Wall clock time and date at job start Tue Mar 31 2020 11:24:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 110.77855 * 2 1 4 4 C 1.54320 * 110.71830 * 123.23665 * 2 1 3 5 5 N 1.47017 * 107.27428 * 140.55714 * 4 2 1 6 6 C 1.34772 * 125.65218 * 181.02369 * 5 4 2 7 7 O 1.21280 * 120.00025 * 4.15539 * 6 5 4 8 8 C 1.50706 * 120.00160 * 184.15778 * 6 5 4 9 9 C 1.53002 * 112.84833 * 275.37407 * 8 6 5 10 10 F 1.39904 * 109.46921 * 294.50279 * 9 8 6 11 11 F 1.39894 * 109.46914 * 54.50105 * 9 8 6 12 12 C 1.53778 * 113.61568 * 144.17794 * 8 6 5 13 13 C 1.53953 * 87.02278 * 220.04883 * 12 8 6 14 14 C 1.53780 * 113.61487 * 46.57182 * 8 6 5 15 15 C 1.47423 * 108.70109 * 1.28661 * 5 4 2 16 16 C 1.55129 * 104.72322 * 335.55524 * 15 5 4 17 17 H 1.09000 * 111.19045 * 279.19180 * 16 15 5 18 18 N 1.46498 * 110.90680 * 155.27196 * 16 15 5 19 19 C 1.36942 * 119.99767 * 92.97533 * 18 16 15 20 20 H 1.08002 * 119.99964 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99909 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99837 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99842 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47139 * 60.00279 * 23 21 19 25 25 H 1.48506 * 109.46519 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46867 * 299.99677 * 23 21 19 27 27 H 1.08995 * 109.47771 * 298.22003 * 1 2 3 28 28 H 1.09004 * 109.47233 * 58.21755 * 1 2 3 29 29 H 1.08998 * 109.47332 * 178.21408 * 1 2 3 30 30 H 1.09002 * 109.47184 * 181.77845 * 3 2 1 31 31 H 1.08995 * 109.47270 * 301.78183 * 3 2 1 32 32 H 1.09006 * 109.47228 * 61.78495 * 3 2 1 33 33 H 1.09006 * 109.88683 * 21.13861 * 4 2 1 34 34 H 1.09006 * 109.88636 * 259.97653 * 4 2 1 35 35 H 1.08999 * 109.46882 * 174.50670 * 9 8 6 36 36 H 1.09010 * 113.61582 * 334.56963 * 12 8 6 37 37 H 1.09002 * 113.61584 * 105.46808 * 12 8 6 38 38 H 1.08996 * 113.53515 * 270.81420 * 13 12 8 39 39 H 1.08996 * 113.66835 * 139.93269 * 13 12 8 40 40 H 1.09001 * 113.60873 * 254.52986 * 14 8 6 41 41 H 1.09003 * 113.61288 * 25.42861 * 14 8 6 42 42 H 1.09002 * 110.36767 * 94.48284 * 15 5 4 43 43 H 1.08998 * 110.36691 * 216.80340 * 15 5 4 44 44 H 0.97001 * 120.00483 * 272.97564 * 18 16 15 45 45 H 0.97001 * 119.99958 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 6 2.0759 -0.7911 1.2073 5 7 3.2444 -1.5507 0.7392 6 6 3.9921 -2.3835 1.4899 7 8 3.6755 -2.6145 2.6376 8 6 5.2218 -3.0277 0.9033 9 6 4.9083 -4.3069 0.1246 10 9 4.4216 -5.2805 1.0035 11 9 3.9428 -4.0344 -0.8504 12 6 6.3739 -3.1858 1.9095 13 6 7.3218 -2.7825 0.7653 14 6 6.1258 -2.0467 0.1383 15 6 3.4665 -1.2456 -0.6859 16 6 2.0790 -0.7955 -1.2137 17 1 1.4452 -1.6536 -1.4374 18 7 2.2215 0.0696 -2.3874 19 6 2.1869 -0.4714 -3.6449 20 1 2.0549 -1.5359 -3.7714 21 6 2.3215 0.3483 -4.7571 22 7 2.4829 1.6454 -4.6029 23 14 2.2735 -0.3897 -6.4725 24 1 0.9697 -1.0687 -6.6830 25 1 2.4377 0.6889 -7.4800 26 1 3.3744 -1.3756 -6.6181 27 1 -0.3634 0.4859 0.9054 28 1 -0.3634 0.5413 -0.8736 29 1 -0.3634 -1.0271 -0.0320 30 1 3.1620 1.4058 -0.0319 31 1 1.6956 1.9622 -0.8735 32 1 1.7474 1.9426 0.9056 33 1 1.3128 -1.4758 1.5777 34 1 2.3740 -0.1023 1.9978 35 1 5.8164 -4.6719 -0.3552 36 1 6.3430 -2.4640 2.7258 37 1 6.5152 -4.2102 2.2542 38 1 7.6737 -3.6273 0.1734 39 1 8.1276 -2.1186 1.0782 40 1 6.0669 -2.1528 -0.9449 41 1 6.0268 -1.0129 0.4694 42 1 4.1947 -0.4415 -0.7927 43 1 3.8031 -2.1362 -1.2166 44 1 2.3405 1.0255 -2.2738 45 1 2.5765 2.2182 -5.3801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996182983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:18 Heat of formation + Delta-G solvation = -101.414664 kcal Electronic energy + Delta-G solvation = -29017.837364 eV Core-core repulsion = 24900.009106 eV Total energy + Delta-G solvation = -4117.828258 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.05661 -47.04057 -40.60511 -38.87527 -37.28837 -34.14476 -33.14082 -30.81413 -28.86416 -27.52812 -27.01333 -26.61725 -25.79290 -24.20072 -23.89709 -21.68658 -20.19108 -18.91045 -18.65181 -17.70877 -17.34314 -17.18343 -17.02994 -16.09140 -15.64498 -15.38899 -14.81579 -14.46398 -14.09009 -13.98409 -13.78476 -13.71658 -13.39110 -12.98550 -12.91637 -12.81433 -12.70668 -12.62172 -12.32757 -12.06864 -11.84629 -11.74979 -11.54275 -11.47611 -11.26306 -11.02761 -10.90790 -10.68268 -10.60695 -10.53162 -10.43437 -10.24001 -9.86724 -9.70075 -9.53184 -8.98810 -8.31525 -7.07700 -5.85847 -3.15550 2.61345 3.10419 3.39272 3.44672 3.45073 3.59125 3.87528 3.99621 4.19784 4.45657 4.47998 4.57468 4.77171 4.88606 5.01784 5.10466 5.14307 5.19083 5.44021 5.49664 5.50676 5.62530 5.66938 5.71992 5.74159 5.77419 5.79247 5.87554 6.00536 6.02167 6.03416 6.15601 6.27007 6.32938 6.35744 6.47523 6.58495 6.66777 6.72828 6.90370 7.64251 7.77318 8.28376 8.33190 9.44809 9.98738 10.34466 11.36213 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.004998 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.543266 B = 5601.454991 C = 6599.671444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.133 4.133 4 C 0.120 3.880 5 N -0.601 5.601 6 C 0.542 3.458 7 O -0.544 6.544 8 C -0.164 4.164 9 C 0.293 3.707 10 F -0.197 7.197 11 F -0.188 7.188 12 C -0.100 4.100 13 C -0.146 4.146 14 C -0.117 4.117 15 C 0.060 3.940 16 C 0.183 3.817 17 H 0.068 0.932 18 N -0.709 5.709 19 C -0.246 4.246 20 H 0.071 0.929 21 C -0.008 4.008 22 N -0.931 5.931 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.389 0.611 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.134 -6.949 10.990 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.190 4.190 4 C -0.002 4.002 5 N -0.333 5.333 6 C 0.329 3.671 7 O -0.422 6.422 8 C -0.168 4.168 9 C 0.239 3.761 10 F -0.178 7.178 11 F -0.169 7.169 12 C -0.138 4.138 13 C -0.183 4.183 14 C -0.154 4.154 15 C -0.066 4.066 16 C 0.070 3.930 17 H 0.086 0.914 18 N -0.350 5.350 19 C -0.377 4.377 20 H 0.089 0.911 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.138 0.862 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.226 0.774 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.937 -7.193 11.436 15.186 hybrid contribution -0.107 -0.093 -1.014 1.024 sum 6.830 -7.285 10.422 14.434 Atomic orbital electron populations 1.21680 0.93435 1.01705 1.01781 1.21894 0.96095 0.95958 0.95061 1.21709 1.00882 0.94700 1.01745 1.22057 0.87421 0.94099 0.96662 1.48400 1.29126 1.43189 1.12612 1.19464 0.83102 0.79048 0.85504 1.90673 1.71168 1.62315 1.18007 1.23217 0.95773 0.96950 1.00905 1.21436 0.88965 0.85327 0.80407 1.93014 1.90057 1.64314 1.70436 1.92991 1.67022 1.93629 1.63244 1.22775 0.91137 1.03560 0.96293 1.23013 0.97100 1.00753 0.97457 1.23021 0.93140 0.98480 1.00796 1.23892 1.02534 1.01531 0.78619 1.21365 0.91829 0.93293 0.86525 0.91413 1.42424 1.86105 1.06486 0.99967 1.19232 1.42551 0.92680 0.83206 0.91081 1.24725 1.02414 0.95412 0.97845 1.69641 1.56163 1.02685 1.29379 0.86285 0.77935 0.77764 0.84290 1.21196 1.21700 1.21201 0.93244 0.91362 0.92858 0.92690 0.90899 0.93328 0.91709 0.91933 0.86226 0.88436 0.90089 0.89603 0.90113 0.89364 0.88324 0.91409 0.89601 0.77397 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.49 37.16 0.32 -1.59 16 2 C -0.09 -1.41 0.85 -152.68 -0.13 -1.54 16 3 C -0.13 -2.08 7.54 37.16 0.28 -1.80 16 4 C 0.12 1.89 6.05 -3.07 -0.02 1.87 16 5 N -0.60 -9.81 3.32 -170.38 -0.57 -10.38 16 6 C 0.54 8.93 6.40 -10.98 -0.07 8.86 16 7 O -0.54 -10.54 17.01 5.56 0.09 -10.45 16 8 C -0.16 -2.09 0.47 -154.85 -0.07 -2.16 16 9 C 0.29 3.63 4.52 37.16 0.17 3.80 16 10 F -0.20 -2.83 17.19 2.25 0.04 -2.80 16 11 F -0.19 -2.85 14.13 2.25 0.03 -2.81 16 12 C -0.10 -1.03 6.89 -25.83 -0.18 -1.20 16 13 C -0.15 -1.18 7.74 -25.83 -0.20 -1.38 16 14 C -0.12 -1.25 5.04 -25.92 -0.13 -1.38 16 15 C 0.06 1.01 4.50 -2.41 -0.01 1.00 16 16 C 0.18 3.45 2.97 -65.67 -0.19 3.25 16 17 H 0.07 1.37 7.99 -51.93 -0.41 0.95 16 18 N -0.71 -16.24 5.15 -51.24 -0.26 -16.50 16 19 C -0.25 -6.37 9.96 -15.06 -0.15 -6.52 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 23 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.05 0.88 7.42 -51.93 -0.39 0.49 16 31 H 0.07 1.28 6.75 -51.93 -0.35 0.93 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.03 7.82 -51.93 -0.41 0.62 16 34 H 0.06 0.95 7.84 -51.93 -0.41 0.54 16 35 H 0.12 1.00 7.32 -51.93 -0.38 0.62 16 36 H 0.10 1.07 8.07 -51.92 -0.42 0.65 16 37 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.09 0.55 7.61 -51.93 -0.40 0.16 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.95 7.75 -51.93 -0.40 0.55 16 41 H 0.10 1.12 7.86 -51.93 -0.41 0.71 16 42 H 0.07 1.17 7.16 -51.93 -0.37 0.80 16 43 H 0.09 1.48 4.51 -51.93 -0.23 1.25 16 44 H 0.39 9.37 5.45 -40.82 -0.22 9.15 16 45 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 356.12 15.07 5.37 5.37 Total: -1.00 -30.60 356.12 -6.96 -37.56 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -6.88 Total: 8.46 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -0.49 Total: 0.91 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.10 Total: -52.67 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.07 Total: -5.61 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.60 -6.96 -37.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996182983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.853 kcal (2) G-P(sol) polarization free energy of solvation -30.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds