Wall clock time and date at job start Tue Mar 31 2020 10:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99682 * 2 1 4 4 H 1.48500 * 109.47100 * 269.99926 * 3 2 1 5 5 H 1.48490 * 109.47212 * 30.00309 * 3 2 1 6 6 H 1.48501 * 109.47165 * 150.00350 * 3 2 1 7 7 C 1.38811 * 120.00479 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00575 * 179.97438 * 7 2 1 9 9 N 1.36944 * 119.99525 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99602 * 180.02562 * 9 7 2 11 11 C 1.53042 * 109.46030 * 205.00073 * 10 9 7 12 12 C 1.53191 * 109.31609 * 178.62756 * 11 10 9 13 13 N 1.46933 * 108.77050 * 54.63946 * 12 11 10 14 14 C 1.34777 * 120.62914 * 126.37064 * 13 12 11 15 15 O 1.21282 * 120.00053 * 359.97438 * 14 13 12 16 16 C 1.50703 * 119.99677 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.46808 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.01700 * 306.39118 * 17 16 14 19 19 C 1.54266 * 110.03121 * 185.00243 * 17 16 14 20 20 C 1.54894 * 104.31305 * 216.98718 * 19 17 16 21 21 C 1.55238 * 102.58338 * 37.93170 * 20 19 17 22 22 C 1.53869 * 110.07634 * 67.80800 * 17 16 14 23 23 F 1.39893 * 110.03689 * 238.59239 * 22 17 16 24 24 F 1.39903 * 110.02908 * 359.97346 * 22 17 16 25 25 C 1.46926 * 118.73871 * 306.63963 * 13 12 11 26 26 C 1.52765 * 109.00549 * 53.31047 * 25 13 12 27 27 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99998 * 0.02562 * 9 7 2 29 29 H 1.08998 * 109.46443 * 324.97695 * 10 9 7 30 30 H 1.09003 * 109.49449 * 58.68078 * 11 10 9 31 31 H 1.08997 * 109.52447 * 298.60206 * 11 10 9 32 32 H 1.09005 * 109.58739 * 294.85493 * 12 11 10 33 33 H 1.08998 * 109.70369 * 174.49177 * 12 11 10 34 34 H 1.09000 * 109.47176 * 59.99969 * 16 14 13 35 35 H 1.08997 * 109.47178 * 299.99793 * 16 14 13 36 36 H 1.09002 * 110.48629 * 335.73471 * 19 17 16 37 37 H 1.08998 * 110.48744 * 98.24375 * 19 17 16 38 38 H 1.08996 * 110.75388 * 156.31523 * 20 19 17 39 39 H 1.08993 * 110.76071 * 279.69749 * 20 19 17 40 40 H 1.09005 * 110.46917 * 203.39204 * 21 20 19 41 41 H 1.09007 * 110.58541 * 80.83124 * 21 20 19 42 42 H 1.08992 * 109.58538 * 173.14517 * 25 13 12 43 43 H 1.08999 * 109.58909 * 293.57316 * 25 13 12 44 44 H 1.08998 * 109.56144 * 185.54774 * 26 25 13 45 45 H 1.09004 * 109.38260 * 65.51540 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 1.1806 -4.7522 -0.6104 12 6 1.9621 -6.0695 -0.6402 13 7 2.4412 -6.3658 0.7168 14 6 2.1723 -7.5526 1.2961 15 8 1.5288 -8.3879 0.6969 16 6 2.6712 -7.8417 2.6885 17 6 2.2315 -9.2463 3.1064 18 1 1.1533 -9.3511 2.9855 19 6 2.6266 -9.5089 4.5742 20 6 3.0409 -11.0012 4.5982 21 6 3.7756 -11.1701 3.2412 22 6 2.9619 -10.3025 2.2588 23 9 2.0332 -11.0949 1.5757 24 9 3.8193 -9.6764 1.3476 25 6 3.2139 -5.3414 1.4326 26 6 2.4231 -4.0344 1.4369 27 1 -0.4850 0.8400 0.0004 28 1 0.3557 -2.3881 -0.0005 29 1 2.9686 -3.5504 -0.5903 30 1 0.9018 -4.4716 -1.6261 31 1 0.2812 -4.8763 -0.0074 32 1 2.8125 -5.9746 -1.3154 33 1 1.3120 -6.8748 -0.9821 34 1 2.2568 -7.1102 3.3821 35 1 3.7594 -7.7816 2.7043 36 1 3.4655 -8.8754 4.8627 37 1 1.7764 -9.3384 5.2346 38 1 3.7135 -11.2020 5.4320 39 1 2.1628 -11.6452 4.6449 40 1 3.7632 -12.2142 2.9283 41 1 4.8007 -10.8063 3.3125 42 1 3.3875 -5.6653 2.4587 43 1 4.1685 -5.1860 0.9299 44 1 3.0287 -3.2429 1.8785 45 1 1.5123 -4.1646 2.0213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996924149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:15 Heat of formation + Delta-G solvation = -138.317989 kcal Electronic energy + Delta-G solvation = -27662.963510 eV Core-core repulsion = 23543.535004 eV Total energy + Delta-G solvation = -4119.428506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.88879 -46.93904 -40.09458 -37.98515 -37.08604 -34.46682 -32.50431 -31.79264 -30.67088 -29.26518 -28.19057 -26.38232 -24.60254 -22.97120 -22.49365 -21.63770 -20.75474 -20.03472 -18.72979 -17.80672 -17.24582 -17.06792 -16.70425 -16.22683 -15.72358 -15.23835 -14.82837 -14.61689 -14.31305 -14.06662 -13.79414 -13.76017 -13.50638 -13.38971 -13.33655 -13.14415 -12.94892 -12.55859 -12.20217 -12.12518 -11.90185 -11.76361 -11.62086 -11.57080 -11.53689 -11.11169 -10.96213 -10.86589 -10.82511 -10.66336 -10.47470 -10.24505 -9.83800 -9.69730 -9.61906 -8.92896 -8.44032 -6.99927 -5.79643 -3.08983 2.76171 3.10200 3.40865 3.45903 3.47739 3.58522 3.71364 3.94710 4.08446 4.51084 4.55828 4.61621 4.73068 4.85796 4.99138 5.02222 5.06371 5.13814 5.28201 5.33289 5.35790 5.36395 5.41390 5.44216 5.49508 5.53413 5.58655 5.66632 5.72866 5.74165 5.89111 5.96159 6.03693 6.23726 6.37084 6.40110 6.51019 6.63704 6.89461 7.02933 7.56697 7.66231 8.30262 8.38651 9.49796 10.07516 10.42186 11.42925 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.030999 B = 0.002689 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.037972 B =10411.235995 C =10762.364923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.138 4.138 12 C 0.117 3.883 13 N -0.606 5.606 14 C 0.515 3.485 15 O -0.543 6.543 16 C -0.135 4.135 17 C -0.118 4.118 18 H 0.108 0.892 19 C -0.120 4.120 20 C -0.122 4.122 21 C -0.165 4.165 22 C 0.294 3.706 23 F -0.192 7.192 24 F -0.197 7.197 25 C 0.108 3.892 26 C -0.152 4.152 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.367 -21.936 10.149 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.177 4.177 12 C -0.006 4.006 13 N -0.339 5.339 14 C 0.303 3.697 15 O -0.421 6.421 16 C -0.175 4.175 17 C -0.137 4.137 18 H 0.126 0.874 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.203 4.203 22 C 0.258 3.742 23 F -0.173 7.173 24 F -0.178 7.178 25 C -0.016 4.016 26 C -0.193 4.193 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.106 0.894 34 H 0.122 0.878 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.139 -22.207 9.760 25.586 hybrid contribution 0.163 1.165 -0.184 1.190 sum 8.302 -21.042 9.576 24.564 Atomic orbital electron populations 1.69664 1.05135 1.25691 1.57575 1.24756 0.95501 0.97720 1.02979 0.86204 0.78624 0.83895 0.77538 1.21718 1.21803 1.20761 1.19232 0.90960 0.84096 1.42807 0.91169 1.42442 1.05814 0.99716 1.88496 1.20156 0.94460 0.86079 0.92417 1.22202 0.99174 0.94174 1.02190 1.21592 0.98681 0.97940 0.82387 1.48120 1.54251 1.14714 1.16811 1.20431 0.79723 0.81522 0.88046 1.90708 1.40459 1.45822 1.65086 1.21729 1.03379 0.96949 0.95398 1.22617 1.02895 0.93130 0.95089 0.87396 1.22448 1.02400 0.96637 0.94232 1.22521 1.00623 0.96662 0.96126 1.23462 1.00428 1.01155 0.95300 1.21592 0.81774 0.87471 0.83395 1.93020 1.67050 1.75011 1.82186 1.92984 1.70983 1.83326 1.70482 1.21769 0.94716 0.88779 0.96302 1.22600 1.00074 0.94779 1.01823 0.93483 0.78269 0.93427 0.90613 0.91907 0.91723 0.89411 0.87778 0.88123 0.90237 0.89965 0.89912 0.90420 0.89113 0.88522 0.90607 0.91499 0.90606 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.72 -17.72 5.12 -53.39 -0.27 -17.99 16 10 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 11 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 12 C 0.12 1.76 6.44 -3.71 -0.02 1.73 16 13 N -0.61 -8.66 2.98 -173.02 -0.52 -9.18 16 14 C 0.51 7.47 6.60 -10.98 -0.07 7.40 16 15 O -0.54 -9.71 13.99 5.56 0.08 -9.63 16 16 C -0.13 -1.37 2.98 -27.88 -0.08 -1.46 16 17 C -0.12 -1.15 2.40 -89.51 -0.21 -1.36 16 18 H 0.11 1.21 7.80 -51.93 -0.41 0.80 16 19 C -0.12 -0.73 6.35 -25.07 -0.16 -0.89 16 20 C -0.12 -0.68 6.94 -24.55 -0.17 -0.85 16 21 C -0.17 -1.22 6.41 -24.88 -0.16 -1.38 16 22 C 0.29 3.33 1.80 -25.62 -0.05 3.28 16 23 F -0.19 -2.74 16.76 2.25 0.04 -2.70 16 24 F -0.20 -2.68 14.10 2.25 0.03 -2.64 16 25 C 0.11 1.37 6.31 -3.93 -0.02 1.34 16 26 C -0.15 -2.48 5.64 -26.83 -0.15 -2.63 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.38 10.12 7.80 -40.82 -0.32 9.81 16 29 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 30 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 34 H 0.10 0.88 7.68 -51.93 -0.40 0.48 16 35 H 0.10 0.89 7.45 -51.93 -0.39 0.50 16 36 H 0.08 0.40 7.86 -51.93 -0.41 -0.01 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 41 H 0.10 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.08 0.76 5.93 -51.93 -0.31 0.45 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.69 15.07 5.39 5.39 Total: -1.00 -33.06 357.69 -8.44 -41.49 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.20 Total: 6.62 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.68 Total: -1.16 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.06 Total: -54.37 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.63 kcal Atomic # 9 Polarization: -5.41 SS G_CDS: 0.07 Total: -5.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.06 -8.44 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996924149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.825 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds