Wall clock time and date at job start Tue Mar 31 2020 10:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 120.00141 * 2 1 4 4 H 1.48498 * 109.47086 * 240.00016 * 3 2 1 5 5 H 1.48497 * 109.47239 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.46821 * 120.00342 * 3 2 1 7 7 C 1.38813 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00367 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99720 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99682 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.46027 * 204.99803 * 10 9 7 12 12 C 1.53187 * 109.31239 * 178.63135 * 11 10 9 13 13 N 1.46924 * 108.77655 * 54.63714 * 12 11 10 14 14 C 1.34779 * 120.62748 * 126.36781 * 13 12 11 15 15 O 1.21279 * 120.00100 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99517 * 179.97438 * 14 13 12 17 17 H 1.09002 * 110.01942 * 300.70308 * 16 14 13 18 18 C 1.53873 * 110.03212 * 62.09382 * 16 14 13 19 19 C 1.54269 * 106.59646 * 119.33134 * 18 16 14 20 20 C 1.54882 * 104.19831 * 23.61137 * 19 18 16 21 21 C 1.54273 * 110.07145 * 179.28254 * 16 14 13 22 22 H 1.09001 * 110.48533 * 335.76640 * 21 16 14 23 23 C 1.52997 * 110.48458 * 98.40664 * 21 16 14 24 24 F 1.39903 * 109.47272 * 299.99944 * 23 21 16 25 25 F 1.39905 * 109.47294 * 59.99844 * 23 21 16 26 26 C 1.46922 * 118.73829 * 306.64358 * 13 12 11 27 27 C 1.52758 * 109.00876 * 53.30615 * 26 13 12 28 28 H 0.97007 * 119.99787 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00196 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46064 * 324.97670 * 10 9 7 31 31 H 1.08994 * 109.49286 * 58.67847 * 11 10 9 32 32 H 1.09004 * 109.52302 * 298.60332 * 11 10 9 33 33 H 1.08999 * 109.58373 * 294.84487 * 12 11 10 34 34 H 1.08998 * 109.70287 * 174.49759 * 12 11 10 35 35 H 1.08996 * 110.03511 * 238.61372 * 18 16 14 36 36 H 1.09002 * 110.03221 * 0.02562 * 18 16 14 37 37 H 1.09000 * 110.48429 * 142.29450 * 19 18 16 38 38 H 1.09001 * 110.48672 * 264.92943 * 19 18 16 39 39 H 1.08998 * 110.75605 * 80.36842 * 20 19 18 40 40 H 1.09003 * 110.75885 * 203.74658 * 20 19 18 41 41 H 1.09000 * 109.47519 * 180.02562 * 23 21 16 42 42 H 1.08997 * 109.58617 * 173.14720 * 26 13 12 43 43 H 1.09002 * 109.58399 * 293.56725 * 26 13 12 44 44 H 1.09001 * 109.56541 * 185.54763 * 27 26 13 45 45 H 1.08999 * 109.38442 * 65.51983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 6 1.1798 -4.7520 -0.6113 12 6 1.9612 -6.0693 -0.6422 13 7 2.4414 -6.3662 0.7143 14 6 2.1728 -7.5533 1.2933 15 8 1.5295 -8.3886 0.6939 16 6 2.6729 -7.8430 2.6850 17 1 3.7603 -7.7730 2.7129 18 6 2.0550 -6.8495 3.6846 19 6 1.2506 -7.6882 4.6992 20 6 1.9033 -9.0913 4.6345 21 6 2.2224 -9.2506 3.1272 22 1 1.3312 -9.5558 2.5787 23 6 3.3512 -10.2629 2.9229 24 9 3.7029 -10.3024 1.5694 25 9 4.4626 -9.8818 3.6825 26 6 3.2147 -5.3421 1.4298 27 6 2.4240 -4.0351 1.4353 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 2.9679 -3.5502 -0.5921 31 1 0.9002 -4.4709 -1.6266 32 1 0.2808 -4.8762 -0.0075 33 1 2.8110 -5.9742 -1.3181 34 1 1.3108 -6.8744 -0.9840 35 1 2.8425 -6.2975 4.1976 36 1 1.3931 -6.1582 3.1631 37 1 1.3456 -7.2691 5.7009 38 1 0.2025 -7.7410 4.4047 39 1 2.8171 -9.1201 5.2279 40 1 1.2029 -9.8588 4.9642 41 1 3.0156 -11.2504 3.2397 42 1 3.3891 -5.6665 2.4557 43 1 4.1689 -5.1867 0.9264 44 1 3.0300 -3.2438 1.8768 45 1 1.5137 -4.1654 2.0204 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996672280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:02 Heat of formation + Delta-G solvation = -141.070151 kcal Electronic energy + Delta-G solvation = -27980.529135 eV Core-core repulsion = 23860.981286 eV Total energy + Delta-G solvation = -4119.547849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.11210 -47.07054 -40.56960 -38.04677 -36.97470 -34.52410 -32.18895 -31.19282 -30.53572 -29.62501 -28.84138 -25.35883 -24.69376 -23.00536 -22.77857 -21.21126 -20.99228 -20.04515 -18.76092 -17.92027 -17.19704 -17.09176 -16.98655 -16.59355 -16.08957 -15.01515 -14.87123 -14.71293 -14.38196 -14.01656 -13.82472 -13.74284 -13.49650 -13.47727 -13.38267 -13.14918 -12.93679 -12.63965 -12.37349 -12.13597 -11.73768 -11.61639 -11.46072 -11.31002 -11.13943 -11.02021 -10.91888 -10.86011 -10.81441 -10.77894 -10.45292 -10.27938 -9.85116 -9.69194 -9.60668 -8.92837 -8.47744 -7.00556 -5.79974 -3.09334 2.69051 3.06559 3.41143 3.45907 3.46853 3.57546 3.88258 4.00475 4.19529 4.51903 4.55284 4.59061 4.76426 4.86437 5.06944 5.08966 5.14168 5.22284 5.31496 5.33637 5.35675 5.38377 5.42429 5.51898 5.53739 5.67364 5.71572 5.77746 5.81849 5.91695 5.95908 6.01788 6.02394 6.22528 6.36495 6.37915 6.49647 6.61836 6.88024 7.01835 7.53249 7.65566 8.24884 8.38295 9.49467 10.06887 10.41634 11.42480 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023869 B = 0.003057 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.775586 B = 9157.350938 C = 9508.562493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.116 3.884 13 N -0.603 5.603 14 C 0.522 3.478 15 O -0.545 6.545 16 C -0.108 4.108 17 H 0.102 0.898 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.132 4.132 22 H 0.123 0.877 23 C 0.267 3.733 24 F -0.199 7.199 25 F -0.207 7.207 26 C 0.100 3.900 27 C -0.150 4.150 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.605 -20.454 9.376 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.007 4.007 13 N -0.336 5.336 14 C 0.310 3.690 15 O -0.423 6.423 16 C -0.129 4.129 17 H 0.120 0.880 18 C -0.155 4.155 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.152 4.152 22 H 0.141 0.859 23 C 0.213 3.787 24 F -0.180 7.180 25 F -0.188 7.188 26 C -0.023 4.023 27 C -0.191 4.191 28 H 0.066 0.934 29 H 0.217 0.783 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.100 0.900 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.413 -20.699 9.003 23.212 hybrid contribution 0.383 1.164 -0.051 1.226 sum 5.795 -19.535 8.952 22.257 Atomic orbital electron populations 1.69654 1.05133 1.25809 1.57470 1.24746 0.95490 0.97694 1.02913 0.86283 0.78537 0.83598 0.77849 1.21253 1.21710 1.21270 1.19188 0.90938 0.84111 1.42994 0.91225 1.42427 1.05788 0.99687 1.88522 1.20161 0.94454 0.86082 0.92443 1.22197 0.99148 0.94148 1.02213 1.21612 0.98716 0.97994 0.82338 1.48083 1.54004 1.14714 1.16771 1.20347 0.79574 0.81458 0.87618 1.90643 1.40683 1.46058 1.64937 1.21906 1.02330 0.95508 0.93205 0.87984 1.22265 1.00092 0.97277 0.95890 1.22326 0.99670 0.94339 0.99461 1.22542 1.01546 0.98218 0.93300 1.23151 0.99061 0.93774 0.99183 0.85940 1.21827 0.82975 1.00288 0.73576 1.93026 1.93025 1.97686 1.34298 1.92956 1.56723 1.93255 1.75887 1.21937 0.94665 0.88819 0.96896 1.22591 1.00042 0.94702 1.01778 0.93434 0.78272 0.93434 0.90585 0.91909 0.91648 0.89399 0.90263 0.90284 0.90725 0.91066 0.90244 0.90515 0.87251 0.89963 0.91589 0.90603 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.56 5.12 -53.38 -0.27 -17.84 16 10 C 0.18 3.37 2.73 -67.89 -0.19 3.18 16 11 C -0.14 -2.27 5.55 -26.61 -0.15 -2.42 16 12 C 0.12 1.70 6.43 -3.71 -0.02 1.67 16 13 N -0.60 -8.50 2.95 -173.04 -0.51 -9.01 16 14 C 0.52 7.46 6.82 -10.98 -0.07 7.39 16 15 O -0.55 -9.29 14.83 5.56 0.08 -9.20 16 16 C -0.11 -1.19 1.71 -90.65 -0.16 -1.34 16 17 H 0.10 1.10 7.15 -51.93 -0.37 0.73 16 18 C -0.12 -1.14 4.67 -25.61 -0.12 -1.26 16 19 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 20 C -0.12 -0.85 6.29 -24.74 -0.16 -1.00 16 21 C -0.13 -1.25 2.44 -88.96 -0.22 -1.47 16 22 H 0.12 1.32 6.89 -51.93 -0.36 0.97 16 23 C 0.27 2.46 4.93 37.16 0.18 2.65 16 24 F -0.20 -2.53 17.05 2.25 0.04 -2.49 16 25 F -0.21 -2.08 15.81 2.25 0.04 -2.04 16 26 C 0.10 1.29 5.58 -3.94 -0.02 1.27 16 27 C -0.15 -2.43 5.64 -26.84 -0.15 -2.58 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 30 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 31 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.33 7.00 -51.93 -0.36 0.97 16 35 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 36 H 0.08 0.91 6.74 -51.93 -0.35 0.56 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.54 7.35 -51.93 -0.38 0.16 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.89 4.30 -51.93 -0.22 0.67 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.01 7.77 -51.93 -0.40 0.61 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -31.67 354.78 -8.00 -39.67 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.93 Total: 7.80 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -1.49 Total: -2.13 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.06 Total: -53.89 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.07 Total: -4.53 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.67 -8.00 -39.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996672280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.402 kcal (2) G-P(sol) polarization free energy of solvation -31.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds