Wall clock time and date at job start Tue Mar 31 2020 11:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.79863 * 2 1 4 4 C 1.54939 * 110.73800 * 236.71193 * 2 1 3 5 5 N 1.48116 * 103.26030 * 279.03571 * 4 2 1 6 6 C 1.34776 * 127.03476 * 140.67167 * 5 4 2 7 7 O 1.21276 * 120.00320 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.99580 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.46831 * 180.02562 * 8 6 5 10 10 C 1.53779 * 113.61181 * 274.13541 * 9 8 6 11 11 C 1.53960 * 87.01812 * 220.04428 * 10 9 8 12 12 F 1.39890 * 113.54058 * 270.81062 * 11 10 9 13 13 F 1.39909 * 113.66288 * 139.92809 * 11 10 9 14 14 C 1.53779 * 87.11114 * 25.36354 * 11 10 9 15 15 C 1.47489 * 105.93167 * 320.71184 * 5 4 2 16 16 C 1.54009 * 107.08066 * 25.44109 * 15 5 4 17 17 H 1.09005 * 110.32170 * 117.69389 * 16 15 5 18 18 N 1.46499 * 110.32681 * 239.80187 * 16 15 5 19 19 C 1.36935 * 119.99938 * 273.54819 * 18 16 15 20 20 H 1.08000 * 120.00518 * 359.72965 * 19 18 16 21 21 C 1.38817 * 119.99990 * 179.97438 * 19 18 16 22 22 N 1.31614 * 119.99892 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99858 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47174 * 89.99644 * 23 21 19 25 25 H 1.48494 * 109.46800 * 209.99692 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99394 * 23 21 19 27 27 H 1.08996 * 109.47028 * 296.69999 * 1 2 3 28 28 H 1.08999 * 109.47206 * 56.71100 * 1 2 3 29 29 H 1.09003 * 109.46975 * 176.70558 * 1 2 3 30 30 H 1.09007 * 109.47305 * 183.28978 * 3 2 1 31 31 H 1.08996 * 109.47873 * 303.29494 * 3 2 1 32 32 H 1.09000 * 109.47281 * 63.29472 * 3 2 1 33 33 H 1.09007 * 110.66228 * 160.59794 * 4 2 1 34 34 H 1.09002 * 110.66651 * 37.48199 * 4 2 1 35 35 H 1.09003 * 109.47056 * 299.99333 * 8 6 5 36 36 H 1.08993 * 109.47625 * 60.00149 * 8 6 5 37 37 H 1.09002 * 112.84945 * 45.32788 * 9 8 6 38 38 H 1.08999 * 113.61589 * 334.56127 * 10 9 8 39 39 H 1.08998 * 113.61718 * 105.47209 * 10 9 8 40 40 H 1.09000 * 113.61606 * 220.08938 * 14 11 10 41 41 H 1.08998 * 113.69568 * 89.19223 * 14 11 10 42 42 H 1.08993 * 109.91232 * 266.08361 * 15 5 4 43 43 H 1.08999 * 110.07239 * 144.89007 * 15 5 4 44 44 H 0.96999 * 119.99984 * 93.54754 * 18 16 15 45 45 H 0.97005 * 119.99715 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0733 1.4302 0.0000 4 6 2.0786 -0.7953 -1.2113 5 7 1.9872 -2.2038 -0.7624 6 6 1.6222 -3.2695 -1.5024 7 8 1.3250 -3.1245 -2.6692 8 6 1.5833 -4.6414 -0.8798 9 6 1.1412 -5.6647 -1.9278 10 6 -0.3857 -5.7983 -2.0524 11 6 -0.1608 -7.3147 -2.1943 12 9 0.0309 -7.7298 -3.5163 13 9 -1.1056 -8.0888 -1.5119 14 6 1.1498 -7.1145 -1.4152 15 6 2.3764 -2.2015 0.6602 16 6 2.0776 -0.7937 1.2086 17 1 1.3293 -0.8464 1.9994 18 7 3.3053 -0.1723 1.7115 19 6 3.7116 -0.4027 2.9987 20 1 3.1247 -1.0389 3.6447 21 6 4.8752 0.1857 3.4751 22 7 5.2654 -0.0353 4.7125 23 14 5.8863 1.2922 2.3603 24 1 5.4167 2.6943 2.4966 25 1 7.3176 1.2096 2.7473 26 1 5.7285 0.8520 0.9508 27 1 -0.3633 0.4617 0.9181 28 1 -0.3633 0.5640 -0.8590 29 1 -0.3633 -1.0260 -0.0591 30 1 3.1615 1.4056 -0.0590 31 1 1.6750 1.9703 -0.8589 32 1 1.7706 1.9339 0.9180 33 1 3.1145 -0.5225 -1.4132 34 1 1.4580 -0.6313 -2.0922 35 1 2.5764 -4.9026 -0.5139 36 1 0.8778 -4.6436 -0.0490 37 1 1.6478 -5.5367 -2.8844 38 1 -0.9238 -5.5196 -1.1463 39 1 -0.7933 -5.3307 -2.9487 40 1 1.9802 -7.7080 -1.7978 41 1 1.0339 -7.1962 -0.3345 42 1 3.4403 -2.4185 0.7544 43 1 1.7962 -2.9441 1.2079 44 1 3.8304 0.4022 1.1326 45 1 6.0783 0.3761 5.0455 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995968920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:32 Heat of formation + Delta-G solvation = -98.604168 kcal Electronic energy + Delta-G solvation = -27376.626840 eV Core-core repulsion = 23258.920455 eV Total energy + Delta-G solvation = -4117.706385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.00719 -47.34801 -40.28850 -38.82688 -37.45340 -34.22921 -33.32250 -31.19503 -30.40626 -28.19229 -27.04125 -26.53563 -26.26586 -23.86539 -23.16939 -21.55028 -20.22296 -19.28047 -18.85956 -17.70440 -17.52530 -16.91772 -16.73085 -16.45523 -15.98329 -15.41445 -15.03058 -14.57622 -14.45829 -14.21669 -14.00619 -13.77763 -13.65933 -13.51227 -13.12472 -12.94925 -12.82709 -12.63828 -12.51656 -12.15902 -12.07774 -11.84469 -11.63965 -11.50614 -11.39587 -11.23672 -11.12437 -11.05633 -10.69535 -10.66011 -10.57281 -10.38079 -9.99338 -9.76385 -9.65489 -9.09822 -8.46699 -7.44662 -5.90027 -3.27342 2.71892 3.05901 3.25179 3.27068 3.29642 3.36958 3.54789 4.00850 4.09230 4.12553 4.46783 4.55344 4.83425 4.90125 4.95971 4.99582 5.11171 5.14426 5.19822 5.25434 5.30499 5.43617 5.45715 5.51150 5.53420 5.55229 5.57641 5.74436 5.81514 5.86461 5.95509 6.01245 6.06141 6.11389 6.18670 6.23094 6.33924 6.43330 6.59376 6.69246 7.73097 7.85101 8.25288 8.28933 9.06047 9.78339 9.96763 11.27748 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019332 B = 0.003067 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.024664 B = 9127.316197 C = 9788.379261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 C -0.129 4.129 4 C 0.116 3.884 5 N -0.614 5.614 6 C 0.530 3.470 7 O -0.553 6.553 8 C -0.126 4.126 9 C -0.086 4.086 10 C -0.157 4.157 11 C 0.251 3.749 12 F -0.181 7.181 13 F -0.193 7.193 14 C -0.162 4.162 15 C 0.073 3.927 16 C 0.182 3.818 17 H 0.074 0.926 18 N -0.740 5.740 19 C -0.252 4.252 20 H 0.092 0.908 21 C 0.011 3.989 22 N -0.929 5.929 23 Si 0.879 3.121 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.277 1.277 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.365 0.635 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.146 -8.852 -12.088 18.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.093 4.093 3 C -0.187 4.187 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.319 3.681 7 O -0.432 6.432 8 C -0.165 4.165 9 C -0.105 4.105 10 C -0.195 4.195 11 C 0.215 3.785 12 F -0.162 7.162 13 F -0.174 7.174 14 C -0.200 4.200 15 C -0.053 4.053 16 C 0.070 3.930 17 H 0.092 0.908 18 N -0.383 5.383 19 C -0.381 4.381 20 H 0.110 0.890 21 C -0.186 4.186 22 N -0.576 5.576 23 Si 0.709 3.291 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.204 1.204 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.133 0.867 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.201 0.799 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.298 -8.960 -12.496 18.507 hybrid contribution 0.896 0.548 -0.628 1.224 sum -9.402 -8.412 -13.125 18.205 Atomic orbital electron populations 1.21687 0.93649 1.01523 1.01699 1.21945 0.95908 0.95832 0.95571 1.21642 1.00860 0.94352 1.01874 1.22517 1.00819 0.80093 0.97244 1.48852 1.65941 1.07307 1.12660 1.20154 0.76582 0.85426 0.85963 1.90675 1.50140 1.85818 1.16567 1.21577 1.04603 0.91524 0.98831 1.22152 0.95595 0.92481 1.00274 1.24190 0.98443 0.91151 1.05704 1.22174 0.89747 0.90006 0.76598 1.93012 1.95320 1.91766 1.36067 1.93007 1.67293 1.78249 1.78873 1.24190 0.95906 0.97609 1.02303 1.23410 1.01103 1.01518 0.79239 1.21051 0.89714 0.88920 0.93285 0.90809 1.42978 1.25320 1.57372 1.12657 1.19058 1.06143 1.25804 0.87103 0.89027 1.24656 0.97972 1.00006 0.95952 1.69689 1.25324 1.47799 1.14772 0.86654 0.80445 0.81550 0.80436 1.20844 1.21626 1.20362 0.92125 0.92854 0.92851 0.92462 0.93142 0.91328 0.91295 0.90344 0.88035 0.88385 0.86920 0.87147 0.88538 0.88679 0.86728 0.90266 0.91540 0.79920 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 8.49 37.16 0.32 -1.24 16 2 C -0.09 -1.27 0.93 -152.64 -0.14 -1.41 16 3 C -0.13 -1.82 7.83 37.15 0.29 -1.53 16 4 C 0.12 1.64 5.98 -2.13 -0.01 1.63 16 5 N -0.61 -8.63 3.19 -169.76 -0.54 -9.18 16 6 C 0.53 7.23 7.89 -10.98 -0.09 7.14 16 7 O -0.55 -9.12 16.00 5.56 0.09 -9.04 16 8 C -0.13 -1.23 4.60 -27.88 -0.13 -1.36 16 9 C -0.09 -0.80 3.09 -89.81 -0.28 -1.08 16 10 C -0.16 -1.44 7.43 -25.83 -0.19 -1.64 16 11 C 0.25 2.46 3.28 -25.83 -0.08 2.38 16 12 F -0.18 -2.08 17.38 2.25 0.04 -2.04 16 13 F -0.19 -2.13 17.41 2.25 0.04 -2.09 16 14 C -0.16 -1.26 7.43 -25.92 -0.19 -1.45 16 15 C 0.07 1.08 6.55 -2.97 -0.02 1.06 16 16 C 0.18 3.01 3.09 -66.56 -0.21 2.80 16 17 H 0.07 1.25 7.83 -51.93 -0.41 0.85 16 18 N -0.74 -15.39 4.31 -52.09 -0.22 -15.61 16 19 C -0.25 -6.41 10.45 -15.06 -0.16 -6.57 16 20 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 21 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 22 N -0.93 -27.56 13.97 55.49 0.78 -26.78 16 23 Si 0.88 20.74 27.74 -169.99 -4.71 16.02 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.06 0.88 6.23 -51.93 -0.32 0.55 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 1.02 8.02 -51.92 -0.42 0.60 16 34 H 0.08 1.10 7.76 -51.93 -0.40 0.70 16 35 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 0.81 7.65 -51.93 -0.40 0.41 16 37 H 0.11 1.21 7.73 -51.93 -0.40 0.81 16 38 H 0.11 0.87 7.92 -51.93 -0.41 0.46 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.11 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.08 1.33 7.92 -51.93 -0.41 0.92 16 43 H 0.07 0.85 7.55 -51.93 -0.39 0.46 16 44 H 0.37 7.59 3.37 -40.82 -0.14 7.45 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -30.36 364.79 -7.12 -37.48 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.09 Total: 6.79 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.99 Total: -1.06 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.01 Total: -51.57 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.04 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.08 Total: -4.13 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.71 Total: 16.02 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.36 -7.12 -37.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995968920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.122 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds