Wall clock time and date at job start Tue Mar 31 2020 11:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 110.30168 * 2 1 4 4 C 1.54388 * 110.34030 * 237.83061 * 2 1 3 5 5 N 1.48312 * 104.53367 * 217.33168 * 4 2 1 6 6 C 1.34778 * 127.77278 * 219.51755 * 5 4 2 7 7 O 1.21281 * 119.99550 * 359.95510 * 6 5 4 8 8 C 1.50699 * 120.00268 * 179.97438 * 6 5 4 9 9 H 1.09002 * 110.01370 * 58.60778 * 8 6 5 10 10 C 1.53876 * 110.03192 * 179.97438 * 8 6 5 11 11 C 1.54267 * 106.59602 * 119.28545 * 10 8 6 12 12 C 1.54893 * 104.19917 * 23.60995 * 11 10 8 13 13 F 1.39902 * 110.75464 * 80.37058 * 12 11 10 14 14 F 1.39895 * 110.75857 * 203.74214 * 12 11 10 15 15 C 1.54268 * 110.03260 * 297.16418 * 8 6 5 16 16 C 1.48147 * 104.39569 * 39.46344 * 5 4 2 17 17 C 1.54283 * 110.34527 * 122.17868 * 2 1 3 18 18 H 1.09003 * 110.34282 * 237.74480 * 17 2 1 19 19 N 1.46500 * 110.33978 * 359.97438 * 17 2 1 20 20 C 1.36936 * 120.00148 * 204.99798 * 19 17 2 21 21 H 1.08002 * 119.99798 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00608 * 179.97438 * 20 19 17 23 23 N 1.31627 * 119.99551 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00375 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47100 * 60.00245 * 24 22 20 26 26 H 1.48495 * 109.47004 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.46933 * 300.00306 * 24 22 20 28 28 H 1.08996 * 109.47351 * 59.29954 * 1 2 3 29 29 H 1.08999 * 109.46680 * 179.29653 * 1 2 3 30 30 H 1.08998 * 109.47007 * 299.29513 * 1 2 3 31 31 H 1.09004 * 109.46723 * 60.70627 * 3 2 1 32 32 H 1.08999 * 109.46937 * 180.70078 * 3 2 1 33 33 H 1.08997 * 109.47162 * 300.70280 * 3 2 1 34 34 H 1.08993 * 110.41105 * 336.03912 * 4 2 1 35 35 H 1.08999 * 110.41186 * 98.47662 * 4 2 1 36 36 H 1.09001 * 110.03598 * 238.56807 * 10 8 6 37 37 H 1.08999 * 110.03235 * 0.02562 * 10 8 6 38 38 H 1.08999 * 110.48756 * 142.28881 * 11 10 8 39 39 H 1.09002 * 110.48641 * 264.93381 * 11 10 8 40 40 H 1.08998 * 110.48705 * 335.78396 * 15 8 6 41 41 H 1.08998 * 110.48183 * 98.42692 * 15 8 6 42 42 H 1.09000 * 110.41356 * 201.69193 * 16 5 4 43 43 H 1.09000 * 110.50931 * 79.30458 * 16 5 4 44 44 H 0.96998 * 120.00386 * 25.00343 * 19 17 2 45 45 H 0.96995 * 119.99416 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0609 1.4350 0.0000 4 6 2.0667 -0.7707 -1.2254 5 7 3.2664 -1.4822 -0.7214 6 6 4.4425 -1.6676 -1.3531 7 8 4.6066 -1.2261 -2.4707 8 6 5.5533 -2.4237 -0.6710 9 1 5.2176 -3.4283 -0.4136 10 6 6.7830 -2.4994 -1.5929 11 6 7.9350 -1.7917 -0.8500 12 6 7.5353 -1.8809 0.6438 13 9 7.8500 -3.1397 1.1669 14 9 8.1524 -0.8666 1.3836 15 6 6.0007 -1.6729 0.6003 16 6 2.8803 -1.9416 0.6331 17 6 2.0665 -0.7704 1.2244 18 1 2.7096 -0.1271 1.8249 19 7 0.9556 -1.2785 2.0330 20 6 1.1372 -1.5259 3.3675 21 1 2.0994 -1.3461 3.8240 22 6 0.0845 -2.0069 4.1340 23 7 -1.0883 -2.2255 3.5778 24 14 0.3322 -2.3437 5.9545 25 1 0.7310 -1.0885 6.6404 26 1 -0.9352 -2.8479 6.5415 27 1 1.3978 -3.3631 6.1288 28 1 -0.3634 0.5246 -0.8836 29 1 -0.3632 -1.0276 -0.0126 30 1 -0.3633 0.5028 0.8962 31 1 1.7154 1.9502 0.8963 32 1 3.1507 1.4192 -0.0126 33 1 1.6949 1.9578 -0.8836 34 1 1.3236 -1.4844 -1.5808 35 1 2.3400 -0.0774 -2.0207 36 1 7.0445 -3.5406 -1.7819 37 1 6.5764 -1.9889 -2.5336 38 1 8.8773 -2.3110 -1.0244 39 1 8.0084 -0.7504 -1.1637 40 1 5.7616 -0.6124 0.5210 41 1 5.5315 -2.1057 1.4838 42 1 3.7674 -2.1312 1.2375 43 1 2.2647 -2.8390 0.5710 44 1 0.0913 -1.4397 1.6232 45 1 -1.8237 -2.5619 4.1132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995879359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:46 Heat of formation + Delta-G solvation = -124.905435 kcal Electronic energy + Delta-G solvation = -28252.203240 eV Core-core repulsion = 24133.356346 eV Total energy + Delta-G solvation = -4118.846894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.97394 -47.14208 -40.35973 -38.50854 -36.49646 -34.21567 -33.23689 -30.87425 -29.78250 -28.41776 -27.68183 -26.94646 -26.00230 -23.95279 -22.26011 -21.46174 -21.26600 -19.05015 -18.49138 -17.84531 -17.37231 -16.98209 -16.71642 -16.14120 -15.54303 -15.39028 -14.93193 -14.48362 -14.25928 -14.07962 -13.85226 -13.64692 -13.61082 -13.45429 -13.18200 -12.87230 -12.64847 -12.49970 -12.24596 -12.04094 -11.79274 -11.75469 -11.57391 -11.52700 -11.27635 -11.00866 -10.95753 -10.93787 -10.76551 -10.57225 -10.51244 -10.25527 -9.93762 -9.77688 -9.65135 -9.06907 -8.48705 -7.11113 -5.88911 -3.19060 2.64186 3.03584 3.37383 3.42931 3.43240 3.53369 3.62867 3.97982 4.21281 4.48431 4.61233 4.74951 4.92139 4.93160 5.03313 5.04166 5.07551 5.15829 5.17400 5.39954 5.43464 5.51315 5.59505 5.66744 5.72178 5.76598 5.81694 5.84519 5.93093 5.95176 6.01749 6.12115 6.21322 6.25755 6.27978 6.38140 6.45559 6.56422 6.78748 6.89237 7.59309 7.74728 8.22007 8.29965 9.41757 9.95853 10.30590 11.33073 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012263 B = 0.004484 C = 0.003597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2282.676823 B = 6243.027342 C = 7783.335851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.117 3.883 5 N -0.614 5.614 6 C 0.539 3.461 7 O -0.550 6.550 8 C -0.107 4.107 9 H 0.108 0.892 10 C -0.116 4.116 11 C -0.155 4.155 12 C 0.277 3.723 13 F -0.191 7.191 14 F -0.195 7.195 15 C -0.150 4.150 16 C 0.068 3.932 17 C 0.176 3.824 18 H 0.063 0.937 19 N -0.715 5.715 20 C -0.250 4.250 21 H 0.070 0.930 22 C -0.006 4.006 23 N -0.930 5.930 24 Si 0.906 3.094 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.391 0.609 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 1.812 -9.882 16.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.188 4.188 4 C -0.006 4.006 5 N -0.346 5.346 6 C 0.327 3.673 7 O -0.429 6.429 8 C -0.128 4.128 9 H 0.126 0.874 10 C -0.153 4.153 11 C -0.193 4.193 12 C 0.241 3.759 13 F -0.172 7.172 14 F -0.176 7.176 15 C -0.188 4.188 16 C -0.057 4.057 17 C 0.064 3.936 18 H 0.081 0.919 19 N -0.358 5.358 20 C -0.380 4.380 21 H 0.088 0.912 22 C -0.203 4.203 23 N -0.577 5.577 24 Si 0.737 3.263 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.212 1.212 28 H 0.064 0.936 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.110 0.890 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.229 0.771 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.113 1.991 -10.286 16.784 hybrid contribution -0.134 -0.495 1.272 1.371 sum 12.979 1.496 -9.014 15.873 Atomic orbital electron populations 1.21677 0.93078 1.02328 1.01659 1.21772 0.96703 0.95392 0.95167 1.21789 1.00253 0.95067 1.01648 1.22484 0.86044 0.95385 0.96678 1.49023 1.12413 1.54644 1.18569 1.19855 0.81948 0.79978 0.85504 1.90644 1.81060 1.51779 1.19448 1.21785 0.95115 1.00743 0.95203 0.87357 1.22146 0.91221 1.01974 1.00008 1.23315 1.00734 1.04316 0.90958 1.22001 0.92955 0.71804 0.89178 1.93014 1.94173 1.41500 1.88520 1.93005 1.84865 1.60009 1.79719 1.23367 0.92015 1.03995 0.99453 1.23859 1.00060 1.00887 0.80928 1.21099 0.90429 0.91726 0.90377 0.91857 1.42709 1.09417 1.77178 1.06452 1.19205 0.96556 1.37121 0.85164 0.91187 1.24730 0.95711 1.01708 0.98152 1.69641 1.01594 1.51029 1.35458 0.86291 0.76781 0.78081 0.85156 1.21182 1.21656 1.21183 0.93649 0.91940 0.90921 0.92099 0.93177 0.93042 0.91207 0.90466 0.90265 0.87734 0.88978 0.88245 0.87821 0.87729 0.90933 0.90397 0.77108 0.93290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 7.11 37.16 0.26 -1.76 16 2 C -0.09 -1.33 1.03 -153.10 -0.16 -1.49 16 3 C -0.13 -1.77 8.24 37.16 0.31 -1.47 16 4 C 0.12 1.69 6.15 -2.32 -0.01 1.67 16 5 N -0.61 -8.96 3.32 -169.17 -0.56 -9.52 16 6 C 0.54 7.73 7.11 -10.99 -0.08 7.65 16 7 O -0.55 -9.26 15.48 5.56 0.09 -9.18 16 8 C -0.11 -1.22 2.77 -90.65 -0.25 -1.47 16 9 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 10 C -0.12 -1.15 6.40 -25.61 -0.16 -1.31 16 11 C -0.16 -1.42 6.43 -25.07 -0.16 -1.58 16 12 C 0.28 3.11 2.51 -24.72 -0.06 3.05 16 13 F -0.19 -2.37 17.21 2.25 0.04 -2.33 16 14 F -0.20 -2.46 17.21 2.25 0.04 -2.42 16 15 C -0.15 -1.69 4.84 -25.05 -0.12 -1.81 16 16 C 0.07 1.07 6.49 -2.41 -0.02 1.05 16 17 C 0.18 3.10 3.35 -66.53 -0.22 2.88 16 18 H 0.06 1.15 7.66 -51.93 -0.40 0.76 16 19 N -0.71 -15.91 4.60 -52.07 -0.24 -16.15 16 20 C -0.25 -6.33 9.96 -15.06 -0.15 -6.48 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.93 -26.27 13.06 55.49 0.72 -25.55 16 24 Si 0.91 21.26 29.55 -169.99 -5.02 16.23 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 1.05 6.87 -51.93 -0.36 0.69 16 30 H 0.07 1.29 7.84 -51.93 -0.41 0.88 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 35 H 0.08 1.11 7.60 -51.93 -0.39 0.71 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.17 6.39 -51.93 -0.33 0.84 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.19 7.85 -51.93 -0.41 0.78 16 41 H 0.10 1.19 6.56 -51.93 -0.34 0.85 16 42 H 0.07 1.05 5.03 -51.93 -0.26 0.79 16 43 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 44 H 0.39 9.20 5.09 -40.82 -0.21 8.99 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -28.83 357.69 -7.33 -36.16 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.86 Total: 8.70 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -0.92 Total: -1.34 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.08 Total: -51.22 kcal Atomic # 8 Polarization: -9.26 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.08 Total: -4.76 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.83 -7.33 -36.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995879359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.745 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds