Wall clock time and date at job start Tue Mar 31 2020 10:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00277 * 2 1 4 4 H 1.48495 * 109.46982 * 270.00308 * 3 2 1 5 5 H 1.48500 * 109.46667 * 30.00010 * 3 2 1 6 6 H 1.48502 * 109.47136 * 149.99758 * 3 2 1 7 7 C 1.38816 * 120.00299 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99672 * 0.02562 * 7 2 1 9 9 N 1.36933 * 120.00318 * 179.97438 * 7 2 1 10 10 C 1.46505 * 120.00109 * 179.97438 * 9 7 2 11 11 C 1.53043 * 109.45504 * 84.97728 * 10 9 7 12 12 C 1.53169 * 109.32334 * 181.38898 * 11 10 9 13 13 N 1.46923 * 108.76516 * 305.35271 * 12 11 10 14 14 C 1.34779 * 120.63038 * 233.59132 * 13 12 11 15 15 O 1.21285 * 119.99797 * 175.44219 * 14 13 12 16 16 C 1.50703 * 120.00022 * 355.43587 * 14 13 12 17 17 H 1.09000 * 110.42901 * 38.51390 * 16 14 13 18 18 C 1.54889 * 110.48781 * 275.97383 * 16 14 13 19 19 C 1.54882 * 102.74751 * 203.37928 * 18 16 14 20 20 C 1.54268 * 104.19885 * 37.94466 * 19 18 16 21 21 C 1.53881 * 106.59483 * 336.38667 * 20 19 18 22 22 H 1.08997 * 110.02991 * 119.28530 * 21 20 19 23 23 C 1.52997 * 110.03204 * 240.71889 * 21 20 19 24 24 F 1.39902 * 109.47376 * 62.16861 * 23 21 20 25 25 F 1.39905 * 109.46981 * 182.16978 * 23 21 20 26 26 C 1.46925 * 118.74110 * 53.61233 * 13 12 11 27 27 C 1.53033 * 109.46052 * 205.03180 * 10 9 7 28 28 H 0.96995 * 119.99806 * 359.97438 * 1 2 3 29 29 H 0.97003 * 119.99981 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.45813 * 325.00655 * 10 9 7 31 31 H 1.08999 * 109.49982 * 301.32028 * 11 10 9 32 32 H 1.08994 * 109.49771 * 61.42048 * 11 10 9 33 33 H 1.08998 * 109.58680 * 185.57263 * 12 11 10 34 34 H 1.08997 * 109.70976 * 65.21011 * 12 11 10 35 35 H 1.09006 * 110.75541 * 321.69268 * 18 16 14 36 36 H 1.08998 * 110.75651 * 85.06554 * 18 16 14 37 37 H 1.09007 * 110.48969 * 156.62084 * 19 18 16 38 38 H 1.09001 * 110.49084 * 279.12985 * 19 18 16 39 39 H 1.08992 * 110.03499 * 95.67167 * 20 19 18 40 40 H 1.09005 * 110.02844 * 217.05943 * 20 19 18 41 41 H 1.09005 * 109.46986 * 302.16458 * 23 21 20 42 42 H 1.09003 * 109.58889 * 186.60082 * 26 13 12 43 43 H 1.09009 * 109.58715 * 66.17612 * 26 13 12 44 44 H 1.09001 * 109.50126 * 298.58042 * 27 10 9 45 45 H 1.09002 * 109.50169 * 58.65104 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 4.2571 -2.9758 -1.4385 12 6 4.9928 -4.3193 -1.4321 13 7 6.2668 -4.1570 -0.7184 14 6 7.4290 -4.5183 -1.2974 15 8 8.4805 -4.3035 -0.7323 16 6 7.4221 -5.1892 -2.6468 17 1 6.6582 -4.7481 -3.2871 18 6 7.1876 -6.7125 -2.4937 19 6 7.7992 -7.2851 -3.7963 20 6 9.0514 -6.4177 -4.0396 21 6 8.8116 -5.0849 -3.3087 22 1 9.5772 -4.9334 -2.5478 23 6 8.8300 -3.9277 -4.3093 24 9 7.7912 -4.0923 -5.2318 25 9 8.6604 -2.7183 -3.6268 26 6 6.2497 -3.5940 0.6385 27 6 5.4995 -2.2586 0.6089 28 1 -0.4849 0.8400 0.0004 29 1 3.8646 -0.3621 -0.0007 30 1 3.5648 -3.2062 0.5887 31 1 3.2690 -3.1048 -1.8802 32 1 4.8256 -2.2523 -2.0227 33 1 5.1859 -4.6350 -2.4573 34 1 4.3840 -5.0693 -0.9272 35 1 7.7115 -7.0980 -1.6190 36 1 6.1222 -6.9355 -2.4366 37 1 8.0794 -8.3296 -3.6593 38 1 7.0967 -7.1851 -4.6238 39 1 9.9333 -6.9128 -3.6334 40 1 9.1813 -6.2407 -5.1073 41 1 9.7847 -3.9173 -4.8352 42 1 7.2721 -3.4313 0.9796 43 1 5.7424 -4.2831 1.3138 44 1 6.0565 -1.5418 0.0054 45 1 5.3960 -1.8764 1.6244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996672287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:06 Heat of formation + Delta-G solvation = -138.274224 kcal Electronic energy + Delta-G solvation = -28094.258419 eV Core-core repulsion = 23974.831811 eV Total energy + Delta-G solvation = -4119.426608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.10920 -47.06944 -40.51907 -38.23833 -37.01174 -34.64292 -32.17215 -31.16887 -30.69099 -29.97737 -29.15119 -25.38707 -24.76175 -23.10500 -22.58128 -21.43531 -20.83506 -19.98407 -18.93126 -18.03939 -17.44087 -17.34826 -17.11922 -16.57791 -15.93098 -15.20875 -14.88248 -14.75033 -14.47474 -14.08721 -13.96854 -13.73956 -13.59802 -13.42699 -13.29455 -13.11761 -12.91365 -12.71341 -12.48398 -12.20992 -12.03183 -11.88217 -11.58176 -11.51387 -11.22550 -11.04816 -11.02525 -10.92186 -10.90641 -10.76041 -10.52035 -10.24917 -9.88784 -9.68247 -9.60343 -8.93952 -8.54934 -7.29676 -5.79095 -3.14761 2.59268 3.00374 3.37495 3.41307 3.45356 3.55545 3.86284 3.97873 4.12073 4.47051 4.58134 4.59467 4.70390 4.74753 4.90088 5.03749 5.08303 5.11898 5.16963 5.25363 5.27751 5.34691 5.36080 5.46738 5.48191 5.56163 5.62467 5.65240 5.70581 5.84378 5.86534 5.91750 5.93697 6.09859 6.16805 6.29182 6.38570 6.54392 6.79766 6.93741 7.46231 7.96430 8.17973 8.40144 9.18405 9.91415 10.11342 11.39145 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.003458 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.228570 B = 8096.391413 C = 8389.007041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.184 3.816 11 C -0.152 4.152 12 C 0.105 3.895 13 N -0.603 5.603 14 C 0.525 3.475 15 O -0.548 6.548 16 C -0.114 4.114 17 H 0.107 0.893 18 C -0.107 4.107 19 C -0.121 4.121 20 C -0.116 4.116 21 C -0.135 4.135 22 H 0.122 0.878 23 C 0.264 3.736 24 F -0.204 7.204 25 F -0.200 7.200 26 C 0.117 3.883 27 C -0.143 4.143 28 H 0.259 0.741 29 H 0.361 0.639 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.062 0.938 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.434 -15.761 -8.399 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.075 3.925 11 C -0.193 4.193 12 C -0.018 4.018 13 N -0.335 5.335 14 C 0.313 3.687 15 O -0.426 6.426 16 C -0.135 4.135 17 H 0.125 0.875 18 C -0.145 4.145 19 C -0.158 4.158 20 C -0.153 4.153 21 C -0.154 4.154 22 H 0.140 0.860 23 C 0.210 3.790 24 F -0.185 7.185 25 F -0.181 7.181 26 C -0.006 4.006 27 C -0.182 4.182 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.681 -15.660 -8.076 26.416 hybrid contribution 0.260 1.532 -0.135 1.560 sum 19.941 -14.128 -8.211 25.781 Atomic orbital electron populations 1.69696 1.05107 1.25861 1.57464 1.24664 0.95211 0.97208 1.01951 0.86565 0.79232 0.85011 0.77820 1.21093 1.21737 1.20319 1.19065 0.80536 0.94680 1.43135 0.89170 1.42803 1.04019 1.02002 1.90205 1.20130 0.90198 0.89388 0.92822 1.22636 1.00512 0.94820 1.01325 1.21923 0.84018 0.99193 0.96629 1.48119 1.06679 1.61898 1.16838 1.20263 0.83387 0.78097 0.86985 1.90635 1.30744 1.55981 1.65260 1.22200 0.98199 0.98069 0.95059 0.87522 1.22427 1.01934 0.91402 0.98745 1.22339 0.96766 0.99202 0.97528 1.22110 0.99282 0.93616 1.00331 1.22944 0.99779 0.94608 0.98106 0.85972 1.21987 0.89522 0.82106 0.85358 1.92972 1.62362 1.95560 1.67649 1.93036 1.96502 1.47649 1.80956 1.21599 1.01932 0.94706 0.82374 1.22242 0.97200 0.96557 1.02170 0.93045 0.80628 0.92538 0.90083 0.92207 0.90307 0.91160 0.90638 0.90262 0.90871 0.90825 0.90499 0.90912 0.87270 0.89324 0.91387 0.91914 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.22 27.73 -169.99 -4.71 17.51 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.24 -6.76 10.41 -15.06 -0.16 -6.91 16 8 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 9 N -0.75 -17.45 4.92 -53.38 -0.26 -17.72 16 10 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 11 C -0.15 -2.50 5.66 -26.62 -0.15 -2.65 16 12 C 0.11 1.34 6.32 -3.72 -0.02 1.32 16 13 N -0.60 -8.23 2.97 -172.78 -0.51 -8.74 16 14 C 0.52 7.25 6.90 -10.98 -0.08 7.17 16 15 O -0.55 -9.06 14.92 5.55 0.08 -8.97 16 16 C -0.11 -1.20 1.68 -90.11 -0.15 -1.35 16 17 H 0.11 1.16 5.34 -51.93 -0.28 0.89 16 18 C -0.11 -0.87 6.32 -24.74 -0.16 -1.03 16 19 C -0.12 -0.78 6.83 -25.08 -0.17 -0.95 16 20 C -0.12 -0.75 6.30 -25.61 -0.16 -0.91 16 21 C -0.14 -1.25 2.63 -89.50 -0.24 -1.48 16 22 H 0.12 1.29 6.75 -51.93 -0.35 0.94 16 23 C 0.26 2.55 4.63 37.16 0.17 2.72 16 24 F -0.20 -2.21 16.09 2.25 0.04 -2.18 16 25 F -0.20 -2.71 17.19 2.25 0.04 -2.67 16 26 C 0.12 1.62 6.44 -3.71 -0.02 1.60 16 27 C -0.14 -2.28 5.55 -26.61 -0.15 -2.42 16 28 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 29 H 0.36 8.45 5.66 -40.82 -0.23 8.22 16 30 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 31 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 0.86 5.46 -51.93 -0.28 0.58 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.40 7.56 -51.93 -0.39 0.01 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 1.28 7.00 -51.93 -0.36 0.91 16 43 H 0.07 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -33.29 356.25 -7.73 -41.02 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.98 Total: 6.33 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.56 Total: -1.61 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.00 Total: -54.79 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.97 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.07 Total: -4.85 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.29 -7.73 -41.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996672287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.253 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds