Wall clock time and date at job start Tue Mar 31 2020 10:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46992 * 90.00347 * 3 2 1 5 5 H 1.48504 * 109.47025 * 210.00355 * 3 2 1 6 6 H 1.48504 * 109.47058 * 330.00221 * 3 2 1 7 7 C 1.38810 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00781 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.45758 * 275.06714 * 10 9 7 12 12 C 1.53200 * 109.31188 * 178.61388 * 11 10 9 13 13 N 1.46920 * 108.77267 * 54.63653 * 12 11 10 14 14 C 1.34774 * 120.63474 * 126.41586 * 13 12 11 15 15 O 1.21285 * 119.99300 * 355.58772 * 14 13 12 16 16 C 1.50701 * 120.00523 * 175.58617 * 14 13 12 17 17 H 1.08993 * 109.46712 * 37.87995 * 16 14 13 18 18 C 1.53008 * 109.46966 * 157.88187 * 16 14 13 19 19 C 1.52999 * 109.46688 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47204 * 299.99842 * 19 18 16 21 21 C 1.53003 * 109.46908 * 60.00273 * 20 19 18 22 22 F 1.39894 * 109.47210 * 60.00031 * 21 20 19 23 23 F 1.39901 * 109.47058 * 180.02562 * 21 20 19 24 24 C 1.52994 * 109.47254 * 299.99723 * 21 20 19 25 25 C 1.46927 * 118.73921 * 306.38633 * 13 12 11 26 26 C 1.53038 * 109.46285 * 155.00006 * 10 9 7 27 27 H 0.96996 * 120.00688 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99938 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46134 * 35.02192 * 10 9 7 30 30 H 1.08996 * 109.49910 * 298.56308 * 11 10 9 31 31 H 1.09004 * 109.50190 * 58.66359 * 11 10 9 32 32 H 1.08997 * 109.58541 * 294.84810 * 12 11 10 33 33 H 1.09002 * 109.58259 * 174.42197 * 12 11 10 34 34 H 1.08998 * 109.46831 * 300.00111 * 18 16 14 35 35 H 1.09000 * 109.47185 * 60.00180 * 18 16 14 36 36 H 1.09000 * 109.47191 * 60.00147 * 19 18 16 37 37 H 1.08999 * 109.47123 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.47325 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47296 * 300.00241 * 20 19 18 40 40 H 1.09000 * 109.47169 * 300.00167 * 24 21 20 41 41 H 1.09003 * 109.47756 * 180.02562 * 24 21 20 42 42 H 1.08997 * 109.58752 * 293.82846 * 25 13 12 43 43 H 1.09004 * 109.58893 * 173.39906 * 25 13 12 44 44 H 1.09003 * 109.49643 * 301.33617 * 26 10 9 45 45 H 1.08999 * 109.49636 * 61.43179 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4234 -4.0346 -1.4379 12 6 3.2191 -5.3437 -1.4311 13 7 2.4415 -6.3659 -0.7175 14 6 2.1735 -7.5531 -1.2963 15 8 2.5056 -7.7564 -2.4450 16 6 1.4614 -8.6281 -0.5163 17 1 0.6992 -8.1734 0.1163 18 6 0.8001 -9.6091 -1.4867 19 6 0.0766 -10.7000 -0.6948 20 6 1.0843 -11.4488 0.1797 21 6 1.7456 -10.4679 1.1500 22 9 0.7672 -9.8839 1.9616 23 9 2.6674 -11.1524 1.9492 24 6 2.4691 -9.3769 0.3581 25 6 1.9621 -6.0695 0.6393 26 6 1.1805 -4.7523 0.6093 27 1 -0.4851 0.8399 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 2.9685 -3.5505 0.5893 30 1 1.5127 -4.1654 -2.0223 31 1 3.0290 -3.2431 -1.8794 32 1 4.1718 -5.1896 -0.9245 33 1 3.3963 -5.6689 -2.4562 34 1 0.0819 -9.0756 -2.1093 35 1 1.5624 -10.0638 -2.1194 36 1 -0.6857 -10.2450 -0.0624 37 1 -0.3941 -11.3991 -1.3860 38 1 0.5690 -12.2264 0.7435 39 1 1.8466 -11.9039 -0.4527 40 1 3.2314 -9.8320 -0.2743 41 1 2.9406 -8.6782 1.0493 42 1 2.8123 -5.9745 1.3147 43 1 1.3099 -6.8736 0.9803 44 1 0.9015 -4.4716 1.6249 45 1 0.2815 -4.8764 0.0056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996998159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:06 Heat of formation + Delta-G solvation = -143.633922 kcal Electronic energy + Delta-G solvation = -27707.021719 eV Core-core repulsion = 23587.362697 eV Total energy + Delta-G solvation = -4119.659022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.27331 -47.25651 -40.51428 -38.00585 -36.93093 -34.55793 -32.41715 -31.70150 -30.66546 -30.23655 -29.22172 -25.33814 -24.24245 -23.23995 -22.75615 -22.47464 -20.82891 -19.95303 -18.97134 -17.75178 -17.29122 -17.01893 -16.84654 -16.63776 -15.67484 -15.50229 -14.86002 -14.69853 -14.49817 -14.04884 -13.91523 -13.72104 -13.62283 -13.57631 -13.45988 -13.13852 -13.05918 -13.01171 -12.62061 -12.46682 -12.13143 -11.97576 -11.63000 -11.51477 -11.24880 -11.08004 -10.97231 -10.92981 -10.82897 -10.73130 -10.45011 -10.26905 -9.95702 -9.73236 -9.58223 -8.93306 -8.55430 -7.00658 -5.80278 -3.09604 2.50842 2.95236 3.41072 3.43339 3.46484 3.48045 3.68899 3.94211 3.97795 4.43056 4.45702 4.54897 4.57877 4.72021 4.75328 4.90920 4.95938 5.10864 5.19193 5.28513 5.32032 5.39623 5.41511 5.45703 5.49656 5.54922 5.58074 5.65521 5.75554 5.79479 5.86666 5.95308 5.97732 6.17992 6.25008 6.40978 6.51665 6.55598 6.88165 7.01677 7.43982 7.66225 8.14637 8.38014 9.49317 10.06218 10.40823 11.42289 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002820 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.340591 B = 9927.240977 C =10231.357231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.149 4.149 12 C 0.111 3.889 13 N -0.603 5.603 14 C 0.521 3.479 15 O -0.544 6.544 16 C -0.108 4.108 17 H 0.105 0.895 18 C -0.106 4.106 19 C -0.119 4.119 20 C -0.159 4.159 21 C 0.292 3.708 22 F -0.197 7.197 23 F -0.201 7.201 24 C -0.148 4.148 25 C 0.106 3.894 26 C -0.140 4.140 27 H 0.255 0.745 28 H 0.384 0.616 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.393 -24.294 1.245 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.207 1.207 6 H -0.218 1.218 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.365 5.365 10 C 0.069 3.931 11 C -0.191 4.191 12 C -0.011 4.011 13 N -0.335 5.335 14 C 0.308 3.692 15 O -0.421 6.421 16 C -0.130 4.130 17 H 0.123 0.877 18 C -0.144 4.144 19 C -0.157 4.157 20 C -0.197 4.197 21 C 0.256 3.744 22 F -0.178 7.178 23 F -0.182 7.182 24 C -0.187 4.187 25 C -0.017 4.017 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.114 0.886 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.693 -24.218 0.687 24.377 hybrid contribution 0.132 1.111 0.291 1.156 sum 2.825 -23.108 0.978 23.300 Atomic orbital electron populations 1.69655 1.05130 1.25715 1.57565 1.24746 0.95505 0.97719 1.02915 0.86204 0.78677 0.83872 0.77518 1.21709 1.20745 1.21780 1.19230 0.90977 0.84080 1.42855 0.91168 1.42423 1.05784 0.99701 1.88545 1.20162 0.94353 0.86024 0.92590 1.22662 1.00152 0.94837 1.01401 1.21732 0.93785 0.87893 0.97700 1.48200 1.53683 1.14780 1.16878 1.20284 0.79247 0.82748 0.86904 1.90678 1.53531 1.80466 1.17452 1.21321 0.98226 0.95480 0.97923 0.87697 1.21475 1.00333 0.95585 0.97035 1.21544 0.97577 0.97899 0.98636 1.22554 1.00921 0.98029 0.98187 1.21005 0.79738 0.90096 0.83544 1.93010 1.63684 1.85406 1.75668 1.93019 1.67519 1.81110 1.76523 1.22439 0.98915 0.97725 0.99572 1.21897 0.98790 0.98384 0.82677 1.22213 0.99221 0.94092 1.02395 0.93478 0.78278 0.93416 0.92266 0.90701 0.91750 0.89645 0.90413 0.90161 0.90645 0.89968 0.89344 0.88611 0.88044 0.88808 0.91086 0.89924 0.90346 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.56 5.12 -53.39 -0.27 -17.83 16 10 C 0.18 3.34 2.73 -67.89 -0.19 3.15 16 11 C -0.15 -2.60 5.66 -26.61 -0.15 -2.75 16 12 C 0.11 1.62 6.44 -3.71 -0.02 1.60 16 13 N -0.60 -7.98 2.97 -172.77 -0.51 -8.49 16 14 C 0.52 6.85 6.83 -10.99 -0.08 6.77 16 15 O -0.54 -8.87 15.47 5.55 0.09 -8.78 16 16 C -0.11 -1.04 1.57 -91.77 -0.14 -1.19 16 17 H 0.11 0.96 5.88 -51.93 -0.31 0.66 16 18 C -0.11 -0.91 4.70 -26.73 -0.13 -1.04 16 19 C -0.12 -0.77 5.80 -26.73 -0.16 -0.92 16 20 C -0.16 -1.03 5.45 -26.73 -0.15 -1.17 16 21 C 0.29 2.50 2.10 -26.73 -0.06 2.44 16 22 F -0.20 -1.97 16.02 2.25 0.04 -1.93 16 23 F -0.20 -2.01 17.06 2.25 0.04 -1.97 16 24 C -0.15 -1.26 4.68 -26.73 -0.13 -1.39 16 25 C 0.11 1.24 5.94 -3.71 -0.02 1.22 16 26 C -0.14 -2.11 5.55 -26.61 -0.15 -2.25 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 28 H 0.38 9.97 7.80 -40.82 -0.32 9.65 16 29 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.30 7.00 -51.93 -0.36 0.94 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 36 H 0.07 0.51 7.80 -51.93 -0.41 0.10 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.79 7.78 -51.93 -0.40 0.39 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 0.80 5.42 -51.93 -0.28 0.52 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -31.52 356.80 -8.25 -39.77 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.10 Total: 6.49 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -1.60 Total: -2.63 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.06 Total: -53.41 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 9 Polarization: -3.98 SS G_CDS: 0.07 Total: -3.90 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.52 -8.25 -39.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996998159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.864 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds