Wall clock time and date at job start Tue Mar 31 2020 11:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 110.39220 * 2 1 4 4 C 1.54394 * 110.33979 * 237.77005 * 2 1 3 5 5 N 1.48144 * 104.61869 * 264.99489 * 4 2 1 6 6 C 1.34771 * 127.83486 * 140.38976 * 5 4 2 7 7 O 1.21286 * 120.00604 * 354.96265 * 6 5 4 8 8 C 1.50703 * 119.99894 * 174.95978 * 6 5 4 9 9 C 1.52999 * 112.85368 * 286.62960 * 8 6 5 10 10 F 1.39901 * 109.46690 * 65.38595 * 9 8 6 11 11 F 1.39891 * 109.47259 * 185.38817 * 9 8 6 12 12 C 1.53788 * 113.61290 * 155.31872 * 8 6 5 13 13 C 1.53781 * 87.08145 * 220.02172 * 12 8 6 14 14 C 1.53780 * 87.08168 * 25.43279 * 13 12 8 15 15 C 1.48144 * 104.32535 * 320.41960 * 5 4 2 16 16 C 1.54281 * 110.34540 * 122.23617 * 2 1 3 17 17 H 1.09003 * 110.34025 * 359.88796 * 16 2 1 18 18 N 1.46499 * 110.34285 * 237.74094 * 16 2 1 19 19 C 1.36934 * 119.99895 * 154.72393 * 18 16 2 20 20 H 1.08003 * 120.00166 * 0.27288 * 19 18 16 21 21 C 1.38816 * 119.99855 * 180.27407 * 19 18 16 22 22 N 1.31613 * 119.99935 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99883 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47249 * 89.99769 * 23 21 19 25 25 H 1.48501 * 109.46733 * 209.99792 * 23 21 19 26 26 H 1.48500 * 109.47080 * 329.99563 * 23 21 19 27 27 H 1.09001 * 109.46649 * 297.76554 * 1 2 3 28 28 H 1.08994 * 109.47124 * 57.76161 * 1 2 3 29 29 H 1.08995 * 109.47365 * 177.76770 * 1 2 3 30 30 H 1.08999 * 109.47247 * 182.23204 * 3 2 1 31 31 H 1.08997 * 109.47238 * 302.23649 * 3 2 1 32 32 H 1.09003 * 109.46896 * 62.23410 * 3 2 1 33 33 H 1.09000 * 110.40575 * 23.78447 * 4 2 1 34 34 H 1.09000 * 110.40481 * 146.09558 * 4 2 1 35 35 H 1.09001 * 109.46526 * 305.39142 * 9 8 6 36 36 H 1.08993 * 113.61744 * 334.57042 * 12 8 6 37 37 H 1.09002 * 113.60947 * 105.47412 * 12 8 6 38 38 H 1.09004 * 113.61482 * 270.88958 * 13 12 8 39 39 H 1.09004 * 113.61398 * 139.98391 * 13 12 8 40 40 H 1.08997 * 113.61934 * 220.01650 * 14 13 12 41 41 H 1.09008 * 113.61151 * 89.11102 * 14 13 12 42 42 H 1.09009 * 110.40191 * 280.79804 * 15 5 4 43 43 H 1.09001 * 110.40770 * 158.36994 * 15 5 4 44 44 H 0.96993 * 119.99947 * 334.99320 * 18 16 2 45 45 H 0.97002 * 119.99778 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0631 1.4341 0.0000 4 6 2.0667 -0.7721 -1.2246 5 7 2.3139 -2.1438 -0.7228 6 6 2.0768 -3.3104 -1.3546 7 8 1.5212 -3.3144 -2.4327 8 6 2.5022 -4.6102 -0.7215 9 6 4.0156 -4.8292 -0.7734 10 9 4.6538 -3.8617 0.0101 11 9 4.3196 -6.1028 -0.2811 12 6 1.6856 -5.8234 -1.1973 13 6 1.7177 -6.3168 0.2589 14 6 1.8931 -4.8456 0.6708 15 6 2.8801 -1.9423 0.6312 16 6 2.0664 -0.7716 1.2236 17 1 1.2398 -1.1490 1.8257 18 7 2.9309 0.0922 2.0315 19 6 3.0964 -0.1614 3.3669 20 1 2.5932 -1.0007 3.8237 21 6 3.9111 0.6605 4.1336 22 7 4.5247 1.6831 3.5769 23 14 4.1375 0.3142 5.9553 24 1 5.2964 -0.5945 6.1461 25 1 4.3849 1.5897 6.6745 26 1 2.9112 -0.3277 6.4933 27 1 -0.3633 0.4788 0.9094 28 1 -0.3633 0.5482 -0.8692 29 1 -0.3634 -1.0268 -0.0400 30 1 3.1522 1.4169 -0.0400 31 1 1.6759 1.9657 -0.8692 32 1 1.7409 1.9415 0.9094 33 1 1.3222 -0.7869 -2.0207 34 1 2.9938 -0.3229 -1.5806 35 1 4.3594 -4.7465 -1.8044 36 1 0.6866 -5.5665 -1.5493 37 1 2.2262 -6.4693 -1.8892 38 1 2.5812 -6.9407 0.4896 39 1 0.7767 -6.7544 0.5924 40 1 2.6011 -4.7021 1.4870 41 1 0.9507 -4.3213 0.8294 42 1 3.9354 -1.6772 0.5662 43 1 2.7494 -2.8402 1.2354 44 1 3.3829 0.8460 1.6213 45 1 5.0943 2.2572 4.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996182987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:21 Heat of formation + Delta-G solvation = -91.616596 kcal Electronic energy + Delta-G solvation = -29018.954585 eV Core-core repulsion = 24901.551203 eV Total energy + Delta-G solvation = -4117.403382 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.13963 -47.07544 -40.55671 -38.82128 -37.20258 -34.15717 -33.15045 -30.82008 -29.20964 -27.62418 -26.91910 -26.59480 -25.65661 -23.95524 -23.82295 -21.81153 -20.31135 -19.15423 -18.53418 -17.64840 -17.30876 -17.28734 -17.06382 -16.01808 -15.59960 -15.40625 -14.66573 -14.54171 -14.10539 -13.90540 -13.74214 -13.67787 -13.54842 -13.33317 -12.89649 -12.77740 -12.60586 -12.51447 -12.28677 -11.94794 -11.85717 -11.74533 -11.65050 -11.30408 -11.20368 -10.98498 -10.92452 -10.59239 -10.54516 -10.48102 -10.39732 -10.18143 -9.87022 -9.71577 -9.59398 -9.02186 -8.43651 -7.05433 -5.84502 -3.13949 2.49180 3.02729 3.39676 3.45415 3.46509 3.65843 3.89177 4.06025 4.11056 4.48545 4.55630 4.56683 4.80341 4.94225 5.02129 5.10109 5.16915 5.22208 5.48709 5.49902 5.55173 5.64726 5.68541 5.74466 5.77942 5.81910 5.84001 5.85000 5.97869 6.04358 6.15588 6.18051 6.29574 6.30467 6.31186 6.45224 6.51066 6.61078 6.84016 6.94804 7.64065 7.75653 8.19424 8.34269 9.46227 10.00870 10.35799 11.37743 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013243 B = 0.005057 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.833406 B = 5535.980834 C = 6775.150253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.089 4.089 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.607 5.607 6 C 0.550 3.450 7 O -0.547 6.547 8 C -0.165 4.165 9 C 0.295 3.705 10 F -0.187 7.187 11 F -0.195 7.195 12 C -0.098 4.098 13 C -0.148 4.148 14 C -0.119 4.119 15 C 0.073 3.927 16 C 0.175 3.825 17 H 0.062 0.938 18 N -0.714 5.714 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 H 0.060 0.940 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.391 0.609 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -11.620 -9.903 16.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.007 4.007 5 N -0.339 5.339 6 C 0.337 3.663 7 O -0.425 6.425 8 C -0.169 4.169 9 C 0.240 3.760 10 F -0.168 7.168 11 F -0.177 7.177 12 C -0.136 4.136 13 C -0.185 4.185 14 C -0.157 4.157 15 C -0.053 4.053 16 C 0.063 3.937 17 H 0.080 0.920 18 N -0.357 5.357 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.228 0.772 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.309 -11.731 -10.284 16.479 hybrid contribution 0.589 0.127 1.066 1.225 sum -4.719 -11.603 -9.218 15.552 Atomic orbital electron populations 1.21778 0.94156 1.01129 1.01623 1.21771 0.95732 0.96312 0.95228 1.21677 1.01179 0.94111 1.01775 1.22482 1.00628 0.80764 0.96810 1.48975 1.61112 1.04978 1.18825 1.19299 0.79409 0.83150 0.84459 1.90682 1.43515 1.86719 1.21613 1.23201 0.95094 0.96472 1.02094 1.21198 0.89546 0.71939 0.93274 1.93081 1.83208 1.62932 1.77595 1.92943 1.93888 1.40707 1.90123 1.22727 1.00415 0.93038 0.97413 1.23109 1.03388 0.96400 0.95605 1.22971 1.01843 0.97122 0.93717 1.23933 0.99568 1.01206 0.80558 1.21134 0.92633 0.89633 0.90336 0.92004 1.42691 1.54207 1.32397 1.06399 1.19248 1.23538 1.09817 0.85067 0.91173 1.24721 0.99921 0.97673 0.98110 1.69647 1.34613 1.18252 1.35276 0.86223 0.77890 0.77013 0.85242 1.21653 1.21774 1.20739 0.92122 0.93074 0.93205 0.91985 0.93684 0.90824 0.90496 0.91100 0.86894 0.88320 0.90389 0.88512 0.90666 0.89578 0.88647 0.90097 0.90636 0.77154 0.93398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.24 37.16 0.31 -1.52 16 2 C -0.09 -1.39 1.03 -153.11 -0.16 -1.55 16 3 C -0.13 -2.08 7.12 37.16 0.26 -1.82 16 4 C 0.12 1.75 6.16 -2.41 -0.01 1.73 16 5 N -0.61 -9.43 3.31 -169.30 -0.56 -9.99 16 6 C 0.55 8.37 6.77 -10.99 -0.07 8.30 16 7 O -0.55 -9.63 16.61 5.55 0.09 -9.53 16 8 C -0.16 -2.05 0.72 -154.84 -0.11 -2.16 16 9 C 0.29 3.56 4.75 37.16 0.18 3.73 16 10 F -0.19 -2.76 14.37 2.25 0.03 -2.73 16 11 F -0.20 -2.31 14.56 2.25 0.03 -2.28 16 12 C -0.10 -1.03 6.68 -25.92 -0.17 -1.21 16 13 C -0.15 -1.44 7.56 -25.92 -0.20 -1.63 16 14 C -0.12 -1.40 5.19 -25.92 -0.13 -1.53 16 15 C 0.07 1.23 4.73 -2.41 -0.01 1.22 16 16 C 0.18 3.23 3.35 -66.53 -0.22 3.01 16 17 H 0.06 1.18 7.66 -51.93 -0.40 0.78 16 18 N -0.71 -16.39 4.57 -52.07 -0.24 -16.63 16 19 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 20 H 0.07 1.78 7.83 -52.48 -0.41 1.36 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 23 Si 0.91 21.60 29.55 -169.99 -5.02 16.58 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.07 6.93 -51.93 -0.36 0.71 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.34 7.76 -51.93 -0.40 0.94 16 33 H 0.08 1.14 7.57 -51.93 -0.39 0.75 16 34 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.09 7.87 -51.93 -0.41 0.68 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.10 0.94 6.39 -51.93 -0.33 0.61 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.08 7.16 -51.93 -0.37 0.71 16 41 H 0.10 1.13 8.09 -51.92 -0.42 0.71 16 42 H 0.08 1.55 7.45 -51.92 -0.39 1.16 16 43 H 0.08 1.24 4.69 -51.93 -0.24 0.99 16 44 H 0.39 9.45 5.11 -40.82 -0.21 9.24 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -29.31 352.69 -7.05 -36.37 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.83 Total: 9.18 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -0.60 Total: -0.26 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: -0.07 Total: -52.64 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.07 Total: -5.01 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.31 -7.05 -36.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996182987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.249 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds