Wall clock time and date at job start Tue Mar 31 2020 11:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 F 1.39890 * 109.47231 * 2 1 4 4 F 1.39899 * 109.46940 * 239.99855 * 2 1 3 5 5 C 1.53002 * 109.46834 * 120.00144 * 2 1 3 6 6 C 1.50699 * 115.54970 * 294.97787 * 5 2 1 7 7 O 1.21283 * 119.99775 * 93.58698 * 6 5 2 8 8 N 1.34770 * 119.99998 * 273.58182 * 6 5 2 9 9 C 1.48148 * 127.84222 * 354.95371 * 8 6 5 10 10 C 1.54381 * 104.62316 * 140.38795 * 9 8 6 11 11 H 1.08997 * 110.34481 * 264.99723 * 10 9 8 12 12 N 1.46498 * 110.34600 * 142.73666 * 10 9 8 13 13 C 1.36930 * 120.00152 * 89.46483 * 12 10 9 14 14 H 1.08001 * 119.99832 * 359.97438 * 13 12 10 15 15 C 1.38816 * 120.00313 * 180.02562 * 13 12 10 16 16 N 1.31614 * 119.99820 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00031 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47354 * 89.99542 * 17 15 13 19 19 H 1.48496 * 109.46863 * 209.99566 * 17 15 13 20 20 H 1.48501 * 109.47182 * 329.99350 * 17 15 13 21 21 C 1.54293 * 104.95797 * 23.86832 * 10 9 8 22 22 C 1.52999 * 110.34460 * 118.86900 * 21 10 9 23 23 C 1.52998 * 110.33939 * 241.12918 * 21 10 9 24 24 C 1.48154 * 127.83695 * 174.92251 * 8 6 5 25 25 C 1.52999 * 117.51937 * 80.68421 * 5 2 1 26 26 C 1.53000 * 60.00262 * 107.47716 * 25 5 2 27 27 H 1.09004 * 109.46637 * 305.27157 * 1 2 3 28 28 H 1.08997 * 109.47017 * 65.26821 * 1 2 3 29 29 H 1.08993 * 109.47097 * 185.27311 * 1 2 3 30 30 H 1.08996 * 110.40458 * 21.60347 * 9 8 6 31 31 H 1.09004 * 110.40411 * 259.17533 * 9 8 6 32 32 H 0.97005 * 120.00151 * 269.46543 * 12 10 9 33 33 H 0.97003 * 120.00034 * 180.02562 * 16 15 13 34 34 H 1.09009 * 109.47047 * 59.99718 * 22 21 10 35 35 H 1.09002 * 109.47395 * 179.97438 * 22 21 10 36 36 H 1.09000 * 109.47554 * 300.00608 * 22 21 10 37 37 H 1.08995 * 109.47702 * 59.99882 * 23 21 10 38 38 H 1.09011 * 109.46864 * 180.02562 * 23 21 10 39 39 H 1.09000 * 109.47348 * 299.99743 * 23 21 10 40 40 H 1.08996 * 110.40798 * 100.82570 * 24 8 6 41 41 H 1.08994 * 110.40822 * 338.38840 * 24 8 6 42 42 H 1.09000 * 117.50002 * 214.97082 * 25 5 2 43 43 H 1.09003 * 117.49753 * 359.97438 * 25 5 2 44 44 H 1.09003 * 117.49711 * 252.51259 * 26 25 5 45 45 H 1.08993 * 117.49743 * 107.48978 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3189 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0400 -0.7213 1.2493 6 6 1.7153 -0.0561 2.5619 7 8 0.7198 -0.3783 3.1751 8 7 2.5312 0.8968 3.0544 9 6 3.8328 1.3491 2.5102 10 6 3.8242 2.8810 2.7017 11 1 3.4797 3.3746 1.7930 12 7 5.1613 3.3564 3.0652 13 6 6.0505 3.7131 2.0869 14 1 5.7662 3.6437 1.0473 15 6 7.3178 4.1631 2.4313 16 7 7.6645 4.2473 3.6982 17 14 8.5306 4.6505 1.0967 18 1 8.3729 6.0944 0.7878 19 1 9.9150 4.3935 1.5682 20 1 8.2679 3.8509 -0.1268 21 6 2.8331 3.1323 3.8573 22 6 3.5464 3.8019 5.0336 23 6 1.6664 3.9983 3.3784 24 6 2.3298 1.7302 4.2627 25 6 2.0685 -2.2508 1.2203 26 6 3.3759 -1.4597 1.1428 27 1 -0.3633 0.5935 0.8391 28 1 -0.3633 0.4299 -0.9334 29 1 -0.3633 -1.0233 0.0944 30 1 3.9099 1.0989 1.4521 31 1 4.6546 0.9009 3.0685 32 1 5.4169 3.4184 3.9989 33 1 8.5499 4.5621 3.9389 34 1 3.9644 4.7553 4.7100 35 1 2.8341 3.9731 5.8407 36 1 4.3490 3.1550 5.3879 37 1 1.1452 3.4898 2.5674 38 1 0.9760 4.1672 4.2049 39 1 2.0468 4.9556 3.0218 40 1 2.9169 1.3415 5.0947 41 1 1.2730 1.7675 4.5267 42 1 1.8524 -2.7759 2.1507 43 1 1.7235 -2.7435 0.3113 44 1 3.8911 -1.4320 0.1827 45 1 4.0198 -1.4644 2.0222 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996310405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:10 Heat of formation + Delta-G solvation = -88.231831 kcal Electronic energy + Delta-G solvation = -28993.995601 eV Core-core repulsion = 24876.738993 eV Total energy + Delta-G solvation = -4117.256607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.06926 -47.05129 -40.28155 -38.47964 -36.53302 -34.13860 -33.09585 -31.39541 -30.81035 -27.68052 -27.04425 -26.71043 -24.72387 -23.88645 -22.77265 -22.27448 -21.33582 -19.04648 -18.53485 -17.54544 -17.44430 -17.22980 -16.43349 -16.10731 -15.48354 -15.31253 -14.58812 -14.32147 -14.03431 -13.88962 -13.78175 -13.73454 -13.39533 -13.26289 -13.13728 -12.76585 -12.65789 -12.51419 -12.36427 -11.95099 -11.85275 -11.73888 -11.69182 -11.57257 -11.24286 -10.96109 -10.93840 -10.80169 -10.63182 -10.49166 -10.38532 -10.18360 -9.86629 -9.80150 -9.62381 -9.02232 -8.45915 -7.05331 -5.84137 -3.13535 2.46802 2.89697 3.29912 3.40062 3.46422 3.47116 3.58594 3.96812 4.18979 4.37094 4.42461 4.55194 4.74931 4.80145 4.95641 5.10755 5.20186 5.27020 5.37137 5.41091 5.49028 5.54173 5.64674 5.66160 5.70981 5.72359 5.80670 5.84176 5.85438 5.99211 6.03908 6.18830 6.27600 6.31232 6.31907 6.43352 6.53820 6.61040 6.84459 6.95744 7.66357 7.74021 8.19637 8.34845 9.46789 10.01300 10.36551 11.38093 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.004930 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.429217 B = 5677.932860 C = 6682.279348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.335 3.665 3 F -0.186 7.186 4 F -0.195 7.195 5 C -0.212 4.212 6 C 0.575 3.425 7 O -0.544 6.544 8 N -0.604 5.604 9 C 0.076 3.924 10 C 0.178 3.822 11 H 0.065 0.935 12 N -0.715 5.715 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.008 4.008 16 N -0.931 5.931 17 Si 0.905 3.095 18 H -0.289 1.289 19 H -0.292 1.292 20 H -0.281 1.281 21 C -0.088 4.088 22 C -0.129 4.129 23 C -0.130 4.130 24 C 0.117 3.883 25 C -0.127 4.127 26 C -0.146 4.146 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.390 0.610 33 H 0.256 0.744 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.327 -9.416 -3.503 16.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.298 3.702 3 F -0.167 7.167 4 F -0.176 7.176 5 C -0.216 4.216 6 C 0.362 3.638 7 O -0.422 6.422 8 N -0.336 5.336 9 C -0.050 4.050 10 C 0.065 3.935 11 H 0.083 0.917 12 N -0.358 5.358 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.736 3.264 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 C -0.090 4.090 22 C -0.187 4.187 23 C -0.188 4.188 24 C -0.005 4.005 25 C -0.164 4.164 26 C -0.183 4.183 27 H 0.109 0.891 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.228 0.772 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -13.758 -9.571 -3.384 17.098 hybrid contribution 1.088 0.375 -0.609 1.302 sum -12.669 -9.196 -3.993 16.156 Atomic orbital electron populations 1.22698 0.90728 1.05816 1.05217 1.19975 0.93651 0.75402 0.81122 1.93083 1.90444 1.36523 1.96617 1.92999 1.90684 1.81099 1.52779 1.22274 1.07587 0.97330 0.94447 1.18413 0.82300 0.78711 0.84392 1.90680 1.27565 1.63441 1.60490 1.48911 1.21858 1.35332 1.27510 1.23752 0.82839 0.99026 0.99346 1.21092 0.86676 0.90503 0.95207 0.91686 1.42706 1.09002 1.76822 1.07239 1.19276 0.93195 1.36390 0.88713 0.91111 1.24719 0.97700 1.01979 0.96074 1.69648 1.20601 1.52819 1.14830 0.86220 0.80785 0.78394 0.80975 1.21676 1.21789 1.20697 1.21780 0.96235 0.93557 0.97451 1.21680 0.99340 1.02001 0.95703 1.21785 0.96832 0.99705 1.00430 1.22488 1.01420 0.89541 0.87041 1.23054 0.99962 0.88576 1.04818 1.23232 0.89736 0.99994 1.05335 0.89081 0.89893 0.89065 0.90797 0.90625 0.77190 0.93423 0.90798 0.93661 0.92006 0.93088 0.93097 0.92069 0.91092 0.90519 0.87189 0.87130 0.86850 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.18 37.16 0.34 -1.66 16 2 C 0.34 4.37 2.08 -26.73 -0.06 4.31 16 3 F -0.19 -2.88 15.74 2.25 0.04 -2.85 16 4 F -0.19 -2.50 15.65 2.25 0.04 -2.46 16 5 C -0.21 -2.79 0.91 -155.66 -0.14 -2.93 16 6 C 0.58 9.00 6.35 -10.99 -0.07 8.93 16 7 O -0.54 -9.63 17.37 5.55 0.10 -9.54 16 8 N -0.60 -9.59 3.32 -169.31 -0.56 -10.15 16 9 C 0.08 1.31 5.95 -2.41 -0.01 1.30 16 10 C 0.18 3.36 3.35 -66.53 -0.22 3.13 16 11 H 0.07 1.31 7.66 -51.93 -0.40 0.91 16 12 N -0.71 -16.52 4.57 -52.07 -0.24 -16.76 16 13 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 17 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.09 -1.41 1.03 -153.11 -0.16 -1.57 16 22 C -0.13 -2.09 7.12 37.16 0.26 -1.82 16 23 C -0.13 -1.88 8.24 37.16 0.31 -1.57 16 24 C 0.12 1.79 6.12 -2.40 -0.01 1.77 16 25 C -0.13 -1.33 9.67 -26.73 -0.26 -1.59 16 26 C -0.15 -1.70 8.28 -26.73 -0.22 -1.92 16 27 H 0.09 1.06 7.87 -51.93 -0.41 0.65 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.28 5.75 -51.93 -0.30 0.98 16 31 H 0.08 1.39 8.06 -51.93 -0.42 0.97 16 32 H 0.39 9.43 5.11 -40.82 -0.21 9.22 16 33 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 34 H 0.07 1.35 7.76 -51.92 -0.40 0.95 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.06 6.93 -51.93 -0.36 0.70 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.05 7.83 -51.93 -0.41 0.65 16 41 H 0.08 1.14 7.64 -51.93 -0.40 0.74 16 42 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 0.96 7.93 -51.93 -0.41 0.55 16 44 H 0.11 1.27 7.64 -51.93 -0.40 0.87 16 45 H 0.11 1.31 8.06 -51.93 -0.42 0.89 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -29.56 365.69 -6.94 -36.50 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -7.03 Total: 9.60 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.49 Total: -0.49 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.07 Total: -52.93 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.10 Total: -9.54 kcal Atomic # 9 Polarization: -5.38 SS G_CDS: 0.07 Total: -5.31 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.56 -6.94 -36.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996310405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.735 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds