Wall clock time and date at job start Tue Mar 31 2020 10:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99934 * 2 1 4 4 H 1.48499 * 109.47479 * 269.99836 * 3 2 1 5 5 H 1.48500 * 109.47045 * 30.00331 * 3 2 1 6 6 H 1.48506 * 109.47126 * 150.00007 * 3 2 1 7 7 C 1.38811 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00140 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00030 * 0.02562 * 7 2 1 10 10 C 1.46504 * 119.99987 * 179.97438 * 9 7 2 11 11 C 1.53046 * 109.45842 * 84.93087 * 10 9 7 12 12 C 1.53193 * 109.31028 * 181.38506 * 11 10 9 13 13 N 1.46927 * 108.77663 * 305.36644 * 12 11 10 14 14 C 1.34774 * 120.62692 * 233.59122 * 13 12 11 15 15 O 1.21281 * 120.00056 * 180.02562 * 14 13 12 16 16 C 1.50698 * 120.00254 * 0.02562 * 14 13 12 17 17 C 1.53002 * 109.47115 * 180.02562 * 16 14 13 18 18 H 1.08993 * 110.02026 * 305.69913 * 17 16 14 19 19 C 1.54261 * 110.03454 * 67.09611 * 17 16 14 20 20 C 1.54961 * 104.16588 * 142.86079 * 19 17 16 21 21 C 1.54892 * 102.77423 * 322.11378 * 20 19 17 22 22 C 1.53879 * 110.03131 * 184.31177 * 17 16 14 23 23 F 1.39898 * 110.03076 * 359.97438 * 22 17 16 24 24 F 1.39905 * 110.03367 * 121.42931 * 22 17 16 25 25 C 1.46919 * 118.74179 * 53.60344 * 13 12 11 26 26 C 1.53046 * 109.46053 * 204.99557 * 10 9 7 27 27 H 0.96997 * 119.99966 * 0.02562 * 1 2 3 28 28 H 0.97002 * 120.00629 * 359.97438 * 9 7 2 29 29 H 1.08993 * 109.45092 * 324.96124 * 10 9 7 30 30 H 1.09001 * 109.49347 * 301.33544 * 11 10 9 31 31 H 1.08998 * 109.49687 * 61.43246 * 11 10 9 32 32 H 1.09000 * 109.58615 * 185.57833 * 12 11 10 33 33 H 1.08998 * 109.58446 * 65.14816 * 12 11 10 34 34 H 1.08998 * 109.47497 * 300.00767 * 16 14 13 35 35 H 1.09000 * 109.46870 * 60.00930 * 16 14 13 36 36 H 1.08998 * 110.48856 * 261.57473 * 19 17 16 37 37 H 1.09006 * 110.48593 * 24.21293 * 19 17 16 38 38 H 1.08998 * 110.77288 * 203.77631 * 20 19 17 39 39 H 1.09005 * 110.87523 * 80.49430 * 20 19 17 40 40 H 1.08992 * 110.48740 * 279.23137 * 21 20 19 41 41 H 1.09001 * 110.59582 * 156.64773 * 21 20 19 42 42 H 1.09002 * 109.59216 * 186.60571 * 25 13 12 43 43 H 1.09006 * 109.58250 * 66.18466 * 25 13 12 44 44 H 1.09004 * 109.49895 * 298.56712 * 26 10 9 45 45 H 1.08997 * 109.49204 * 58.63278 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 2.4235 -4.0358 1.4343 12 6 3.2191 -5.3449 1.4263 13 7 2.4415 -6.3665 0.7118 14 6 2.1736 -7.5542 1.2897 15 8 1.5311 -8.3895 0.6893 16 6 2.6722 -7.8444 2.6818 17 6 2.2347 -9.2504 3.0975 18 1 1.1552 -9.3531 2.9876 19 6 2.9566 -10.3054 2.2341 20 6 3.2412 -11.4694 3.2167 21 6 3.6011 -10.7295 4.5290 22 6 2.6439 -9.5200 4.5562 23 9 3.2993 -8.4026 5.0844 24 9 1.5132 -9.8208 5.3234 25 6 1.9619 -6.0689 -0.6447 26 6 1.1804 -4.7518 -0.6135 27 1 -0.4850 0.8400 -0.0004 28 1 0.3556 -2.3881 -0.0016 29 1 2.9683 -3.5498 -0.5927 30 1 3.0291 -3.2447 1.8764 31 1 1.5128 -4.1672 2.0186 32 1 3.3964 -5.6711 2.4511 33 1 4.1718 -5.1904 0.9197 34 1 3.7604 -7.7831 2.6982 35 1 2.2567 -7.1142 3.3762 36 1 2.3113 -10.6400 1.4218 37 1 3.8896 -9.9024 1.8400 38 1 4.0809 -12.0715 2.8699 39 1 2.3542 -12.0883 3.3530 40 1 4.6381 -10.3949 4.5062 41 1 3.4277 -11.3727 5.3918 42 1 1.3098 -6.8727 -0.9863 43 1 2.8122 -5.9734 -1.3201 44 1 0.2814 -4.8764 -0.0098 45 1 0.9009 -4.4698 -1.6286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996924142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:12 Heat of formation + Delta-G solvation = -141.024035 kcal Electronic energy + Delta-G solvation = -27336.375884 eV Core-core repulsion = 23216.830035 eV Total energy + Delta-G solvation = -4119.545849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.16601 -47.22069 -40.25301 -38.05263 -37.00858 -34.50993 -32.54709 -31.81897 -30.68665 -29.28611 -28.14608 -26.48497 -24.63559 -23.01884 -22.54134 -21.63162 -20.84226 -20.08500 -18.85699 -17.98350 -17.38792 -17.08468 -16.62670 -16.08062 -15.67416 -15.53050 -14.85178 -14.74228 -14.46301 -14.18748 -13.83112 -13.77300 -13.74916 -13.54477 -13.49388 -13.16247 -13.15109 -12.56226 -12.34811 -12.16327 -12.03683 -11.76435 -11.59896 -11.52119 -11.21612 -11.05220 -10.97219 -10.90866 -10.87396 -10.82933 -10.50403 -10.25313 -9.86048 -9.73710 -9.67196 -8.93801 -8.52573 -7.00870 -5.80215 -3.09677 2.63434 2.97403 3.40683 3.45725 3.47674 3.48564 3.61728 3.88132 4.01913 4.53193 4.55447 4.58854 4.70972 4.82522 4.95824 5.00813 5.01898 5.13224 5.27168 5.31214 5.32100 5.37280 5.40039 5.47572 5.51588 5.54987 5.63596 5.68368 5.70139 5.85780 5.91962 5.95279 5.98133 6.19976 6.34611 6.35992 6.48434 6.59313 6.86344 7.00935 7.47697 7.65537 8.18772 8.37982 9.49175 10.06564 10.41151 11.42338 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.024482 B = 0.002696 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.412886 B =10385.071862 C =10944.489604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.152 4.152 12 C 0.105 3.895 13 N -0.605 5.605 14 C 0.517 3.483 15 O -0.548 6.548 16 C -0.134 4.134 17 C -0.114 4.114 18 H 0.109 0.891 19 C -0.110 4.110 20 C -0.125 4.125 21 C -0.161 4.161 22 C 0.282 3.718 23 F -0.197 7.197 24 F -0.197 7.197 25 C 0.116 3.884 26 C -0.139 4.139 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.063 0.937 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.833 -22.948 6.854 25.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.193 4.193 12 C -0.018 4.018 13 N -0.338 5.338 14 C 0.305 3.695 15 O -0.427 6.427 16 C -0.174 4.174 17 C -0.133 4.133 18 H 0.127 0.873 19 C -0.147 4.147 20 C -0.162 4.162 21 C -0.199 4.199 22 C 0.246 3.754 23 F -0.178 7.178 24 F -0.178 7.178 25 C -0.006 4.006 26 C -0.178 4.178 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.595 -23.180 6.557 25.577 hybrid contribution 0.078 1.358 0.372 1.410 sum 8.673 -21.822 6.929 24.483 Atomic orbital electron populations 1.69663 1.05141 1.25717 1.57508 1.24758 0.95506 0.97739 1.02932 0.86202 0.78642 0.83879 0.77522 1.21717 1.21787 1.20747 1.19225 0.90956 0.84086 1.42895 0.91165 1.42440 1.05818 0.99708 1.88493 1.20162 0.94440 0.86102 0.92414 1.22684 1.00084 0.94726 1.01806 1.21908 0.94568 0.88853 0.96479 1.48170 1.53882 1.14757 1.16962 1.20382 0.79736 0.81538 0.87819 1.90659 1.40643 1.46139 1.65217 1.21718 1.03273 0.97098 0.95279 1.22534 1.04036 0.95957 0.90817 0.87325 1.22403 1.00727 0.93802 0.97786 1.22532 1.02468 0.97724 0.93526 1.23356 0.99905 0.95599 1.01041 1.21901 0.80862 0.84321 0.88355 1.92998 1.81244 1.55159 1.88410 1.93023 1.53435 1.93308 1.78079 1.21613 0.98697 0.98057 0.82273 1.22208 0.99218 0.94158 1.02236 0.93467 0.78259 0.93426 0.90563 0.92174 0.90364 0.91350 0.88165 0.88039 0.89137 0.90909 0.90018 0.90475 0.88386 0.89038 0.89360 0.91608 0.91868 0.90557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.62 5.12 -53.38 -0.27 -17.90 16 10 C 0.18 3.35 2.73 -67.88 -0.19 3.17 16 11 C -0.15 -2.48 5.66 -26.61 -0.15 -2.63 16 12 C 0.11 1.30 6.34 -3.71 -0.02 1.28 16 13 N -0.60 -8.04 2.97 -172.78 -0.51 -8.55 16 14 C 0.52 6.82 7.48 -10.99 -0.08 6.74 16 15 O -0.55 -8.57 14.20 5.56 0.08 -8.49 16 16 C -0.13 -1.38 2.52 -27.88 -0.07 -1.45 16 17 C -0.11 -1.12 2.40 -89.50 -0.21 -1.33 16 18 H 0.11 1.22 7.82 -51.93 -0.41 0.81 16 19 C -0.11 -0.91 5.40 -25.04 -0.14 -1.05 16 20 C -0.13 -0.78 6.91 -24.70 -0.17 -0.95 16 21 C -0.16 -1.09 6.40 -25.07 -0.16 -1.25 16 22 C 0.28 2.69 2.53 -25.61 -0.06 2.63 16 23 F -0.20 -2.10 15.46 2.25 0.03 -2.07 16 24 F -0.20 -2.25 17.04 2.25 0.04 -2.21 16 25 C 0.12 1.61 6.43 -3.72 -0.02 1.59 16 26 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 29 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.81 5.93 -51.93 -0.31 0.50 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.10 0.86 7.77 -51.93 -0.40 0.46 16 35 H 0.10 1.06 7.34 -51.93 -0.38 0.68 16 36 H 0.09 0.87 7.63 -51.93 -0.40 0.48 16 37 H 0.07 0.58 7.77 -51.93 -0.40 0.17 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 41 H 0.09 0.55 8.11 -51.93 -0.42 0.13 16 42 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 359.14 15.07 5.41 5.41 Total: -1.00 -31.21 359.14 -8.37 -39.57 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.17 Total: 7.19 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.67 Total: -2.78 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.06 Total: -53.63 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.49 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.07 Total: -4.28 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.21 -8.37 -39.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996924142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.452 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds