 5.601 6 C 0.526 3.474 7 O -0.594 6.594 8 C -0.101 4.101 9 H 0.126 0.874 10 C -0.098 4.098 11 C -0.144 4.144 12 C 0.277 3.723 13 F -0.211 7.211 14 F -0.205 7.205 15 C -0.160 4.160 16 C 0.084 3.916 17 C 0.167 3.833 18 H 0.074 0.926 19 N -0.717 5.717 20 C -0.239 4.239 21 H 0.074 0.926 22 C -0.069 4.069 23 N -0.965 5.965 24 Si 0.963 3.037 25 H -0.297 1.297 26 H -0.295 1.295 27 H -0.267 1.267 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.031 0.969 44 H 0.377 0.623 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 12.475 16.455 21.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.079 4.079 3 C -0.183 4.183 4 C -0.014 4.014 5 N -0.332 5.332 6 C 0.315 3.685 7 O -0.476 6.476 8 C -0.122 4.122 9 H 0.144 0.856 10 C -0.136 4.136 11 C -0.182 4.182 12 C 0.241 3.759 13 F -0.192 7.192 14 F -0.186 7.186 15 C -0.198 4.198 16 C -0.042 4.042 17 C 0.056 3.944 18 H 0.092 0.908 19 N -0.356 5.356 20 C -0.371 4.371 21 H 0.092 0.908 22 C -0.261 4.261 23 N -0.616 5.616 24 Si 0.793 3.207 25 H -0.225 1.225 26 H -0.222 1.222 27 H -0.192 1.192 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.143 0.857 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.131 0.869 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.094 0.906 43 H 0.050 0.950 44 H 0.210 0.790 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.702 12.111 16.069 20.914 hybrid contribution -0.088 -1.785 -1.245 2.178 sum 5.614 10.326 14.824 18.918 Atomic orbital electron populations 1.21572 0.92967 1.01260 1.02054 1.21877 0.96491 0.96272 0.93243 1.21739 1.00781 0.92413 1.03371 1.22406 0.86721 0.94680 0.97568 1.48432 1.29888 1.43819 1.11060 1.20588 0.82173 0.77363 0.88335 1.90658 1.28432 1.53687 1.74788 1.22083 1.03925 0.95371 0.90794 0.85579 1.22469 1.00377 0.99496 0.91250 1.23392 1.07827 0.87747 0.99224 1.22051 0.72344 0.90734 0.90743 1.92996 1.37560 1.91540 1.97086 1.93001 1.72170 1.76646 1.76805 1.23112 1.04263 0.98473 0.93981 1.23116 1.00517 0.99220 0.81319 1.21678 0.88018 0.88552 0.96140 0.90838 1.42435 1.50160 1.34055 1.08924 1.19605 1.19515 1.09260 0.88749 0.90804 1.25406 1.00182 0.99701 1.00834 1.69783 1.32140 1.26263 1.33365 0.85286 0.76181 0.78349 0.80838 1.22458 1.22161 1.19180 0.90162 0.93142 0.94560 0.92389 0.92075 0.89734 0.91591 0.87461 0.85704 0.91189 0.85347 0.86858 0.89967 0.88397 0.90571 0.95013 0.78964 0.94171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 8.16 71.98 0.59 -2.61 16 2 C -0.08 -1.94 0.80 -50.99 -0.04 -1.98 16 3 C -0.13 -2.24 8.44 71.98 0.61 -1.63 16 4 C 0.11 2.51 5.36 86.73 0.46 2.97 16 5 N -0.60 -18.73 3.32 -811.38 -2.70 -21.43 16 6 C 0.53 17.36 6.90 87.66 0.61 17.96 16 7 O -0.59 -25.26 16.12 -3.04 -0.05 -25.31 16 8 C -0.10 -2.30 2.88 -10.47 -0.03 -2.33 16 9 H 0.13 2.33 6.94 -2.39 -0.02 2.32 16 10 C -0.10 -1.52 6.32 31.89 0.20 -1.32 16 11 C -0.14 -1.98 6.40 31.67 0.20 -1.78 16 12 C 0.28 6.27 2.57 31.32 0.08 6.35 16 13 F -0.21 -5.71 17.04 44.97 0.77 -4.94 16 14 F -0.21 -4.97 17.04 44.97 0.77 -4.21 16 15 C -0.16 -4.21 6.03 31.32 0.19 -4.02 16 16 C 0.08 3.01 6.28 86.93 0.55 3.56 16 17 C 0.17 5.92 2.96 46.46 0.14 6.06 16 18 H 0.07 2.60 7.99 -2.39 -0.02 2.58 16 19 N -0.72 -33.67 4.57 -316.01 -1.44 -35.11 16 20 C -0.24 -12.88 9.96 84.03 0.84 -12.04 16 21 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 22 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 23 N -0.96 -57.91 13.06 21.65 0.28 -57.63 16 24 Si 0.96 46.18 29.55 68.60 2.03 48.21 16 25 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 26 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 27 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 28 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.23 6.34 -2.39 -0.02 1.22 16 31 H 0.06 1.02 7.42 -2.39 -0.02 1.01 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.60 7.33 -2.39 -0.02 1.58 16 35 H 0.11 1.59 7.85 -2.39 -0.02 1.57 16 36 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 38 H 0.13 1.14 8.12 -2.39 -0.02 1.13 16 39 H 0.11 1.24 8.11 -2.39 -0.02 1.23 16 40 H 0.08 2.69 6.81 -2.39 -0.02 2.68 16 41 H 0.10 2.54 8.02 -2.39 -0.02 2.52 16 42 H 0.08 2.35 7.69 -2.39 -0.02 2.34 16 43 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 44 H 0.38 19.00 6.32 -92.71 -0.59 18.41 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.97 362.53 4.91 -68.06 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.41 Total: 26.59 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 4.85 Total: 5.77 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -3.86 Total: -114.17 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 9 Polarization: -10.68 SS G_CDS: 1.53 Total: -9.15 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -72.97 4.91 -68.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995879331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.968 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds