Wall clock time and date at job start Tue Mar 31 2020 11:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 110.91605 * 2 1 4 4 C 1.55393 * 111.19056 * 235.94123 * 2 1 3 5 5 N 1.47423 * 104.87277 * 204.97952 * 4 2 1 6 6 C 1.34770 * 125.64882 * 204.16790 * 5 4 2 7 7 O 1.21291 * 120.00159 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00419 * 179.97438 * 6 5 4 9 9 H 1.09004 * 110.42805 * 302.53860 * 8 6 5 10 10 C 1.54269 * 110.48883 * 180.02562 * 8 6 5 11 11 C 1.53873 * 106.59333 * 217.70974 * 10 8 6 12 12 C 1.54263 * 106.60477 * 359.97438 * 11 10 8 13 13 F 1.39898 * 110.48651 * 142.28815 * 12 11 10 14 14 F 1.39899 * 110.48753 * 264.80216 * 12 11 10 15 15 C 1.54887 * 110.48737 * 65.22012 * 8 6 5 16 16 C 1.47029 * 108.70400 * 24.13323 * 5 4 2 17 17 C 1.54322 * 107.26874 * 358.94223 * 16 5 4 18 18 H 1.09002 * 110.71628 * 219.26929 * 17 16 5 19 19 N 1.46494 * 110.72290 * 96.17313 * 17 16 5 20 20 C 1.36931 * 120.00458 * 88.83842 * 19 17 16 21 21 H 1.08002 * 120.00103 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31624 * 119.99535 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 179.97438 * 22 20 19 25 25 H 1.48490 * 109.47339 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.47239 * 300.00542 * 24 22 20 27 27 H 1.48504 * 109.46636 * 60.00101 * 24 22 20 28 28 H 1.08997 * 109.47126 * 296.09722 * 1 2 3 29 29 H 1.09003 * 109.46958 * 56.10158 * 1 2 3 30 30 H 1.09006 * 109.47263 * 176.09396 * 1 2 3 31 31 H 1.09004 * 109.47319 * 183.89695 * 3 2 1 32 32 H 1.08997 * 109.46917 * 303.90213 * 3 2 1 33 33 H 1.08999 * 109.46890 * 63.90084 * 3 2 1 34 34 H 1.08998 * 110.34136 * 86.12796 * 4 2 1 35 35 H 1.08997 * 110.44203 * 323.88313 * 4 2 1 36 36 H 1.08994 * 110.02887 * 336.98849 * 10 8 6 37 37 H 1.09001 * 110.03236 * 98.42279 * 10 8 6 38 38 H 1.09002 * 110.03284 * 119.28676 * 11 10 8 39 39 H 1.09002 * 110.03058 * 240.66133 * 11 10 8 40 40 H 1.08997 * 110.76025 * 274.94123 * 15 8 6 41 41 H 1.08996 * 110.75341 * 38.30974 * 15 8 6 42 42 H 1.08996 * 109.87673 * 239.51969 * 16 5 4 43 43 H 1.08999 * 110.00727 * 118.42916 * 16 5 4 44 44 H 0.97000 * 119.99459 * 268.83640 * 19 17 16 45 45 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0917 -0.8114 -1.2003 5 7 3.4327 -1.2460 -0.7689 6 6 4.4560 -1.5641 -1.5861 7 8 4.3127 -1.5045 -2.7890 8 6 5.7786 -1.9940 -1.0054 9 1 6.1716 -1.2231 -0.3425 10 6 6.7875 -2.3033 -2.1308 11 6 7.6080 -3.5183 -1.6637 12 6 7.0697 -3.9046 -0.2706 13 9 7.0507 -5.2954 -0.1214 14 9 7.8448 -3.3160 0.7343 15 6 5.6279 -3.3376 -0.2498 16 6 3.4691 -1.2742 0.7007 17 6 2.0861 -0.8080 1.2022 18 1 2.1891 -0.1707 2.0805 19 7 1.2268 -1.9574 1.4962 20 6 1.2429 -2.5233 2.7430 21 1 1.8888 -2.1219 3.5099 22 6 0.4283 -3.6121 3.0218 23 7 -0.3593 -4.1010 2.0873 24 14 0.4508 -4.3845 4.7224 25 1 -0.5012 -5.5234 4.7615 26 1 1.8197 -4.8735 5.0259 27 1 0.0523 -3.3706 5.7317 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3634 -1.0253 -0.0700 31 1 3.1637 1.4026 -0.0698 32 1 1.6705 1.9731 -0.8529 33 1 1.7836 1.9299 0.9229 34 1 2.1643 -0.1785 -2.0847 35 1 1.4601 -1.6760 -1.4043 36 1 6.2569 -2.5430 -3.0523 37 1 7.4441 -1.4478 -2.2891 38 1 7.4758 -4.3476 -2.3586 39 1 8.6630 -3.2527 -1.5963 40 1 5.2934 -3.1697 0.7739 41 1 4.9435 -4.0024 -0.7767 42 1 4.2428 -0.5985 1.0653 43 1 3.6676 -2.2876 1.0495 44 1 0.6464 -2.3177 0.8076 45 1 -0.9283 -4.8621 2.2819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995879355.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:43 Heat of formation + Delta-G solvation = -133.868454 kcal Electronic energy + Delta-G solvation = -28317.684032 eV Core-core repulsion = 24198.448472 eV Total energy + Delta-G solvation = -4119.235560 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.92023 -47.04628 -40.30285 -38.41804 -36.46108 -34.01823 -33.25500 -30.81554 -29.70935 -28.27981 -27.99421 -26.75342 -26.03922 -23.93078 -22.28178 -21.25349 -21.10838 -19.07799 -18.70275 -17.76707 -17.27428 -16.80545 -16.65135 -16.08220 -15.57593 -15.03371 -14.97431 -14.61215 -14.19949 -14.12195 -13.90715 -13.57317 -13.40516 -13.37599 -12.98151 -12.76444 -12.53591 -12.43309 -12.21680 -12.11281 -11.87099 -11.79654 -11.72861 -11.53082 -11.28175 -11.03938 -10.93277 -10.84027 -10.82067 -10.60995 -10.44340 -10.30373 -9.90656 -9.73158 -9.61758 -9.03616 -8.30714 -7.11432 -5.87945 -3.18318 2.72754 3.17101 3.37755 3.43049 3.43973 3.62966 3.73835 4.07035 4.27944 4.48508 4.63227 4.79619 4.95058 5.00139 5.04695 5.06597 5.10414 5.20054 5.24381 5.40468 5.48883 5.56364 5.60748 5.65740 5.72059 5.81726 5.85517 5.87278 5.92111 6.04058 6.08364 6.14516 6.18521 6.24047 6.31027 6.36037 6.52473 6.59585 6.72391 6.87812 7.59437 7.80499 8.29424 8.32934 9.41891 9.95869 10.30652 11.33877 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.010495 B = 0.005163 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2667.395746 B = 5421.724234 C = 7372.420728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 C -0.129 4.129 4 C 0.120 3.880 5 N -0.600 5.600 6 C 0.535 3.465 7 O -0.551 6.551 8 C -0.107 4.107 9 H 0.107 0.893 10 C -0.108 4.108 11 C -0.159 4.159 12 C 0.280 3.720 13 F -0.196 7.196 14 F -0.194 7.194 15 C -0.149 4.149 16 C 0.066 3.934 17 C 0.178 3.822 18 H 0.071 0.929 19 N -0.711 5.711 20 C -0.249 4.249 21 H 0.071 0.929 22 C -0.006 4.006 23 N -0.929 5.929 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.080 0.920 44 H 0.387 0.613 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.108 7.017 -6.585 15.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.091 4.091 3 C -0.187 4.187 4 C -0.003 4.003 5 N -0.332 5.332 6 C 0.323 3.677 7 O -0.430 6.430 8 C -0.129 4.129 9 H 0.125 0.875 10 C -0.146 4.146 11 C -0.198 4.198 12 C 0.244 3.756 13 F -0.177 7.177 14 F -0.175 7.175 15 C -0.188 4.188 16 C -0.060 4.060 17 C 0.066 3.934 18 H 0.089 0.911 19 N -0.352 5.352 20 C -0.380 4.380 21 H 0.089 0.911 22 C -0.203 4.203 23 N -0.576 5.576 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.212 1.212 27 H -0.212 1.212 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.222 0.778 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.095 6.919 -7.042 15.613 hybrid contribution -0.030 -0.820 1.043 1.327 sum 12.065 6.098 -5.999 14.790 Atomic orbital electron populations 1.21561 0.92708 1.02907 1.01018 1.22110 0.96614 0.94734 0.95643 1.21677 1.00525 0.94873 1.01608 1.22366 0.82788 0.98130 0.96971 1.48369 1.11838 1.65135 1.07858 1.19807 0.84553 0.77284 0.86090 1.90662 1.83217 1.54589 1.14512 1.22000 0.94253 0.98075 0.98523 0.87494 1.22043 0.96392 0.97045 0.99087 1.23149 1.01822 1.00873 0.93915 1.21893 0.92179 0.74468 0.87085 1.93015 1.97178 1.30953 1.96521 1.93008 1.77052 1.83654 1.63799 1.23483 0.94184 0.96724 1.04370 1.23421 1.01742 1.02259 0.78558 1.21219 0.88119 0.89666 0.94401 0.91073 1.42430 1.47275 1.32876 1.12583 1.19164 1.19905 1.09877 0.89015 0.91078 1.24735 0.99022 0.98784 0.97725 1.69645 1.28610 1.26826 1.32487 0.86296 0.77310 0.78757 0.83964 1.21685 1.21190 1.21174 0.92069 0.93675 0.91189 0.92929 0.92827 0.92297 0.91214 0.91213 0.88511 0.90294 0.88384 0.89028 0.87601 0.87602 0.92685 0.90181 0.77755 0.93288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.90 8.23 37.16 0.31 -1.59 16 2 C -0.09 -1.33 0.84 -152.10 -0.13 -1.45 16 3 C -0.13 -1.60 8.58 37.16 0.32 -1.28 16 4 C 0.12 1.89 5.83 -2.27 -0.01 1.88 16 5 N -0.60 -9.38 3.32 -170.21 -0.56 -9.94 16 6 C 0.53 8.27 7.19 -10.99 -0.08 8.19 16 7 O -0.55 -9.98 15.68 5.55 0.09 -9.89 16 8 C -0.11 -1.31 2.67 -90.11 -0.24 -1.55 16 9 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 10 C -0.11 -1.14 6.19 -25.61 -0.16 -1.30 16 11 C -0.16 -1.55 6.41 -25.62 -0.16 -1.71 16 12 C 0.28 3.44 2.49 -25.05 -0.06 3.38 16 13 F -0.20 -2.75 17.16 2.25 0.04 -2.71 16 14 F -0.19 -2.55 17.17 2.25 0.04 -2.51 16 15 C -0.15 -1.93 5.16 -24.71 -0.13 -2.05 16 16 C 0.07 1.04 5.49 -3.06 -0.02 1.02 16 17 C 0.18 3.10 2.86 -66.10 -0.19 2.91 16 18 H 0.07 1.23 8.01 -51.93 -0.42 0.82 16 19 N -0.71 -15.83 4.56 -51.66 -0.24 -16.06 16 20 C -0.25 -6.29 9.97 -15.06 -0.15 -6.44 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 23 N -0.93 -26.52 13.06 55.49 0.72 -25.79 16 24 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.24 6.44 -51.93 -0.33 0.91 16 31 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.07 7.95 -51.93 -0.41 0.66 16 35 H 0.07 1.22 8.00 -51.93 -0.42 0.80 16 36 H 0.10 1.16 6.85 -51.93 -0.36 0.80 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 40 H 0.11 1.42 6.37 -51.93 -0.33 1.09 16 41 H 0.11 1.46 8.05 -51.93 -0.42 1.04 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.40 6.06 -51.93 -0.31 1.09 16 44 H 0.39 9.33 6.21 -40.82 -0.25 9.08 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -29.16 360.45 -7.31 -36.48 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.01 Total: 8.89 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -0.80 Total: -0.25 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.08 Total: -51.79 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 9 Polarization: -5.30 SS G_CDS: 0.08 Total: -5.22 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.16 -7.31 -36.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995879355.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.391 kcal (2) G-P(sol) polarization free energy of solvation -29.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds