Wall clock time and date at job start Tue Mar 31 2020 10:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99956 * 2 1 4 4 H 1.48497 * 109.46992 * 90.00347 * 3 2 1 5 5 H 1.48504 * 109.47025 * 210.00355 * 3 2 1 6 6 H 1.48504 * 109.47058 * 330.00221 * 3 2 1 7 7 C 1.38810 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00781 * 180.02562 * 7 2 1 9 9 N 1.36944 * 119.99989 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00188 * 180.02562 * 9 7 2 11 11 C 1.53038 * 109.45758 * 275.06714 * 10 9 7 12 12 C 1.53200 * 109.31188 * 178.61388 * 11 10 9 13 13 N 1.46920 * 108.77267 * 54.63653 * 12 11 10 14 14 C 1.34774 * 120.63474 * 126.41586 * 13 12 11 15 15 O 1.21285 * 119.99300 * 355.58772 * 14 13 12 16 16 C 1.50701 * 120.00523 * 175.58617 * 14 13 12 17 17 H 1.08993 * 109.46712 * 37.87995 * 16 14 13 18 18 C 1.53008 * 109.46966 * 157.88187 * 16 14 13 19 19 C 1.52999 * 109.46688 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.47204 * 299.99842 * 19 18 16 21 21 C 1.53003 * 109.46908 * 60.00273 * 20 19 18 22 22 F 1.39894 * 109.47210 * 60.00031 * 21 20 19 23 23 F 1.39901 * 109.47058 * 180.02562 * 21 20 19 24 24 C 1.52994 * 109.47254 * 299.99723 * 21 20 19 25 25 C 1.46927 * 118.73921 * 306.38633 * 13 12 11 26 26 C 1.53038 * 109.46285 * 155.00006 * 10 9 7 27 27 H 0.96996 * 120.00688 * 0.02562 * 1 2 3 28 28 H 0.96995 * 119.99938 * 359.97438 * 9 7 2 29 29 H 1.08998 * 109.46134 * 35.02192 * 10 9 7 30 30 H 1.08996 * 109.49910 * 298.56308 * 11 10 9 31 31 H 1.09004 * 109.50190 * 58.66359 * 11 10 9 32 32 H 1.08997 * 109.58541 * 294.84810 * 12 11 10 33 33 H 1.09002 * 109.58259 * 174.42197 * 12 11 10 34 34 H 1.08998 * 109.46831 * 300.00111 * 18 16 14 35 35 H 1.09000 * 109.47185 * 60.00180 * 18 16 14 36 36 H 1.09000 * 109.47191 * 60.00147 * 19 18 16 37 37 H 1.08999 * 109.47123 * 180.02562 * 19 18 16 38 38 H 1.08996 * 109.47325 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47296 * 300.00241 * 20 19 18 40 40 H 1.09000 * 109.47169 * 300.00167 * 24 21 20 41 41 H 1.09003 * 109.47756 * 180.02562 * 24 21 20 42 42 H 1.08997 * 109.58752 * 293.82846 * 25 13 12 43 43 H 1.09004 * 109.58893 * 173.39906 * 25 13 12 44 44 H 1.09003 * 109.49643 * 301.33617 * 26 10 9 45 45 H 1.08999 * 109.49636 * 61.43179 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4402 -0.7001 6 1 1.4475 2.6527 -0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 2.4234 -4.0346 -1.4379 12 6 3.2191 -5.3437 -1.4311 13 7 2.4415 -6.3659 -0.7175 14 6 2.1735 -7.5531 -1.2963 15 8 2.5056 -7.7564 -2.4450 16 6 1.4614 -8.6281 -0.5163 17 1 0.6992 -8.1734 0.1163 18 6 0.8001 -9.6091 -1.4867 19 6 0.0766 -10.7000 -0.6948 20 6 1.0843 -11.4488 0.1797 21 6 1.7456 -10.4679 1.1500 22 9 0.7672 -9.8839 1.9616 23 9 2.6674 -11.1524 1.9492 24 6 2.4691 -9.3769 0.3581 25 6 1.9621 -6.0695 0.6393 26 6 1.1805 -4.7523 0.6093 27 1 -0.4851 0.8399 -0.0004 28 1 0.3557 -2.3881 0.0002 29 1 2.9685 -3.5505 0.5893 30 1 1.5127 -4.1654 -2.0223 31 1 3.0290 -3.2431 -1.8794 32 1 4.1718 -5.1896 -0.9245 33 1 3.3963 -5.6689 -2.4562 34 1 0.0819 -9.0756 -2.1093 35 1 1.5624 -10.0638 -2.1194 36 1 -0.6857 -10.2450 -0.0624 37 1 -0.3941 -11.3991 -1.3860 38 1 0.5690 -12.2264 0.7435 39 1 1.8466 -11.9039 -0.4527 40 1 3.2314 -9.8320 -0.2743 41 1 2.9406 -8.6782 1.0493 42 1 2.8123 -5.9745 1.3147 43 1 1.3099 -6.8736 0.9803 44 1 0.9015 -4.4716 1.6249 45 1 0.2815 -4.8764 0.0056 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996998159.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:05 Heat of formation + Delta-G solvation = -162.027367 kcal Electronic energy + Delta-G solvation = -27707.819319 eV Core-core repulsion = 23587.362697 eV Total energy + Delta-G solvation = -4120.456622 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.96687 -47.96268 -41.55679 -39.11571 -37.88793 -36.18263 -33.92885 -32.83159 -31.73860 -30.97537 -30.83201 -26.77297 -25.46856 -24.20261 -23.96911 -23.57305 -21.83077 -20.97035 -20.07569 -19.13815 -18.51755 -18.08444 -17.64476 -17.34745 -16.71428 -16.68140 -16.31545 -15.65691 -15.48157 -15.40975 -15.23013 -15.08534 -14.77289 -14.41961 -14.30512 -14.25910 -14.03557 -13.76597 -13.68863 -13.37361 -13.26585 -13.08368 -12.85119 -12.78135 -12.58133 -12.33916 -12.20326 -12.15085 -11.95626 -11.86557 -11.71885 -11.69281 -11.50454 -11.30330 -10.90507 -10.65864 -9.70926 -9.01622 -7.94417 -5.22909 1.47306 1.48398 1.49017 1.56656 1.92428 2.55847 2.77095 3.04580 3.28207 3.33488 3.38873 3.60129 3.75983 3.80287 3.81665 3.95474 4.10666 4.13066 4.15788 4.20167 4.28348 4.38107 4.40161 4.43911 4.60269 4.69471 4.72844 4.81541 4.83913 4.86166 4.91239 4.92044 4.96933 5.08774 5.14192 5.15663 5.29453 5.37595 5.47906 5.52958 5.58462 6.27789 6.38119 7.09024 7.33944 8.09979 8.32448 9.29102 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.002820 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.340591 B = 9927.240977 C =10231.357231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.970 3.030 4 H -0.286 1.286 5 H -0.270 1.270 6 H -0.299 1.299 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.738 5.738 10 C 0.173 3.827 11 C -0.137 4.137 12 C 0.121 3.879 13 N -0.605 5.605 14 C 0.519 3.481 15 O -0.578 6.578 16 C -0.101 4.101 17 H 0.113 0.887 18 C -0.106 4.106 19 C -0.112 4.112 20 C -0.156 4.156 21 C 0.289 3.711 22 F -0.205 7.205 23 F -0.209 7.209 24 C -0.145 4.145 25 C 0.113 3.887 26 C -0.132 4.132 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.050 0.950 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.081 0.919 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -26.167 2.065 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.799 3.201 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.225 1.225 7 C -0.369 4.369 8 H 0.095 0.905 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.178 4.178 12 C -0.002 4.002 13 N -0.337 5.337 14 C 0.308 3.692 15 O -0.458 6.458 16 C -0.122 4.122 17 H 0.131 0.869 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.194 4.194 21 C 0.253 3.747 22 F -0.186 7.186 23 F -0.190 7.190 24 C -0.183 4.183 25 C -0.010 4.010 26 C -0.171 4.171 27 H 0.059 0.941 28 H 0.203 0.797 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.128 0.872 44 H 0.099 0.901 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.592 -26.136 1.522 26.426 hybrid contribution -0.109 1.640 0.011 1.643 sum 3.484 -24.496 1.533 24.790 Atomic orbital electron populations 1.69809 1.06603 1.25949 1.59775 1.25529 0.96321 1.01013 1.04011 0.85193 0.77716 0.79767 0.77426 1.21351 1.19481 1.22537 1.19617 0.91429 0.85202 1.40611 0.90549 1.42653 1.05425 1.01026 1.88575 1.20424 0.94651 0.85063 0.93414 1.22439 0.99355 0.96119 0.99934 1.21533 0.94122 0.86578 0.98011 1.48271 1.53490 1.14626 1.17322 1.20893 0.78544 0.83101 0.86622 1.90664 1.54894 1.81098 1.19104 1.21310 0.98237 0.94685 0.97937 0.86905 1.21474 1.00060 0.95876 0.96932 1.21507 0.97287 0.97470 0.98654 1.22591 1.01207 0.97729 0.97887 1.21202 0.79520 0.90455 0.83479 1.92994 1.63986 1.85628 1.76033 1.93003 1.67929 1.81253 1.76852 1.22417 0.98654 0.97831 0.99447 1.21974 0.99610 0.97207 0.82189 1.22096 0.98568 0.94518 1.01879 0.94128 0.79712 0.93160 0.94264 0.92492 0.89901 0.90397 0.91414 0.90687 0.90690 0.88193 0.88198 0.87397 0.87558 0.88471 0.89090 0.87220 0.90066 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.12 13.06 21.65 0.28 -58.83 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 45.80 29.55 68.60 2.03 47.83 16 4 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 5 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 7 C -0.24 -12.86 9.93 84.03 0.83 -12.03 16 8 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -36.18 5.12 -322.82 -1.65 -37.83 16 10 C 0.17 6.38 2.73 45.02 0.12 6.50 16 11 C -0.14 -4.81 5.66 30.67 0.17 -4.63 16 12 C 0.12 3.39 6.44 86.37 0.56 3.95 16 13 N -0.61 -14.97 2.97 -818.91 -2.43 -17.40 16 14 C 0.52 12.88 6.83 87.66 0.60 13.48 16 15 O -0.58 -18.45 15.47 -3.04 -0.05 -18.50 16 16 C -0.10 -1.72 1.57 -11.54 -0.02 -1.74 16 17 H 0.11 1.76 5.88 -2.39 -0.01 1.75 16 18 C -0.11 -1.62 4.70 30.60 0.14 -1.47 16 19 C -0.11 -1.14 5.80 30.59 0.18 -0.97 16 20 C -0.16 -1.57 5.45 30.59 0.17 -1.40 16 21 C 0.29 4.20 2.10 30.59 0.06 4.27 16 22 F -0.21 -3.58 16.02 44.97 0.72 -2.86 16 23 F -0.21 -3.71 17.06 44.97 0.77 -2.94 16 24 C -0.15 -2.11 4.68 30.59 0.14 -1.97 16 25 C 0.11 2.36 5.94 86.36 0.51 2.87 16 26 C -0.13 -3.80 5.55 30.67 0.17 -3.62 16 27 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 28 H 0.37 19.77 7.80 -92.71 -0.72 19.05 16 29 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.08 2.35 7.00 -2.39 -0.02 2.33 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.24 7.88 -2.39 -0.02 1.22 16 36 H 0.07 0.81 7.80 -2.39 -0.02 0.79 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.10 1.35 7.78 -2.39 -0.02 1.34 16 42 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.11 1.77 5.42 -2.38 -0.01 1.76 16 44 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 45 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -68.52 356.80 4.05 -64.47 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.27 Total: 26.72 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 4.11 Total: -0.65 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -3.80 Total: -114.07 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.05 Total: -18.50 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 1.49 Total: -5.80 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -68.52 4.05 -64.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996998159.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.557 kcal (2) G-P(sol) polarization free energy of solvation -68.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds