Wall clock time and date at job start Tue Mar 31 2020 11:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 112.85144 * 2 1 4 4 O 1.21284 * 120.00204 * 245.95244 * 3 2 1 5 5 N 1.34778 * 119.99839 * 65.94726 * 3 2 1 6 6 C 1.47024 * 125.65032 * 5.08101 * 5 3 2 7 7 C 1.54319 * 107.27251 * 181.01967 * 6 5 3 8 8 H 1.08997 * 110.72069 * 263.82947 * 7 6 5 9 9 N 1.46503 * 110.71977 * 140.56208 * 7 6 5 10 10 C 1.36930 * 120.00382 * 86.45021 * 9 7 6 11 11 H 1.07995 * 119.99984 * 0.02562 * 10 9 7 12 12 C 1.38813 * 119.99789 * 180.02562 * 10 9 7 13 13 N 1.31624 * 119.99469 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 120.00341 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46800 * 90.00231 * 14 12 10 16 16 H 1.48502 * 109.47268 * 210.00145 * 14 12 10 17 17 H 1.48504 * 109.47241 * 330.00491 * 14 12 10 18 18 C 1.55154 * 102.94152 * 22.19554 * 7 6 5 19 19 C 1.53002 * 111.00639 * 82.57303 * 18 7 6 20 20 C 1.53006 * 111.00299 * 206.38420 * 18 7 6 21 21 C 1.47421 * 125.64742 * 184.77359 * 5 3 2 22 22 C 1.53787 * 113.61323 * 228.80542 * 2 1 3 23 23 C 1.53958 * 87.01846 * 220.04656 * 22 2 1 24 24 F 1.39895 * 113.54035 * 270.81289 * 23 22 2 25 25 F 1.39896 * 113.74079 * 139.93830 * 23 22 2 26 26 C 1.53776 * 113.61388 * 131.19970 * 2 1 3 27 27 H 1.09003 * 109.47109 * 53.79597 * 1 2 3 28 28 H 1.09001 * 109.47246 * 293.79888 * 1 2 3 29 29 H 1.09003 * 109.47245 * 173.79718 * 1 2 3 30 30 H 1.09000 * 109.88108 * 300.44234 * 6 5 3 31 31 H 1.09005 * 109.88017 * 61.60244 * 6 5 3 32 32 H 0.97010 * 119.99203 * 266.45578 * 9 7 6 33 33 H 0.97003 * 119.99426 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.46728 * 59.99300 * 19 18 7 35 35 H 1.08991 * 109.47146 * 179.97438 * 19 18 7 36 36 H 1.09004 * 109.46807 * 300.00123 * 19 18 7 37 37 H 1.09002 * 109.47016 * 59.99689 * 20 18 7 38 38 H 1.08995 * 109.46807 * 179.97438 * 20 18 7 39 39 H 1.08997 * 109.46672 * 300.00123 * 20 18 7 40 40 H 1.09009 * 110.36759 * 274.74747 * 21 5 3 41 41 H 1.09002 * 110.37085 * 37.07020 * 21 5 3 42 42 H 1.09005 * 113.61400 * 334.56663 * 22 2 1 43 43 H 1.08998 * 113.61110 * 105.47315 * 22 2 1 44 44 H 1.09006 * 113.61058 * 254.52954 * 26 2 1 45 45 H 1.09001 * 113.62026 * 25.42933 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.7451 1.7813 -0.9592 5 7 1.9385 2.1944 1.0659 6 6 1.2915 1.8136 2.3300 7 6 1.2940 3.0602 3.2397 8 1 2.1433 3.0376 3.9225 9 7 0.0343 3.1638 3.9805 10 6 -0.1143 2.5083 5.1735 11 1 0.6972 1.9154 5.5686 12 6 -1.3082 2.6061 5.8751 13 7 -1.4508 1.9765 7.0221 14 14 -2.7116 3.6324 5.1920 15 1 -3.5740 2.7820 4.3328 16 1 -3.5163 4.1795 6.3138 17 1 -2.1601 4.7515 4.3865 18 6 1.4337 4.2283 2.2281 19 6 0.0762 4.5988 1.6272 20 6 2.0908 5.4451 2.8828 21 6 2.3677 3.6017 1.1597 22 6 2.1460 -0.9281 -1.0603 23 6 3.1924 -1.3136 0.0012 24 9 4.3202 -0.4859 0.0005 25 9 3.5171 -2.6744 0.0038 26 6 2.1460 -0.9281 1.0602 27 1 -0.3633 0.6070 -0.8293 28 1 -0.3634 0.4147 0.9403 29 1 -0.3634 -1.0217 -0.1110 30 1 0.2665 1.4949 2.1405 31 1 1.8508 1.0073 2.8045 32 1 -0.6945 3.6967 3.6257 33 1 -2.2852 2.0445 7.5121 34 1 -0.6021 4.9052 2.4235 35 1 0.2030 5.4202 0.9222 36 1 -0.3394 3.7349 1.1084 37 1 3.0834 5.1729 3.2416 38 1 2.1768 6.2488 2.1516 39 1 1.4805 5.7802 3.7215 40 1 3.4079 3.6605 1.4803 41 1 2.2365 4.1030 0.2007 42 1 1.4945 -1.7523 -1.3507 43 1 2.5650 -0.3969 -1.9150 44 1 2.5650 -0.3970 1.9149 45 1 1.4945 -1.7523 1.3506 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996499175.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:25 Heat of formation + Delta-G solvation = -92.389382 kcal Electronic energy + Delta-G solvation = -28752.143362 eV Core-core repulsion = 24634.706470 eV Total energy + Delta-G solvation = -4117.436892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.86354 -47.19269 -40.75255 -38.85285 -36.93022 -34.34627 -33.28071 -31.21533 -29.84477 -28.07800 -27.23607 -26.94791 -26.18725 -24.08650 -23.34075 -21.79850 -20.75597 -19.15908 -18.40432 -17.72020 -17.54530 -16.71241 -16.68721 -16.19286 -15.91937 -15.51800 -14.74727 -14.43714 -14.07816 -14.01415 -13.94289 -13.61561 -13.46211 -13.39730 -13.24628 -12.87013 -12.85422 -12.71104 -12.61482 -12.37131 -12.17983 -12.01971 -11.74926 -11.50008 -11.41236 -11.12486 -11.09161 -10.96994 -10.71508 -10.61953 -10.51156 -10.37592 -10.03844 -9.75895 -9.66552 -9.08680 -8.44450 -7.46629 -5.91147 -3.29028 2.60451 2.98033 3.25174 3.27637 3.35307 3.35537 3.61105 4.02200 4.09586 4.18803 4.45120 4.51273 4.79676 4.89047 4.93745 5.06707 5.16010 5.19887 5.28337 5.37275 5.38030 5.45047 5.54559 5.57177 5.62042 5.65053 5.65849 5.73651 5.82307 5.83993 5.91541 5.95543 6.07079 6.14415 6.20489 6.28777 6.41218 6.42945 6.49652 6.68404 7.63719 7.83845 8.19949 8.27667 9.04481 9.76492 9.94906 11.26496 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.004536 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.300343 B = 6171.745597 C = 7017.111522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.098 4.098 3 C 0.550 3.450 4 O -0.540 6.540 5 N -0.606 5.606 6 C 0.068 3.932 7 C 0.186 3.814 8 H 0.075 0.925 9 N -0.736 5.736 10 C -0.253 4.253 11 H 0.092 0.908 12 C 0.012 3.988 13 N -0.928 5.928 14 Si 0.878 3.122 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.276 1.276 18 C -0.089 4.089 19 C -0.135 4.135 20 C -0.130 4.130 21 C 0.119 3.881 22 C -0.143 4.143 23 C 0.252 3.748 24 F -0.173 7.173 25 F -0.191 7.191 26 C -0.155 4.155 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.366 0.634 33 H 0.261 0.739 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.155 -1.927 -14.341 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.102 4.102 3 C 0.337 3.663 4 O -0.418 6.418 5 N -0.338 5.338 6 C -0.057 4.057 7 C 0.074 3.926 8 H 0.093 0.907 9 N -0.379 5.379 10 C -0.382 4.382 11 H 0.110 0.890 12 C -0.185 4.185 13 N -0.574 5.574 14 Si 0.708 3.292 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.203 1.203 18 C -0.091 4.091 19 C -0.193 4.193 20 C -0.188 4.188 21 C -0.003 4.003 22 C -0.181 4.181 23 C 0.216 3.784 24 F -0.154 7.154 25 F -0.172 7.172 26 C -0.193 4.193 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.202 0.798 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.545 -1.907 -14.652 15.782 hybrid contribution -0.919 0.483 -0.236 1.065 sum 4.627 -1.424 -14.889 15.656 Atomic orbital electron populations 1.21731 0.90227 1.03279 1.03896 1.21642 0.98487 0.92369 0.97673 1.19338 0.79709 0.85510 0.81720 1.90680 1.41014 1.75443 1.34625 1.48356 1.58167 1.12428 1.14884 1.23462 0.97854 1.01048 0.83330 1.21179 0.90983 0.89615 0.90810 0.90749 1.42855 1.12297 1.59367 1.23394 1.19063 1.00219 1.23676 0.95288 0.89009 1.24655 0.97573 0.99672 0.96572 1.69694 1.26315 1.46320 1.15105 0.86670 0.83501 0.80628 0.78356 1.20943 1.21563 1.20253 1.22057 0.95466 0.96237 0.95329 1.21693 0.96089 1.01063 1.00434 1.21660 1.00516 0.96074 1.00546 1.22349 0.97805 0.80816 0.99352 1.24114 0.96002 0.99769 0.98247 1.22114 0.82628 0.72676 1.01011 1.93058 1.54193 1.70933 1.97188 1.93000 1.94302 1.32653 1.97255 1.24327 0.96464 1.00658 0.97878 0.91602 0.90291 0.90899 0.90301 0.91691 0.79757 0.92881 0.91729 0.92785 0.92539 0.92423 0.92932 0.91425 0.91331 0.90764 0.86312 0.87484 0.87976 0.85727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.98 37.16 0.33 -1.04 16 2 C -0.10 -1.17 0.79 -154.85 -0.12 -1.29 16 3 C 0.55 8.22 5.90 -10.99 -0.06 8.16 16 4 O -0.54 -9.59 16.07 5.55 0.09 -9.50 16 5 N -0.61 -8.78 3.31 -170.38 -0.56 -9.34 16 6 C 0.07 1.04 5.28 -3.07 -0.02 1.02 16 7 C 0.19 3.11 2.85 -66.10 -0.19 2.92 16 8 H 0.07 1.30 8.02 -51.93 -0.42 0.88 16 9 N -0.74 -15.19 4.88 -51.66 -0.25 -15.45 16 10 C -0.25 -6.41 10.46 -15.06 -0.16 -6.57 16 11 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 12 C 0.01 0.32 5.50 -17.43 -0.10 0.23 16 13 N -0.93 -27.33 13.97 55.49 0.78 -26.56 16 14 Si 0.88 20.46 27.73 -169.99 -4.71 15.75 16 15 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -5.99 6.52 56.52 0.37 -5.63 16 18 C -0.09 -1.25 0.87 -152.24 -0.13 -1.38 16 19 C -0.14 -1.89 7.94 37.16 0.30 -1.59 16 20 C -0.13 -1.66 8.68 37.16 0.32 -1.33 16 21 C 0.12 1.64 5.83 -2.41 -0.01 1.63 16 22 C -0.14 -1.55 6.90 -25.82 -0.18 -1.73 16 23 C 0.25 3.17 3.27 -25.82 -0.08 3.08 16 24 F -0.17 -2.66 16.43 2.25 0.04 -2.62 16 25 F -0.19 -2.45 17.41 2.25 0.04 -2.41 16 26 C -0.16 -1.75 6.50 -25.92 -0.17 -1.92 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.90 5.65 -51.93 -0.29 0.61 16 29 H 0.07 0.59 8.05 -51.93 -0.42 0.17 16 30 H 0.08 1.24 5.68 -51.93 -0.30 0.94 16 31 H 0.06 0.97 6.13 -51.93 -0.32 0.65 16 32 H 0.37 7.51 3.12 -40.82 -0.13 7.38 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.80 7.91 -51.93 -0.41 0.39 16 37 H 0.06 0.69 8.07 -51.93 -0.42 0.27 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.91 7.99 -51.92 -0.41 0.50 16 41 H 0.07 1.02 8.01 -51.93 -0.42 0.60 16 42 H 0.12 0.95 8.04 -51.93 -0.42 0.53 16 43 H 0.11 1.28 7.34 -51.93 -0.38 0.90 16 44 H 0.10 1.24 5.96 -51.93 -0.31 0.93 16 45 H 0.12 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -30.32 353.65 -6.20 -36.52 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.67 Total: 8.09 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -0.27 Total: 0.19 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.04 Total: -51.35 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 9 Polarization: -5.11 SS G_CDS: 0.08 Total: -5.03 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.71 Total: 15.75 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.32 -6.20 -36.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996499175.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.870 kcal (2) G-P(sol) polarization free energy of solvation -30.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds