Wall clock time and date at job start Tue Mar 31 2020 11:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 F 1.39902 * 109.47031 * 2 1 4 4 F 1.39900 * 109.47067 * 119.99869 * 2 1 3 5 5 C 1.52994 * 109.47023 * 239.99918 * 2 1 3 6 6 C 1.50702 * 115.55144 * 54.43154 * 5 2 1 7 7 O 1.21273 * 120.00208 * 261.58690 * 6 5 2 8 8 N 1.34775 * 119.99629 * 81.58474 * 6 5 2 9 9 C 1.47024 * 125.65291 * 354.28030 * 8 6 5 10 10 C 1.54318 * 107.27359 * 181.01985 * 9 8 6 11 11 H 1.09004 * 110.72385 * 140.73214 * 10 9 8 12 12 N 1.46504 * 110.72128 * 263.82623 * 10 9 8 13 13 C 1.36930 * 120.00246 * 273.54880 * 12 10 9 14 14 H 1.08002 * 119.99678 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00215 * 179.97438 * 13 12 10 16 16 N 1.31617 * 120.00201 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99796 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47681 * 90.00031 * 17 15 13 19 19 H 1.48501 * 109.47148 * 209.99883 * 17 15 13 20 20 H 1.48500 * 109.47314 * 329.99663 * 17 15 13 21 21 C 1.55157 * 102.94344 * 22.19009 * 10 9 8 22 22 C 1.52999 * 111.00226 * 82.57113 * 21 10 9 23 23 C 1.53004 * 111.00611 * 206.38548 * 21 10 9 24 24 C 1.47429 * 125.64754 * 173.96367 * 8 6 5 25 25 C 1.53000 * 117.50075 * 268.76227 * 5 2 1 26 26 C 1.53004 * 117.49965 * 200.10274 * 5 2 1 27 27 H 1.08996 * 109.46787 * 54.62904 * 1 2 3 28 28 H 1.09001 * 109.46896 * 294.63367 * 1 2 3 29 29 H 1.08998 * 109.46838 * 174.63339 * 1 2 3 30 30 H 1.08998 * 109.88006 * 300.44025 * 9 8 6 31 31 H 1.09000 * 109.88052 * 61.44648 * 9 8 6 32 32 H 0.97006 * 119.99434 * 93.54622 * 12 10 9 33 33 H 0.96997 * 120.00219 * 180.02562 * 16 15 13 34 34 H 1.08999 * 109.47119 * 60.00325 * 22 21 10 35 35 H 1.09006 * 109.47364 * 180.02562 * 22 21 10 36 36 H 1.08994 * 109.47529 * 300.00194 * 22 21 10 37 37 H 1.08998 * 109.47141 * 59.99961 * 23 21 10 38 38 H 1.09001 * 109.46723 * 180.02562 * 23 21 10 39 39 H 1.08994 * 109.46775 * 299.99901 * 23 21 10 40 40 H 1.08992 * 110.36980 * 274.75146 * 24 8 6 41 41 H 1.09007 * 110.36280 * 37.07710 * 24 8 6 42 42 H 1.09002 * 117.49771 * 0.02562 * 25 5 2 43 43 H 1.09002 * 117.50225 * 145.01975 * 25 5 2 44 44 H 1.08999 * 117.50082 * 214.97964 * 26 5 2 45 45 H 1.09007 * 117.49562 * 0.02562 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 9 1.9964 1.3190 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2492 6 6 1.5111 -0.2017 -2.5612 7 8 0.5840 -0.7625 -3.1060 8 7 2.0683 0.8862 -3.1290 9 6 3.1114 1.7284 -2.5257 10 6 3.4179 2.8642 -3.5244 11 1 3.5776 3.8064 -3.0000 12 7 4.5811 2.5290 -4.3497 13 6 5.8431 2.8169 -3.9032 14 1 5.9810 3.2915 -2.9429 15 6 6.9453 2.4989 -4.6849 16 7 8.1583 2.7761 -4.2560 17 14 6.7066 1.6787 -6.3461 18 1 6.5731 2.7190 -7.3974 19 1 7.8796 0.8190 -6.6468 20 1 5.4776 0.8458 -6.3150 21 6 2.1306 2.9238 -4.3886 22 6 1.0433 3.7482 -3.6965 23 6 2.4311 3.4782 -5.7827 24 6 1.7374 1.4250 -4.4608 25 6 2.3032 -2.2244 -1.1392 26 6 3.4771 -1.2459 -1.2249 27 1 -0.3633 0.5949 -0.8380 28 1 -0.3633 0.4284 0.9342 29 1 -0.3633 -1.0232 -0.0961 30 1 2.7518 2.1479 -1.5862 31 1 4.0090 1.1362 -2.3475 32 1 4.4571 2.1030 -5.2123 33 1 8.9284 2.5541 -4.8024 34 1 1.4041 4.7642 -3.5365 35 1 0.1519 3.7733 -4.3235 36 1 0.7988 3.2940 -2.7363 37 1 3.1568 2.8352 -6.2807 38 1 1.5115 3.5095 -6.3671 39 1 2.8388 4.4850 -5.6931 40 1 2.3164 0.9152 -5.2308 41 1 0.6701 1.3223 -4.6571 42 1 2.1125 -2.6996 -0.1769 43 1 2.0940 -2.8375 -2.0158 44 1 4.0398 -1.2155 -2.1579 45 1 4.0591 -1.0775 -0.3187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996310407.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:14 Heat of formation + Delta-G solvation = -88.648411 kcal Electronic energy + Delta-G solvation = -29156.124105 eV Core-core repulsion = 25038.849434 eV Total energy + Delta-G solvation = -4117.274671 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.14055 -47.13668 -40.37553 -38.56220 -36.46834 -34.09104 -33.23763 -31.49038 -31.11852 -28.30208 -27.06786 -26.85757 -24.75080 -23.71320 -22.68714 -22.23089 -21.22815 -19.16607 -18.80621 -17.70488 -17.63101 -17.45680 -16.45848 -16.14544 -15.56167 -15.20607 -14.80285 -14.48801 -14.32548 -13.90726 -13.83337 -13.65430 -13.46989 -13.33877 -12.87914 -12.81127 -12.68710 -12.52842 -12.42160 -12.17442 -12.06752 -11.82249 -11.76528 -11.67573 -11.63557 -11.26995 -11.04404 -10.78676 -10.67831 -10.60235 -10.41201 -10.31594 -9.95583 -9.79018 -9.63290 -9.04923 -8.36508 -7.38850 -5.85762 -3.22527 2.48590 2.92961 3.29832 3.32280 3.34530 3.39140 3.56271 3.95342 4.13661 4.39310 4.44745 4.50361 4.69803 4.75201 4.85876 4.94546 5.03603 5.26176 5.27083 5.41597 5.46251 5.47822 5.51218 5.54129 5.66059 5.68334 5.74184 5.77882 5.82038 5.93989 5.95027 6.06182 6.08206 6.13671 6.20906 6.29892 6.44783 6.50484 6.64350 6.67579 7.68915 7.89543 8.19993 8.33025 9.10194 9.82548 10.01370 11.32097 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.014360 B = 0.005207 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.417656 B = 5376.093540 C = 6073.465290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.336 3.664 3 F -0.187 7.187 4 F -0.194 7.194 5 C -0.215 4.215 6 C 0.569 3.431 7 O -0.543 6.543 8 N -0.594 5.594 9 C 0.060 3.940 10 C 0.185 3.815 11 H 0.079 0.921 12 N -0.737 5.737 13 C -0.248 4.248 14 H 0.093 0.907 15 C 0.011 3.989 16 N -0.929 5.929 17 Si 0.878 3.122 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.279 1.279 21 C -0.091 4.091 22 C -0.129 4.129 23 C -0.127 4.127 24 C 0.118 3.882 25 C -0.127 4.127 26 C -0.141 4.141 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.363 0.637 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.957 -4.503 6.082 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.299 3.701 3 F -0.168 7.168 4 F -0.175 7.175 5 C -0.219 4.219 6 C 0.356 3.644 7 O -0.421 6.421 8 N -0.326 5.326 9 C -0.065 4.065 10 C 0.073 3.927 11 H 0.097 0.903 12 N -0.380 5.380 13 C -0.377 4.377 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.576 5.576 17 Si 0.708 3.292 18 H -0.209 1.209 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.093 4.093 22 C -0.187 4.187 23 C -0.185 4.185 24 C -0.004 4.004 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.197 0.803 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.206 -4.743 5.973 17.911 hybrid contribution 0.271 -0.583 -1.055 1.236 sum -15.935 -5.326 4.918 17.506 Atomic orbital electron populations 1.22707 0.90786 1.05944 1.05072 1.20021 0.93576 0.75164 0.81309 1.92981 1.90505 1.36896 1.96380 1.93000 1.90675 1.81048 1.52757 1.22269 1.04865 1.00544 0.94186 1.18485 0.82087 0.79518 0.84317 1.90677 1.28368 1.58470 1.64612 1.48352 1.39380 1.26498 1.18327 1.23551 0.90324 0.94226 0.98425 1.21208 0.85830 0.95201 0.90444 0.90293 1.42819 1.02095 1.73010 1.20067 1.19046 0.81217 1.33717 1.03735 0.88952 1.24632 0.95093 1.00818 0.97996 1.69686 0.97175 1.52614 1.38155 0.86663 0.77001 0.79649 0.85839 1.20882 1.21682 1.20482 1.22085 0.96542 0.93440 0.97210 1.21664 0.97227 0.99646 1.00120 1.21598 1.00634 1.01937 0.94302 1.22369 1.00613 0.93187 0.84260 1.23082 1.00318 0.88235 1.04778 1.23208 0.88809 1.00241 1.05530 0.89340 0.89834 0.88894 0.90419 0.90173 0.80288 0.92955 0.91999 0.92727 0.92637 0.92311 0.93151 0.91518 0.91522 0.90781 0.87042 0.87196 0.86926 0.86949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 9.02 37.16 0.34 -1.63 16 2 C 0.34 4.25 2.10 -26.73 -0.06 4.20 16 3 F -0.19 -2.64 13.94 2.25 0.03 -2.61 16 4 F -0.19 -2.44 15.65 2.25 0.04 -2.40 16 5 C -0.21 -2.90 1.12 -155.66 -0.17 -3.08 16 6 C 0.57 9.06 6.00 -10.99 -0.07 8.99 16 7 O -0.54 -9.76 17.24 5.56 0.10 -9.66 16 8 N -0.59 -9.48 3.31 -170.38 -0.56 -10.05 16 9 C 0.06 1.00 5.44 -3.07 -0.02 0.98 16 10 C 0.18 3.24 2.86 -66.10 -0.19 3.05 16 11 H 0.08 1.41 8.03 -51.93 -0.42 1.00 16 12 N -0.74 -15.93 4.42 -51.65 -0.23 -16.16 16 13 C -0.25 -6.49 10.46 -15.06 -0.16 -6.64 16 14 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 15 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 16 N -0.93 -28.06 13.97 55.49 0.78 -27.28 16 17 Si 0.88 21.28 27.74 -169.99 -4.71 16.56 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 20 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 21 C -0.09 -1.32 0.83 -152.24 -0.13 -1.45 16 22 C -0.13 -1.57 8.59 37.16 0.32 -1.25 16 23 C -0.13 -1.80 8.22 37.16 0.31 -1.49 16 24 C 0.12 1.81 5.85 -2.41 -0.01 1.80 16 25 C -0.13 -1.46 9.59 -26.69 -0.26 -1.72 16 26 C -0.14 -1.82 8.68 -26.69 -0.23 -2.06 16 27 H 0.09 1.00 7.63 -51.93 -0.40 0.60 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.08 1.23 5.31 -51.93 -0.28 0.96 16 31 H 0.08 1.51 7.16 -51.93 -0.37 1.14 16 32 H 0.36 7.86 3.96 -40.82 -0.16 7.70 16 33 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 37 H 0.06 0.93 6.38 -51.93 -0.33 0.60 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 1.09 7.99 -51.93 -0.41 0.68 16 41 H 0.07 1.09 7.90 -51.93 -0.41 0.67 16 42 H 0.11 1.08 7.62 -51.93 -0.40 0.68 16 43 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.11 1.60 8.07 -51.93 -0.42 1.18 16 45 H 0.11 1.38 7.95 -51.93 -0.41 0.97 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -30.36 360.53 -6.53 -36.89 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -6.97 Total: 9.37 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: -0.42 Total: -0.09 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -0.02 Total: -53.49 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.10 Total: -9.66 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.07 Total: -5.02 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.36 -6.53 -36.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996310407.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.763 kcal (2) G-P(sol) polarization free energy of solvation -30.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds