Wall clock time and date at job start Tue Mar 31 2020 10:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47264 * 269.99659 * 3 2 1 5 5 H 1.48494 * 109.47251 * 30.00031 * 3 2 1 6 6 H 1.48502 * 109.47092 * 149.99832 * 3 2 1 7 7 C 1.38816 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99394 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00041 * 359.97438 * 7 2 1 10 10 C 1.46492 * 119.99794 * 180.02562 * 9 7 2 11 11 C 1.53045 * 109.45971 * 205.00338 * 10 9 7 12 12 C 1.53195 * 109.31322 * 178.61601 * 11 10 9 13 13 N 1.46932 * 108.77411 * 54.63348 * 12 11 10 14 14 C 1.34775 * 120.62727 * 126.37066 * 13 12 11 15 15 O 1.21280 * 120.00304 * 5.03539 * 14 13 12 16 16 C 1.50701 * 119.99869 * 185.03710 * 14 13 12 17 17 H 1.09002 * 110.05580 * 36.32196 * 16 14 13 18 18 C 1.54266 * 110.03355 * 157.73525 * 16 14 13 19 19 C 1.54895 * 104.19674 * 142.89516 * 18 16 14 20 20 C 1.54891 * 102.74644 * 322.05825 * 19 18 16 21 21 C 1.53873 * 110.03311 * 274.90599 * 16 14 13 22 22 H 1.08998 * 110.03202 * 121.42772 * 21 16 14 23 23 C 1.52995 * 110.07192 * 0.02562 * 21 16 14 24 24 F 1.39904 * 109.47329 * 176.73986 * 23 21 16 25 25 F 1.39899 * 109.47349 * 296.74166 * 23 21 16 26 26 C 1.46925 * 118.73731 * 306.64426 * 13 12 11 27 27 C 1.52760 * 109.01084 * 53.31183 * 26 13 12 28 28 H 0.96997 * 120.00449 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99663 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.45311 * 324.96987 * 10 9 7 31 31 H 1.08999 * 109.49832 * 58.66318 * 11 10 9 32 32 H 1.08998 * 109.52230 * 298.58265 * 11 10 9 33 33 H 1.08998 * 109.58641 * 294.84533 * 12 11 10 34 34 H 1.08996 * 109.58522 * 174.41727 * 12 11 10 35 35 H 1.09001 * 110.48637 * 24.21701 * 18 16 14 36 36 H 1.08994 * 110.60158 * 261.63135 * 18 16 14 37 37 H 1.08997 * 110.75622 * 203.74539 * 19 18 16 38 38 H 1.08994 * 110.75495 * 80.37071 * 19 18 16 39 39 H 1.08999 * 110.48925 * 279.26350 * 20 19 18 40 40 H 1.08997 * 110.48389 * 156.61780 * 20 19 18 41 41 H 1.09005 * 109.47304 * 56.74553 * 23 21 16 42 42 H 1.09009 * 109.58297 * 173.14690 * 26 13 12 43 43 H 1.08999 * 109.58287 * 293.56491 * 26 13 12 44 44 H 1.08993 * 109.56060 * 185.55351 * 27 26 13 45 45 H 1.09002 * 109.38497 * 65.51249 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2020 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.1805 -4.7522 -0.6105 12 6 1.9621 -6.0694 -0.6405 13 7 2.4416 -6.3659 0.7164 14 6 2.1729 -7.5528 1.2955 15 8 1.6096 -8.4219 0.6644 16 6 2.5723 -7.8001 2.7274 17 1 2.4510 -6.8883 3.3122 18 6 1.7125 -8.9314 3.3281 19 6 2.6923 -9.7091 4.2415 20 6 4.0111 -9.6818 3.4297 21 6 4.0338 -8.2772 2.7921 22 1 4.6217 -7.5968 3.4081 23 6 4.6250 -8.3507 1.3828 24 9 5.9739 -8.7135 1.4613 25 9 3.9282 -9.3052 0.6340 26 6 3.2142 -5.3415 1.4321 27 6 2.4234 -4.0346 1.4368 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 2.9685 -3.5502 -0.5905 31 1 0.9015 -4.4715 -1.6260 32 1 0.2812 -4.8765 -0.0073 33 1 2.8124 -5.9745 -1.3159 34 1 1.3100 -6.8735 -0.9814 35 1 1.3300 -9.5796 2.5396 36 1 0.8909 -8.5190 3.9136 37 1 2.3513 -10.7337 4.3900 38 1 2.8163 -9.1998 5.1971 39 1 3.9999 -10.4511 2.6576 40 1 4.8682 -9.8149 4.0898 41 1 4.5382 -7.3768 0.9011 42 1 3.3881 -5.6655 2.4583 43 1 4.1687 -5.1860 0.9292 44 1 3.0290 -3.2432 1.8783 45 1 1.5126 -4.1649 2.0214 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996672254.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:55 Heat of formation + Delta-G solvation = -134.312609 kcal Electronic energy + Delta-G solvation = -28358.192309 eV Core-core repulsion = 24238.937490 eV Total energy + Delta-G solvation = -4119.254820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.09766 -47.04892 -40.67235 -38.16863 -36.95254 -34.59187 -32.26839 -31.22881 -30.53728 -29.63699 -28.93995 -25.30936 -24.78106 -23.13325 -22.93263 -21.38096 -20.99274 -19.92299 -18.72379 -17.94320 -17.50674 -17.25038 -17.04936 -16.42678 -15.79473 -15.34804 -14.90378 -14.79744 -14.46100 -14.00541 -13.89556 -13.79861 -13.56881 -13.44813 -13.36668 -13.04612 -12.90616 -12.65177 -12.46377 -12.14754 -11.77323 -11.66551 -11.53916 -11.37348 -11.16857 -11.06026 -10.94669 -10.92522 -10.80940 -10.77402 -10.51641 -10.27887 -9.89152 -9.74584 -9.66799 -8.96788 -8.58642 -7.04045 -5.82988 -3.12636 2.53219 2.94483 3.38697 3.43845 3.45727 3.50274 3.94175 3.96503 4.09242 4.38904 4.52576 4.61956 4.74718 4.84052 4.90441 5.07966 5.11236 5.17277 5.24536 5.26746 5.29795 5.31597 5.36340 5.46546 5.54273 5.59419 5.65620 5.73415 5.78324 5.86837 5.87667 5.94376 6.12939 6.16489 6.29194 6.32423 6.43998 6.54451 6.81636 6.96192 7.40441 7.62872 8.15662 8.35091 9.46449 10.03518 10.38004 11.39464 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.022790 B = 0.003181 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.318391 B = 8800.623516 C = 8932.533059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.139 4.139 12 C 0.116 3.884 13 N -0.612 5.612 14 C 0.510 3.490 15 O -0.524 6.524 16 C -0.109 4.109 17 H 0.106 0.894 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.131 4.131 22 H 0.110 0.890 23 C 0.252 3.748 24 F -0.206 7.206 25 F -0.187 7.187 26 C 0.099 3.901 27 C -0.151 4.151 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.222 -18.657 7.716 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.346 5.346 14 C 0.297 3.703 15 O -0.400 6.400 16 C -0.130 4.130 17 H 0.124 0.876 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.151 4.151 22 H 0.128 0.872 23 C 0.198 3.802 24 F -0.187 7.187 25 F -0.168 7.168 26 C -0.024 4.024 27 C -0.192 4.192 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.066 0.934 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.044 -18.982 7.329 21.880 hybrid contribution 0.256 1.213 0.022 1.240 sum 8.300 -17.769 7.351 20.944 Atomic orbital electron populations 1.69658 1.05147 1.25750 1.57409 1.24753 0.95491 0.97730 1.02844 0.86209 0.78637 0.83874 0.77559 1.21691 1.21778 1.20748 1.19223 0.90957 0.84082 1.43048 0.91165 1.42432 1.05818 0.99684 1.88483 1.20157 0.94491 0.86143 0.92338 1.22208 0.99185 0.94063 1.02302 1.21631 0.98788 0.98109 0.82104 1.48313 1.54573 1.14668 1.17062 1.20417 0.79383 0.81843 0.88678 1.90680 1.41811 1.43113 1.64347 1.21998 0.94647 1.01685 0.94700 0.87592 1.22386 0.97188 0.96075 0.99408 1.22462 0.94403 1.00792 0.98074 1.22398 0.98744 0.94730 0.99771 1.22886 0.96146 1.01020 0.95023 0.87171 1.22170 0.73923 0.91301 0.92801 1.92974 1.35037 1.93615 1.97104 1.93066 1.78490 1.67312 1.77931 1.21898 0.94789 0.89237 0.96484 1.22594 1.00094 0.94509 1.01987 0.93447 0.78240 0.93413 0.90506 0.91824 0.91611 0.89284 0.89071 0.90892 0.90830 0.91121 0.90382 0.90617 0.87250 0.90346 0.91392 0.90506 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.21 5.12 -53.38 -0.27 -17.48 16 10 C 0.18 3.24 2.73 -67.89 -0.19 3.06 16 11 C -0.14 -2.19 5.55 -26.61 -0.15 -2.33 16 12 C 0.12 1.59 6.42 -3.71 -0.02 1.57 16 13 N -0.61 -7.83 2.34 -173.02 -0.41 -8.23 16 14 C 0.51 6.74 4.45 -10.99 -0.05 6.69 16 15 O -0.52 -8.62 13.57 5.56 0.08 -8.55 16 16 C -0.11 -1.08 2.34 -90.65 -0.21 -1.30 16 17 H 0.11 0.91 6.59 -51.93 -0.34 0.56 16 18 C -0.11 -1.08 6.29 -25.07 -0.16 -1.24 16 19 C -0.12 -0.90 6.91 -24.73 -0.17 -1.07 16 20 C -0.12 -0.99 6.17 -25.07 -0.15 -1.15 16 21 C -0.13 -1.16 2.79 -89.50 -0.25 -1.41 16 22 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 23 C 0.25 2.77 4.09 37.16 0.15 2.92 16 24 F -0.21 -2.38 17.22 2.25 0.04 -2.35 16 25 F -0.19 -2.63 13.76 2.25 0.03 -2.59 16 26 C 0.10 1.13 5.08 -3.93 -0.02 1.11 16 27 C -0.15 -2.31 5.64 -26.83 -0.15 -2.47 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.38 9.88 7.80 -40.82 -0.32 9.56 16 30 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.28 7.04 -51.93 -0.37 0.92 16 35 H 0.09 1.09 6.79 -51.93 -0.35 0.74 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.77 7.13 -51.93 -0.37 0.40 16 40 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.11 1.15 5.31 -51.93 -0.28 0.88 16 42 H 0.08 0.70 5.35 -51.92 -0.28 0.43 16 43 H 0.07 0.71 7.91 -51.93 -0.41 0.30 16 44 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 349.37 15.07 5.26 5.26 Total: -1.00 -31.25 349.37 -8.09 -39.34 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -6.91 Total: 7.26 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.62 Total: -2.60 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.05 Total: -52.48 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.07 Total: -4.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.25 -8.09 -39.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996672254.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.973 kcal (2) G-P(sol) polarization free energy of solvation -31.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds