Wall clock time and date at job start Tue Mar 31 2020 11:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.91408 * 2 1 4 4 C 1.54907 * 111.00131 * 123.90238 * 2 1 3 5 5 N 1.47420 * 104.83524 * 81.06567 * 4 2 1 6 6 C 1.34775 * 125.65051 * 204.16394 * 5 4 2 7 7 O 1.21275 * 119.99840 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00105 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47063 * 179.97438 * 8 6 5 10 10 C 1.53779 * 113.61635 * 274.13522 * 9 8 6 11 11 C 1.53956 * 87.02088 * 220.05005 * 10 9 8 12 12 F 1.39901 * 113.53472 * 270.81005 * 11 10 9 13 13 F 1.39900 * 113.74324 * 139.94299 * 11 10 9 14 14 C 1.53777 * 87.10838 * 25.36321 * 11 10 9 15 15 C 1.47026 * 108.70428 * 24.12518 * 5 4 2 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 5 4 17 17 H 1.08991 * 110.72004 * 219.44241 * 16 15 5 18 18 N 1.46499 * 110.71556 * 96.16892 * 16 15 5 19 19 C 1.36946 * 119.99920 * 86.45572 * 18 16 15 20 20 H 1.08000 * 119.99914 * 359.97438 * 19 18 16 21 21 C 1.38808 * 120.00049 * 179.97438 * 19 18 16 22 22 N 1.31615 * 120.00150 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00020 * 0.02562 * 21 19 18 24 24 H 1.48503 * 109.47363 * 89.99791 * 23 21 19 25 25 H 1.48499 * 109.47301 * 209.99812 * 23 21 19 26 26 H 1.48496 * 109.47276 * 330.00116 * 23 21 19 27 27 H 1.08996 * 109.47442 * 297.55335 * 1 2 3 28 28 H 1.09002 * 109.47243 * 57.55100 * 1 2 3 29 29 H 1.09001 * 109.47331 * 177.55307 * 1 2 3 30 30 H 1.09004 * 109.46972 * 182.44575 * 3 2 1 31 31 H 1.08998 * 109.47042 * 302.44208 * 3 2 1 32 32 H 1.08993 * 109.47294 * 62.44945 * 3 2 1 33 33 H 1.08997 * 110.36783 * 322.22286 * 4 2 1 34 34 H 1.08997 * 110.45914 * 199.94937 * 4 2 1 35 35 H 1.09003 * 109.47130 * 299.99857 * 8 6 5 36 36 H 1.09005 * 109.46867 * 59.99839 * 8 6 5 37 37 H 1.08996 * 112.84881 * 45.33863 * 9 8 6 38 38 H 1.08998 * 113.61467 * 334.57037 * 10 9 8 39 39 H 1.09001 * 113.61453 * 105.46853 * 10 9 8 40 40 H 1.09009 * 113.61329 * 220.08633 * 14 11 10 41 41 H 1.08998 * 113.69088 * 89.20238 * 14 11 10 42 42 H 1.08998 * 109.88351 * 118.35702 * 15 5 4 43 43 H 1.08998 * 109.88379 * 239.52492 * 15 5 4 44 44 H 0.96998 * 120.00239 * 266.45268 * 18 16 15 45 45 H 0.96997 * 120.00275 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0852 -0.8066 1.2003 5 7 2.0139 -2.2159 0.7734 6 6 1.9457 -3.2828 1.5940 7 8 1.9399 -3.1236 2.7963 8 6 1.8766 -4.6735 1.0178 9 6 1.8077 -5.6942 2.1555 10 6 3.1865 -6.1061 2.6978 11 6 2.6346 -7.5407 2.7845 12 9 2.0156 -7.8283 4.0058 13 9 3.5531 -8.5220 2.3966 14 6 1.6489 -7.1454 1.6723 15 6 2.0285 -2.2647 -0.6960 16 6 2.0861 -0.8079 -1.2022 17 1 1.4524 -0.6792 -2.0796 18 7 3.4666 -0.4157 -1.4961 19 6 4.0066 -0.6806 -2.7265 20 1 3.4148 -1.1791 -3.4799 21 6 5.3145 -0.3085 -3.0051 22 7 5.8333 -0.5627 -4.1877 23 14 6.3384 0.5531 -1.7017 24 1 7.0618 -0.4593 -0.8912 25 1 7.3192 1.4542 -2.3583 26 1 5.4482 1.3493 -0.8193 27 1 -0.3634 0.4753 0.9111 28 1 -0.3634 0.5514 -0.8672 29 1 -0.3634 -1.0267 -0.0439 30 1 3.1650 1.4020 -0.0439 31 1 1.6909 1.9653 -0.8673 32 1 1.7619 1.9382 0.9111 33 1 1.4672 -0.6461 2.0836 34 1 3.1179 -0.5239 1.4043 35 1 0.9877 -4.7644 0.3934 36 1 2.7650 -4.8615 0.4147 37 1 1.0985 -5.4131 2.9339 38 1 3.9927 -5.9915 1.9733 39 1 3.4226 -5.6687 3.6679 40 1 0.6453 -7.5460 1.8157 41 1 2.0326 -7.3152 0.6664 42 1 2.9063 -2.8117 -1.0400 43 1 1.1218 -2.7480 -1.0599 44 1 3.9983 0.0318 -0.8193 45 1 6.7474 -0.3030 -4.3824 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995968921.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:35 Heat of formation + Delta-G solvation = -120.779122 kcal Electronic energy + Delta-G solvation = -27496.707272 eV Core-core repulsion = 23378.039308 eV Total energy + Delta-G solvation = -4118.667964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.83284 -48.18358 -41.44391 -39.83509 -38.43549 -35.80213 -34.61586 -33.01704 -31.26344 -29.70681 -28.08797 -27.39668 -27.19696 -25.46077 -24.10249 -22.88366 -20.99331 -20.58881 -20.09068 -19.37142 -18.38494 -17.93743 -17.53534 -17.34949 -17.10452 -16.77834 -16.34037 -16.04704 -15.44304 -15.31395 -15.05030 -14.96212 -14.62055 -14.49833 -14.38803 -14.20168 -13.76724 -13.66716 -13.55152 -13.39707 -13.34456 -13.11886 -12.89745 -12.82102 -12.69520 -12.31779 -12.17021 -12.13422 -11.95442 -11.87571 -11.81109 -11.56050 -11.39317 -11.30926 -11.00844 -10.80734 -9.60670 -9.29393 -8.00071 -5.32167 1.36507 1.38137 1.45035 1.66139 2.04932 2.48223 2.50758 2.82438 3.22203 3.30892 3.33008 3.36904 3.46669 3.56768 3.81243 3.88071 3.99754 4.17693 4.29556 4.38352 4.45349 4.46379 4.52486 4.60644 4.63102 4.66887 4.72579 4.77323 4.81248 4.86120 4.87008 4.94643 5.02606 5.08595 5.08902 5.27160 5.29407 5.34110 5.39845 5.52134 5.82747 6.24471 6.60623 7.09970 7.18245 7.86513 8.03208 9.20981 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.003608 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.154663 B = 7758.218094 C = 8930.352108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.609 5.609 6 C 0.521 3.479 7 O -0.586 6.586 8 C -0.119 4.119 9 C -0.083 4.083 10 C -0.164 4.164 11 C 0.240 3.760 12 F -0.193 7.193 13 F -0.202 7.202 14 C -0.141 4.141 15 C 0.081 3.919 16 C 0.172 3.828 17 H 0.081 0.919 18 N -0.741 5.741 19 C -0.219 4.219 20 H 0.071 0.929 21 C -0.054 4.054 22 N -0.980 5.980 23 Si 0.934 3.066 24 H -0.288 1.288 25 H -0.299 1.299 26 H -0.252 1.252 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.134 0.866 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.363 0.637 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 -7.812 11.456 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.081 4.081 3 C -0.188 4.188 4 C -0.007 4.007 5 N -0.342 5.342 6 C 0.311 3.689 7 O -0.467 6.467 8 C -0.158 4.158 9 C -0.102 4.102 10 C -0.202 4.202 11 C 0.204 3.796 12 F -0.174 7.174 13 F -0.183 7.183 14 C -0.179 4.179 15 C -0.044 4.044 16 C 0.062 3.938 17 H 0.099 0.901 18 N -0.384 5.384 19 C -0.350 4.350 20 H 0.089 0.911 21 C -0.246 4.246 22 N -0.631 5.631 23 Si 0.763 3.237 24 H -0.215 1.215 25 H -0.227 1.227 26 H -0.176 1.176 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.064 0.936 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.080 0.920 43 H 0.112 0.888 44 H 0.198 0.802 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.415 -7.895 11.927 19.610 hybrid contribution 1.614 0.407 0.678 1.797 sum -11.801 -7.489 12.605 18.821 Atomic orbital electron populations 1.21633 0.91064 1.02457 1.02851 1.21998 0.97471 0.95140 0.93457 1.21637 1.00164 0.94434 1.02525 1.22244 0.99852 0.80813 0.97755 1.48551 1.71637 1.06124 1.07842 1.20894 0.75183 0.87013 0.85762 1.90661 1.52906 1.86984 1.16172 1.21631 1.06831 0.88597 0.98723 1.22053 0.96808 0.93442 0.97902 1.24271 1.00080 0.91189 1.04649 1.22496 0.88427 0.86000 0.82719 1.92984 1.83029 1.94651 1.46729 1.92987 1.68323 1.66457 1.90549 1.24149 1.00711 0.94187 0.98827 1.23011 1.02165 1.00802 0.78418 1.21446 0.85228 0.90943 0.96139 0.90094 1.42844 1.11513 1.71163 1.12871 1.19043 0.95509 1.29955 0.90460 0.91121 1.25268 0.98533 1.02783 0.98016 1.69834 1.15482 1.54818 1.22920 0.85739 0.79331 0.78853 0.79748 1.21535 1.22653 1.17645 0.91414 0.91231 0.92137 0.94278 0.91755 0.90929 0.90480 0.93637 0.85355 0.87326 0.88153 0.86388 0.90063 0.87011 0.84766 0.92017 0.88798 0.80200 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 8.61 71.98 0.62 -1.73 16 2 C -0.08 -1.99 0.83 -50.79 -0.04 -2.03 16 3 C -0.13 -3.35 8.35 71.98 0.60 -2.75 16 4 C 0.12 3.21 5.81 86.86 0.50 3.71 16 5 N -0.61 -16.42 3.31 -811.81 -2.69 -19.11 16 6 C 0.52 13.90 7.85 87.66 0.69 14.58 16 7 O -0.59 -19.58 16.04 -3.02 -0.05 -19.62 16 8 C -0.12 -2.11 4.72 29.85 0.14 -1.97 16 9 C -0.08 -1.47 3.09 -10.27 -0.03 -1.51 16 10 C -0.16 -3.28 7.44 31.18 0.23 -3.05 16 11 C 0.24 4.77 3.28 31.18 0.10 4.87 16 12 F -0.19 -4.51 17.38 44.97 0.78 -3.73 16 13 F -0.20 -4.61 17.41 44.97 0.78 -3.83 16 14 C -0.14 -1.90 7.43 31.12 0.23 -1.67 16 15 C 0.08 2.16 5.84 86.73 0.51 2.67 16 16 C 0.17 5.28 2.87 46.18 0.13 5.42 16 17 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 18 N -0.74 -30.19 4.39 -317.33 -1.39 -31.59 16 19 C -0.22 -11.15 10.46 84.03 0.88 -10.27 16 20 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 21 C -0.05 -2.99 5.50 84.86 0.47 -2.53 16 22 N -0.98 -59.70 13.97 21.65 0.30 -59.39 16 23 Si 0.93 43.70 27.74 68.60 1.90 45.60 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 26 H -0.25 -10.58 6.52 99.48 0.65 -9.94 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.11 7.81 -2.39 -0.02 1.09 16 30 H 0.04 1.20 6.17 -2.38 -0.01 1.18 16 31 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.08 2.06 7.95 -2.39 -0.02 2.04 16 34 H 0.05 1.42 8.04 -2.39 -0.02 1.40 16 35 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 1.82 7.87 -2.38 -0.02 1.80 16 37 H 0.10 2.06 7.73 -2.39 -0.02 2.04 16 38 H 0.12 2.18 7.92 -2.39 -0.02 2.16 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.13 1.33 8.10 -2.39 -0.02 1.31 16 42 H 0.06 1.92 8.04 -2.39 -0.02 1.90 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 44 H 0.36 14.97 3.88 -92.71 -0.36 14.61 16 45 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -67.60 366.09 5.24 -62.36 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.57 Total: 25.56 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: 5.03 Total: 3.75 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -3.78 Total: -110.10 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.05 Total: -19.62 kcal Atomic # 9 Polarization: -9.12 SS G_CDS: 1.56 Total: -7.56 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.90 Total: 45.60 kcal Total: -67.60 5.24 -62.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995968921.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.416 kcal (2) G-P(sol) polarization free energy of solvation -67.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds