Wall clock time and date at job start Tue Mar 31 2020 10:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99979 * 2 1 4 4 H 1.48498 * 109.46947 * 269.99320 * 3 2 1 5 5 H 1.48498 * 109.47507 * 29.99480 * 3 2 1 6 6 H 1.48505 * 109.47155 * 150.00154 * 3 2 1 7 7 C 1.38813 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00544 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00395 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49833 * 325.05970 * 10 9 7 12 12 C 1.53042 * 109.52684 * 85.14843 * 10 9 7 13 13 C 1.53040 * 109.53871 * 181.33408 * 12 10 9 14 14 C 1.53627 * 109.24108 * 298.50936 * 13 12 10 15 15 N 1.46927 * 108.54183 * 54.85576 * 14 13 12 16 16 C 1.34777 * 120.62638 * 126.37295 * 15 14 13 17 17 O 1.21278 * 119.99854 * 179.72148 * 16 15 14 18 18 C 1.50703 * 120.00161 * 359.71455 * 16 15 14 19 19 C 1.53000 * 109.46912 * 180.02562 * 18 16 15 20 20 H 1.08998 * 110.43335 * 305.69612 * 19 18 16 21 21 C 1.54267 * 110.48479 * 183.16291 * 19 18 16 22 22 C 1.53876 * 106.59581 * 217.71070 * 21 19 18 23 23 C 1.54261 * 106.60087 * 359.97438 * 22 21 19 24 24 F 1.39897 * 110.48508 * 142.28875 * 23 22 21 25 25 F 1.39897 * 110.48456 * 264.80235 * 23 22 21 26 26 C 1.54879 * 110.48935 * 68.24231 * 19 18 16 27 27 C 1.46920 * 118.74032 * 306.09058 * 15 14 13 28 28 H 0.96999 * 119.99568 * 0.02562 * 1 2 3 29 29 H 0.97012 * 119.99785 * 0.02562 * 9 7 2 30 30 H 1.08995 * 109.45388 * 301.35190 * 12 10 9 31 31 H 1.08999 * 109.45952 * 61.31067 * 12 10 9 32 32 H 1.08999 * 109.49509 * 58.58265 * 13 12 10 33 33 H 1.08997 * 109.49597 * 178.64672 * 13 12 10 34 34 H 1.09005 * 109.73796 * 295.11763 * 14 13 12 35 35 H 1.08995 * 109.66320 * 174.54985 * 14 13 12 36 36 H 1.09002 * 109.47152 * 60.00245 * 18 16 15 37 37 H 1.09001 * 109.46980 * 300.00345 * 18 16 15 38 38 H 1.09003 * 110.03043 * 336.99383 * 21 19 18 39 39 H 1.08996 * 110.03454 * 98.37452 * 21 19 18 40 40 H 1.09007 * 110.03072 * 119.28890 * 22 21 19 41 41 H 1.09000 * 110.02907 * 240.65928 * 22 21 19 42 42 H 1.09000 * 110.75657 * 274.93309 * 26 19 18 43 43 H 1.09006 * 110.75796 * 38.30690 * 26 19 18 44 44 H 1.09001 * 109.58920 * 173.64838 * 27 15 14 45 45 H 1.09001 * 109.58884 * 293.93521 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0017 11 1 2.9698 -3.5510 -0.5861 12 6 2.4183 -4.0382 1.4394 13 6 3.2123 -5.3465 1.4382 14 6 2.3431 -6.4656 0.8448 15 7 1.8774 -6.0416 -0.4826 16 6 2.0805 -6.8214 -1.5630 17 8 1.6868 -6.4624 -2.6525 18 6 2.7969 -8.1392 -1.4171 19 6 2.8949 -8.8202 -2.7837 20 1 1.9073 -8.9097 -3.2360 21 6 3.5546 -10.2082 -2.6491 22 6 4.4472 -10.3927 -3.8888 23 6 4.2983 -9.1108 -4.7339 24 9 5.5234 -8.7596 -5.3108 25 9 3.3249 -9.2869 -5.7232 26 6 3.8485 -8.0318 -3.7152 27 6 1.1806 -4.7543 -0.6089 28 1 -0.4849 0.8401 -0.0004 29 1 0.3555 -2.3881 -0.0002 30 1 3.0222 -3.2473 1.8842 31 1 1.5052 -4.1680 2.0203 32 1 4.1132 -5.2247 0.8369 33 1 3.4892 -5.6049 2.4602 34 1 1.4851 -6.6478 1.4921 35 1 2.9328 -7.3774 0.7511 36 1 2.2433 -8.7796 -0.7305 37 1 3.7991 -7.9665 -1.0248 38 1 4.1603 -10.2475 -1.7437 39 1 2.7896 -10.9841 -2.6200 40 1 5.4861 -10.5216 -3.5851 41 1 4.1159 -11.2588 -4.4618 42 1 3.3173 -7.2224 -4.2161 43 1 4.7029 -7.6477 -3.1578 44 1 1.0032 -4.5365 -1.6621 45 1 0.2287 -4.8005 -0.0799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999328335.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:41 Heat of formation + Delta-G solvation = -142.957689 kcal Electronic energy + Delta-G solvation = -27179.716334 eV Core-core repulsion = 23060.086635 eV Total energy + Delta-G solvation = -4119.629698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.00008 -47.13267 -40.23646 -38.11755 -36.94789 -34.52234 -32.32578 -31.63570 -31.07205 -28.96227 -28.37301 -26.33923 -24.76856 -23.63605 -22.08155 -21.39382 -20.82034 -19.94435 -18.86299 -17.67293 -17.29573 -17.20676 -16.63559 -16.34387 -15.65973 -15.34445 -15.04804 -14.61698 -14.31715 -14.09030 -14.00568 -13.88427 -13.62279 -13.46810 -13.39617 -13.09630 -12.93340 -12.75697 -12.47775 -12.30457 -12.02388 -11.93618 -11.60221 -11.38612 -11.13005 -10.97581 -10.92346 -10.88375 -10.76052 -10.64700 -10.43187 -10.38012 -10.09427 -9.76084 -9.57336 -8.93177 -8.42558 -7.00855 -5.79461 -3.09178 2.71122 3.06092 3.42598 3.47758 3.49090 3.51270 3.68089 3.92655 4.11353 4.44035 4.57002 4.66288 4.76104 4.82975 4.86042 4.96186 5.05978 5.09363 5.20994 5.27045 5.30359 5.33038 5.40948 5.49173 5.50892 5.55567 5.67801 5.71206 5.73280 5.78306 5.89463 6.00186 6.02025 6.13253 6.21731 6.35894 6.52006 6.67364 6.85227 7.01778 7.55326 7.67484 8.28388 8.38697 9.49719 10.04901 10.39794 11.43030 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018345 B = 0.002835 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.971721 B = 9875.101794 C =10618.379838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.107 3.893 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.539 6.539 18 C -0.131 4.131 19 C -0.075 4.075 20 H 0.094 0.906 21 C -0.118 4.118 22 C -0.160 4.160 23 C 0.275 3.725 24 F -0.201 7.201 25 F -0.195 7.195 26 C -0.152 4.152 27 C 0.106 3.894 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -24.466 -0.336 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.016 4.016 15 N -0.340 5.340 16 C 0.297 3.703 17 O -0.416 6.416 18 C -0.171 4.171 19 C -0.094 4.094 20 H 0.112 0.888 21 C -0.156 4.156 22 C -0.198 4.198 23 C 0.239 3.761 24 F -0.182 7.182 25 F -0.176 7.176 26 C -0.190 4.190 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 8.277 -24.105 -0.969 25.505 hybrid contribution 0.220 1.033 0.018 1.057 sum 8.497 -23.072 -0.950 24.605 Atomic orbital electron populations 1.69663 1.05116 1.25755 1.57432 1.24751 0.95526 0.97721 1.02801 0.86187 0.78616 0.83775 0.77582 1.21647 1.21752 1.20757 1.19198 0.90959 0.83897 1.43022 0.91176 1.42311 1.05806 0.99535 1.88573 1.20468 0.94631 0.86001 0.93104 0.93284 1.22286 0.99594 0.95265 1.00687 1.22009 0.98763 0.96029 1.00417 1.21868 0.98377 0.97568 0.83782 1.48146 1.57641 1.20537 1.07629 1.20576 0.79796 0.85968 0.83987 1.90705 1.51352 1.73805 1.25774 1.21752 1.02094 0.94730 0.98534 1.21700 1.00177 0.93218 0.94336 0.88775 1.22189 0.98843 0.97239 0.97279 1.23105 1.03130 0.96314 0.97287 1.22051 0.73052 0.97527 0.83488 1.92995 1.44905 1.93368 1.86884 1.93012 1.63160 1.96329 1.65069 1.23575 1.01080 0.97747 0.96568 1.21997 0.94958 0.81438 1.03326 0.93439 0.78196 0.91585 0.92490 0.91857 0.91390 0.91341 0.90273 0.88470 0.88598 0.90295 0.90402 0.88619 0.89224 0.87607 0.88655 0.88927 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.72 -17.85 5.12 -53.31 -0.27 -18.12 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.26 5.47 -26.69 -0.15 -2.41 16 13 C -0.13 -1.56 6.10 -26.39 -0.16 -1.72 16 14 C 0.11 1.08 6.37 -3.48 -0.02 1.06 16 15 N -0.61 -8.22 2.97 -172.50 -0.51 -8.74 16 16 C 0.51 6.83 7.50 -10.98 -0.08 6.74 16 17 O -0.54 -9.41 14.02 5.56 0.08 -9.33 16 18 C -0.13 -1.09 3.40 -27.88 -0.09 -1.18 16 19 C -0.08 -0.66 2.45 -88.97 -0.22 -0.88 16 20 H 0.09 0.98 7.96 -51.93 -0.41 0.57 16 21 C -0.12 -0.69 6.38 -25.61 -0.16 -0.86 16 22 C -0.16 -1.11 6.41 -25.62 -0.16 -1.28 16 23 C 0.27 2.87 2.49 -24.99 -0.06 2.81 16 24 F -0.20 -2.39 17.16 2.25 0.04 -2.35 16 25 F -0.19 -2.45 17.17 2.25 0.04 -2.41 16 26 C -0.15 -1.60 5.29 -24.65 -0.13 -1.73 16 27 C 0.11 1.82 5.90 -3.71 -0.02 1.80 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.38 10.09 7.80 -40.81 -0.32 9.78 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.54 5.93 -51.93 -0.31 0.24 16 36 H 0.10 0.59 7.93 -51.93 -0.41 0.18 16 37 H 0.10 0.63 7.62 -51.93 -0.40 0.23 16 38 H 0.08 0.33 7.84 -51.93 -0.41 -0.07 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.10 0.54 8.11 -51.92 -0.42 0.12 16 41 H 0.09 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.11 1.41 7.17 -51.93 -0.37 1.04 16 43 H 0.09 0.90 8.00 -51.93 -0.42 0.48 16 44 H 0.09 1.83 7.01 -51.93 -0.36 1.47 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -32.62 361.18 -8.37 -40.98 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: -7.17 Total: 6.21 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -1.71 Total: -1.73 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.06 Total: -54.15 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.33 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.08 Total: -4.76 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.62 -8.37 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999328335.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.973 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds