Wall clock time and date at job start Tue Mar 31 2020 10:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48503 * 109.46969 * 269.99904 * 3 2 1 5 5 H 1.48500 * 109.47199 * 29.99854 * 3 2 1 6 6 H 1.48506 * 109.47365 * 150.00003 * 3 2 1 7 7 C 1.38813 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99663 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99958 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00095 * 180.02562 * 9 7 2 11 11 H 1.08995 * 109.49666 * 325.07075 * 10 9 7 12 12 C 1.53042 * 109.49676 * 85.16337 * 10 9 7 13 13 C 1.53038 * 109.53856 * 181.31832 * 12 10 9 14 14 C 1.53618 * 109.24352 * 298.51127 * 13 12 10 15 15 N 1.46924 * 108.54299 * 54.85410 * 14 13 12 16 16 C 1.34776 * 120.62981 * 126.37305 * 15 14 13 17 17 O 1.21282 * 119.99940 * 179.72426 * 16 15 14 18 18 C 1.50698 * 120.00035 * 359.71541 * 16 15 14 19 19 C 1.53006 * 109.47184 * 180.02562 * 18 16 15 20 20 H 1.09001 * 110.66586 * 51.76991 * 19 18 16 21 21 C 1.54885 * 110.75408 * 175.00184 * 19 18 16 22 22 C 1.54268 * 104.19410 * 156.25984 * 21 19 18 23 23 C 1.53876 * 106.60002 * 336.39014 * 22 21 19 24 24 F 1.39896 * 110.03453 * 119.28087 * 23 22 21 25 25 F 1.39893 * 110.03414 * 240.66921 * 23 22 21 26 26 C 1.54273 * 106.59650 * 359.97438 * 23 22 21 27 27 C 1.46929 * 118.73954 * 306.09484 * 15 14 13 28 28 H 0.97003 * 119.99739 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00061 * 0.02562 * 9 7 2 30 30 H 1.09004 * 109.46051 * 301.34028 * 12 10 9 31 31 H 1.08992 * 109.46221 * 61.31048 * 12 10 9 32 32 H 1.09004 * 109.49722 * 58.58921 * 13 12 10 33 33 H 1.09001 * 109.49831 * 178.64788 * 13 12 10 34 34 H 1.08999 * 109.73867 * 295.11853 * 14 13 12 35 35 H 1.08996 * 109.66983 * 174.55230 * 14 13 12 36 36 H 1.09001 * 109.46665 * 60.00498 * 18 16 15 37 37 H 1.08993 * 109.47304 * 300.00054 * 18 16 15 38 38 H 1.09001 * 110.48779 * 274.93523 * 21 19 18 39 39 H 1.08996 * 110.48714 * 37.58360 * 21 19 18 40 40 H 1.09004 * 110.03400 * 95.67216 * 22 21 19 41 41 H 1.08997 * 110.03181 * 217.10548 * 22 21 19 42 42 H 1.08994 * 110.48761 * 264.93344 * 26 23 22 43 43 H 1.09003 * 110.48430 * 142.28880 * 26 23 22 44 44 H 1.09003 * 109.58761 * 173.64672 * 27 15 14 45 45 H 1.08991 * 109.58780 * 293.93183 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9695 -3.5507 -0.5888 12 6 2.4188 -4.0383 1.4370 13 6 3.2125 -5.3468 1.4354 14 6 2.3430 -6.4657 0.8423 15 7 1.8769 -6.0415 -0.4849 16 6 2.0795 -6.8212 -1.5654 17 8 1.6855 -6.4621 -2.6548 18 6 2.7956 -8.1391 -1.4200 19 6 2.8931 -8.8201 -2.7866 20 1 3.3140 -8.1393 -3.5265 21 6 3.7332 -10.1181 -2.6944 22 6 3.2512 -10.9664 -3.8894 23 6 1.8357 -10.4726 -4.2365 24 9 1.8073 -9.9811 -5.5459 25 9 0.9161 -11.5175 -4.0971 26 6 1.5067 -9.3420 -3.2398 27 6 1.1803 -4.7540 -0.6108 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 3.0230 -3.2476 1.8819 31 1 1.5060 -4.1683 2.0182 32 1 4.1134 -5.2252 0.8339 33 1 3.4897 -5.6054 2.4574 34 1 1.4852 -6.6478 1.4898 35 1 2.9324 -7.3777 0.7484 36 1 2.2421 -8.7795 -0.7332 37 1 3.7980 -7.9667 -1.0281 38 1 4.7953 -9.8928 -2.7903 39 1 3.5351 -10.6348 -1.7553 40 1 3.9160 -10.8230 -4.7413 41 1 3.2215 -12.0199 -3.6115 42 1 0.9491 -9.7336 -2.3891 43 1 0.9442 -8.5497 -3.7338 44 1 1.0025 -4.5361 -1.6639 45 1 0.2287 -4.8001 -0.0815 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999328328.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:34 Heat of formation + Delta-G solvation = -143.651619 kcal Electronic energy + Delta-G solvation = -27043.825008 eV Core-core repulsion = 22924.165218 eV Total energy + Delta-G solvation = -4119.659789 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.07634 -47.14847 -40.22739 -38.12155 -36.96154 -34.52309 -32.32828 -31.63816 -31.07539 -28.99094 -28.36262 -26.33215 -24.77909 -23.64866 -22.08129 -21.27074 -20.99945 -19.98959 -18.80266 -17.76647 -17.28655 -17.21457 -16.71240 -16.36089 -15.60919 -15.36304 -14.85577 -14.68264 -14.46874 -14.09865 -13.97774 -13.91817 -13.59423 -13.49040 -13.39700 -13.19004 -12.96215 -12.73376 -12.38007 -12.29262 -12.06412 -11.89063 -11.62847 -11.37052 -11.14174 -10.99014 -10.96786 -10.92538 -10.82950 -10.66211 -10.43669 -10.38146 -10.10009 -9.76525 -9.57812 -8.93374 -8.42770 -7.01027 -5.79625 -3.09367 2.71025 3.05895 3.42257 3.47327 3.48777 3.52172 3.66686 3.91055 4.08506 4.42887 4.56664 4.65255 4.73993 4.83649 4.86366 4.91160 5.04920 5.09812 5.19217 5.24576 5.28904 5.33785 5.40060 5.48774 5.50841 5.54766 5.65081 5.68665 5.73114 5.78443 5.86507 5.99863 6.00285 6.13192 6.21730 6.35897 6.51948 6.67273 6.85113 7.01751 7.55224 7.67175 8.28145 8.38500 9.49508 10.04743 10.39646 11.42858 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.023182 B = 0.002598 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.551929 B =10776.992334 C =11351.513543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.722 5.722 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.107 3.893 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.539 6.539 18 C -0.131 4.131 19 C -0.075 4.075 20 H 0.097 0.903 21 C -0.118 4.118 22 C -0.163 4.163 23 C 0.279 3.721 24 F -0.198 7.198 25 F -0.203 7.203 26 C -0.155 4.155 27 C 0.106 3.894 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.092 0.908 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.855 -24.700 -0.483 25.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.016 4.016 15 N -0.339 5.339 16 C 0.297 3.703 17 O -0.417 6.417 18 C -0.171 4.171 19 C -0.094 4.094 20 H 0.115 0.885 21 C -0.155 4.155 22 C -0.201 4.201 23 C 0.243 3.757 24 F -0.179 7.179 25 F -0.184 7.184 26 C -0.193 4.193 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.111 0.889 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.721 -24.358 -1.110 25.577 hybrid contribution -0.005 0.917 0.068 0.919 sum 7.716 -23.442 -1.043 24.701 Atomic orbital electron populations 1.69663 1.05116 1.25756 1.57430 1.24753 0.95528 0.97725 1.02815 0.86187 0.78609 0.83784 0.77576 1.21650 1.21749 1.20767 1.19197 0.90953 0.83893 1.43013 0.91175 1.42315 1.05810 0.99539 1.88577 1.20466 0.94630 0.85996 0.93106 0.93267 1.22286 0.99599 0.95267 1.00682 1.22008 0.98764 0.96021 1.00420 1.21867 0.98376 0.97581 0.83781 1.48146 1.57639 1.20528 1.07637 1.20573 0.79833 0.85926 0.83984 1.90709 1.51359 1.73799 1.25810 1.21705 1.02217 0.94717 0.98460 1.21869 0.94345 0.96200 0.96969 0.88496 1.22432 1.00501 0.94962 0.97637 1.23159 0.93674 1.02040 1.01227 1.21896 0.89128 0.84580 0.80127 1.93025 1.97111 1.88139 1.39615 1.92999 1.69525 1.60149 1.95735 1.23447 0.99646 0.97202 0.99035 1.21996 0.94962 0.81438 1.03328 0.93435 0.78196 0.91579 0.92493 0.91842 0.91389 0.91353 0.90256 0.88713 0.88290 0.89973 0.90342 0.88749 0.88820 0.88795 0.87721 0.88926 0.91795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.84 5.12 -53.31 -0.27 -18.11 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.26 5.46 -26.69 -0.15 -2.41 16 13 C -0.13 -1.56 6.10 -26.39 -0.16 -1.72 16 14 C 0.11 1.08 6.37 -3.49 -0.02 1.06 16 15 N -0.61 -8.23 2.97 -172.51 -0.51 -8.74 16 16 C 0.51 6.82 7.53 -10.99 -0.08 6.74 16 17 O -0.54 -9.42 14.25 5.56 0.08 -9.34 16 18 C -0.13 -1.09 3.55 -27.88 -0.10 -1.18 16 19 C -0.07 -0.64 2.45 -88.61 -0.22 -0.86 16 20 H 0.10 1.01 7.88 -51.93 -0.41 0.60 16 21 C -0.12 -0.68 6.27 -25.07 -0.16 -0.84 16 22 C -0.16 -1.12 6.50 -25.61 -0.17 -1.29 16 23 C 0.28 2.80 2.57 -25.61 -0.07 2.74 16 24 F -0.20 -2.46 17.04 2.25 0.04 -2.42 16 25 F -0.20 -2.28 17.04 2.25 0.04 -2.24 16 26 C -0.16 -1.55 5.33 -25.06 -0.13 -1.68 16 27 C 0.11 1.82 5.90 -3.71 -0.02 1.80 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.38 10.09 7.80 -40.82 -0.32 9.78 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 36 H 0.09 0.59 7.78 -51.93 -0.40 0.18 16 37 H 0.10 0.64 7.70 -51.93 -0.40 0.24 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.35 8.05 -51.93 -0.42 -0.07 16 40 H 0.09 0.61 8.02 -51.93 -0.42 0.19 16 41 H 0.09 0.53 8.02 -51.93 -0.42 0.12 16 42 H 0.09 0.82 7.91 -51.93 -0.41 0.41 16 43 H 0.10 1.31 7.35 -51.93 -0.38 0.93 16 44 H 0.09 1.83 7.01 -51.93 -0.36 1.47 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.41 15.07 5.45 5.45 Total: -1.00 -32.60 361.41 -8.37 -40.97 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.17 Total: 6.15 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.72 Total: -1.72 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.06 Total: -54.14 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.08 Total: -4.66 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.60 -8.37 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999328328.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.684 kcal (2) G-P(sol) polarization free energy of solvation -32.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds