Wall clock time and date at job start Tue Mar 31 2020 10:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99894 * 2 1 4 4 H 1.48499 * 109.46781 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47193 * 300.00205 * 3 2 1 6 6 H 1.48500 * 109.46745 * 60.00510 * 3 2 1 7 7 C 1.38816 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07989 * 119.99920 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99599 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99584 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.52736 * 34.91880 * 10 9 7 12 12 C 1.53043 * 109.49732 * 274.83427 * 10 9 7 13 13 C 1.53037 * 109.53919 * 178.68549 * 12 10 9 14 14 C 1.53191 * 109.31499 * 61.36673 * 13 12 10 15 15 N 1.46925 * 108.77423 * 305.36620 * 14 13 12 16 16 C 1.34779 * 120.63041 * 233.62788 * 15 14 13 17 17 O 1.21283 * 119.99742 * 179.97438 * 16 15 14 18 18 C 1.50696 * 120.00186 * 359.97438 * 16 15 14 19 19 C 1.52997 * 109.47364 * 179.97438 * 18 16 15 20 20 H 1.08998 * 110.67179 * 51.76560 * 19 18 16 21 21 C 1.54891 * 110.75514 * 175.00294 * 19 18 16 22 22 C 1.54271 * 104.19448 * 156.25841 * 21 19 18 23 23 C 1.53873 * 106.59805 * 336.38554 * 22 21 19 24 24 F 1.39897 * 110.03217 * 119.28458 * 23 22 21 25 25 F 1.39898 * 110.03363 * 240.71586 * 23 22 21 26 26 C 1.54271 * 106.59820 * 0.02562 * 23 22 21 27 27 C 1.46926 * 118.73914 * 53.60547 * 15 14 13 28 28 H 0.97000 * 120.00115 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00376 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.45405 * 58.66342 * 12 10 9 31 31 H 1.09002 * 109.44862 * 298.69964 * 12 10 9 32 32 H 1.08997 * 109.49928 * 301.41588 * 13 12 10 33 33 H 1.08998 * 109.49765 * 181.31916 * 13 12 10 34 34 H 1.08998 * 109.59071 * 185.58119 * 14 13 12 35 35 H 1.09005 * 109.58843 * 65.15147 * 14 13 12 36 36 H 1.08995 * 109.47063 * 300.00414 * 18 16 15 37 37 H 1.09006 * 109.47000 * 59.99630 * 18 16 15 38 38 H 1.09005 * 110.48483 * 274.93409 * 21 19 18 39 39 H 1.08991 * 110.49132 * 37.44545 * 21 19 18 40 40 H 1.09002 * 110.03278 * 95.67235 * 22 21 19 41 41 H 1.08996 * 110.03014 * 217.10137 * 22 21 19 42 42 H 1.08998 * 110.48465 * 264.93117 * 26 23 22 43 43 H 1.09005 * 110.48421 * 142.28823 * 26 23 22 44 44 H 1.09006 * 109.58406 * 66.18027 * 27 15 14 45 45 H 1.09002 * 109.59019 * 186.60016 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9697 -3.5511 0.5875 12 6 2.4188 -4.0383 -1.4381 13 6 3.2124 -5.3468 -1.4365 14 6 2.3478 -6.4632 -0.8425 15 7 1.8768 -6.0415 0.4838 16 6 2.0802 -6.8208 1.5645 17 8 1.6869 -6.4613 2.6540 18 6 2.7962 -8.1388 1.4191 19 6 2.8947 -8.8193 2.7858 20 1 1.9155 -8.8701 3.2619 21 6 3.5141 -10.2326 2.6520 22 6 4.1019 -10.5219 4.0487 23 6 4.3555 -9.1560 4.7104 24 9 3.6007 -9.0440 5.8829 25 9 5.7163 -9.0091 4.9999 26 6 3.9124 -8.0844 3.6929 27 6 1.1803 -4.7540 0.6097 28 1 -0.4850 0.8400 0.0004 29 1 0.3556 -2.3880 0.0002 30 1 3.0229 -3.2476 -1.8828 31 1 1.5057 -4.1681 -2.0191 32 1 4.1132 -5.2252 -0.8350 33 1 3.4891 -5.6057 -2.4585 34 1 2.9404 -7.3731 -0.7475 35 1 1.4924 -6.6479 -1.4923 36 1 2.2423 -8.7794 0.7329 37 1 3.7983 -7.9665 1.0262 38 1 2.7452 -10.9640 2.4027 39 1 4.3003 -10.2347 1.8971 40 1 3.3907 -11.0975 4.6412 41 1 5.0390 -11.0703 3.9531 42 1 4.7644 -7.7389 3.1074 43 1 3.4347 -7.2481 4.2034 44 1 0.2297 -4.7993 0.0783 45 1 1.0025 -4.5361 1.6629 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999328337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:45 Heat of formation + Delta-G solvation = -143.701653 kcal Electronic energy + Delta-G solvation = -27146.548116 eV Core-core repulsion = 23026.886157 eV Total energy + Delta-G solvation = -4119.661959 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.05044 -47.12572 -40.23146 -38.12102 -36.96534 -34.52668 -32.33073 -31.64563 -31.08233 -28.97496 -28.36234 -26.33096 -24.78019 -23.64771 -22.07975 -21.25770 -21.00835 -19.94870 -18.83814 -17.74099 -17.27837 -17.20807 -16.66502 -16.39666 -15.58529 -15.34535 -14.89693 -14.61532 -14.44545 -14.09923 -14.01386 -13.93860 -13.61537 -13.46658 -13.43347 -13.07958 -12.93593 -12.75513 -12.39482 -12.30187 -12.05010 -11.88029 -11.62713 -11.36182 -11.13554 -10.97705 -10.96871 -10.92966 -10.81327 -10.66640 -10.43674 -10.37528 -10.06711 -9.76934 -9.58233 -8.93791 -8.42899 -7.00926 -5.79694 -3.09372 2.70868 3.05971 3.42035 3.47897 3.49924 3.53818 3.68547 3.92307 4.10050 4.43254 4.56856 4.67025 4.73683 4.84352 4.86020 4.92665 5.05686 5.09999 5.20856 5.26522 5.28568 5.33626 5.39928 5.49465 5.50140 5.55281 5.67734 5.68272 5.73238 5.78515 5.88871 5.99437 6.01218 6.13034 6.21566 6.35782 6.51850 6.67249 6.85089 7.01644 7.55168 7.68005 8.28086 8.38406 9.49590 10.04723 10.39652 11.42846 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.002815 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.609017 B = 9944.060118 C =10675.779740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.134 4.134 14 C 0.107 3.893 15 N -0.606 5.606 16 C 0.509 3.491 17 O -0.539 6.539 18 C -0.131 4.131 19 C -0.074 4.074 20 H 0.096 0.904 21 C -0.118 4.118 22 C -0.163 4.163 23 C 0.279 3.721 24 F -0.198 7.198 25 F -0.203 7.203 26 C -0.156 4.156 27 C 0.106 3.894 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.887 -24.721 0.504 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.016 4.016 15 N -0.339 5.339 16 C 0.297 3.703 17 O -0.417 6.417 18 C -0.171 4.171 19 C -0.093 4.093 20 H 0.114 0.886 21 C -0.155 4.155 22 C -0.201 4.201 23 C 0.243 3.757 24 F -0.179 7.179 25 F -0.184 7.184 26 C -0.194 4.194 27 C -0.017 4.017 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.082 0.918 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.809 -24.359 1.148 25.606 hybrid contribution 0.264 1.069 -0.026 1.102 sum 8.073 -23.290 1.122 24.675 Atomic orbital electron populations 1.69667 1.05116 1.25643 1.57516 1.24752 0.95525 0.97724 1.02822 0.86120 0.78793 0.84083 0.77206 1.20542 1.21849 1.21801 1.19245 0.90992 0.83882 1.42883 0.91115 1.42318 1.05809 0.99544 1.88563 1.20474 0.94639 0.86017 0.93115 0.93284 1.22285 0.99591 0.95260 1.00681 1.21937 0.98820 0.96078 1.00440 1.21778 0.98364 0.97608 0.83823 1.48146 1.57523 1.20600 1.07673 1.20573 0.79771 0.85994 0.83971 1.90709 1.51382 1.73798 1.25782 1.21705 1.02139 0.94732 0.98533 1.21851 0.99815 0.93278 0.94391 0.88577 1.22429 1.00683 0.96812 0.95596 1.23154 1.04162 0.94752 0.98006 1.21889 0.72940 0.98514 0.82376 1.93023 1.75880 1.97231 1.51785 1.93004 1.33808 1.96959 1.94581 1.23449 1.00840 0.98014 0.97106 1.22000 0.94980 0.81430 1.03312 0.93488 0.78198 0.91579 0.92484 0.91876 0.91344 0.90272 0.91362 0.88409 0.88595 0.90044 0.90321 0.88775 0.88813 0.88726 0.87669 0.91774 0.88913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 7 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.85 5.12 -53.31 -0.27 -18.12 16 10 C 0.17 3.28 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.26 5.47 -26.69 -0.15 -2.40 16 13 C -0.13 -1.57 6.08 -26.61 -0.16 -1.73 16 14 C 0.11 1.09 6.34 -3.71 -0.02 1.06 16 15 N -0.61 -8.22 2.97 -172.77 -0.51 -8.74 16 16 C 0.51 6.82 7.53 -10.99 -0.08 6.74 16 17 O -0.54 -9.41 14.25 5.56 0.08 -9.34 16 18 C -0.13 -1.09 3.55 -27.89 -0.10 -1.19 16 19 C -0.07 -0.64 2.45 -88.64 -0.22 -0.86 16 20 H 0.10 0.98 7.88 -51.93 -0.41 0.57 16 21 C -0.12 -0.68 6.28 -25.07 -0.16 -0.83 16 22 C -0.16 -1.14 6.50 -25.61 -0.17 -1.30 16 23 C 0.28 2.89 2.57 -25.61 -0.07 2.83 16 24 F -0.20 -2.51 17.04 2.25 0.04 -2.47 16 25 F -0.20 -2.37 17.04 2.25 0.04 -2.33 16 26 C -0.16 -1.63 5.33 -25.08 -0.13 -1.76 16 27 C 0.11 1.82 5.90 -3.71 -0.02 1.80 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.55 5.93 -51.93 -0.31 0.24 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.10 0.58 7.94 -51.93 -0.41 0.17 16 37 H 0.10 0.64 7.53 -51.93 -0.39 0.25 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.35 8.05 -51.93 -0.42 -0.06 16 40 H 0.09 0.60 8.02 -51.93 -0.42 0.19 16 41 H 0.09 0.55 8.02 -51.93 -0.42 0.13 16 42 H 0.09 0.90 7.91 -51.93 -0.41 0.49 16 43 H 0.10 1.38 7.35 -51.93 -0.38 1.00 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 45 H 0.09 1.83 7.01 -51.93 -0.36 1.47 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -32.67 361.37 -8.37 -41.05 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.17 Total: 6.17 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.72 Total: -1.73 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.06 Total: -54.14 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.08 Total: -9.34 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.08 Total: -4.80 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -8.37 -41.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999328337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.656 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds