Wall clock time and date at job start Tue Mar 31 2020 10:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99642 * 2 1 4 4 H 1.48503 * 109.46965 * 269.99974 * 3 2 1 5 5 H 1.48504 * 109.47542 * 29.99615 * 3 2 1 6 6 H 1.48496 * 109.47177 * 150.00009 * 3 2 1 7 7 C 1.38802 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00367 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00171 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00434 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.52408 * 35.08139 * 10 9 7 12 12 C 1.53046 * 109.49607 * 275.00434 * 10 9 7 13 13 C 1.53046 * 109.53579 * 178.68262 * 12 10 9 14 14 C 1.53192 * 109.31128 * 61.36447 * 13 12 10 15 15 N 1.46921 * 108.77565 * 305.36180 * 14 13 12 16 16 C 1.34780 * 120.63025 * 233.63161 * 15 14 13 17 17 O 1.21280 * 119.99670 * 179.97438 * 16 15 14 18 18 C 1.50695 * 120.00093 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47542 * 179.97438 * 18 16 15 20 20 H 1.09001 * 110.01248 * 54.29267 * 19 18 16 21 21 C 1.54259 * 110.03700 * 175.69228 * 19 18 16 22 22 C 1.54891 * 104.20003 * 142.89583 * 21 19 18 23 23 C 1.54892 * 102.74540 * 322.05803 * 22 21 19 24 24 C 1.53878 * 110.03112 * 292.90979 * 19 18 16 25 25 F 1.39903 * 110.03174 * 359.97438 * 24 19 18 26 26 F 1.39898 * 110.03584 * 121.42625 * 24 19 18 27 27 C 1.46928 * 118.73936 * 53.61149 * 15 14 13 28 28 H 0.97003 * 120.00451 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99667 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.46296 * 58.66350 * 12 10 9 31 31 H 1.09000 * 109.45696 * 298.69906 * 12 10 9 32 32 H 1.09002 * 109.49423 * 181.31592 * 13 12 10 33 33 H 1.08995 * 109.49499 * 301.40973 * 13 12 10 34 34 H 1.08996 * 109.58717 * 65.15243 * 14 13 12 35 35 H 1.09001 * 109.58353 * 185.43241 * 14 13 12 36 36 H 1.08999 * 109.47341 * 299.99790 * 18 16 15 37 37 H 1.09006 * 109.47368 * 59.99758 * 18 16 15 38 38 H 1.09008 * 110.48284 * 261.57137 * 21 19 18 39 39 H 1.08997 * 110.48848 * 24.08228 * 21 19 18 40 40 H 1.08998 * 110.75903 * 80.36911 * 22 21 19 41 41 H 1.09001 * 110.75837 * 203.56038 * 22 21 19 42 42 H 1.08995 * 110.48786 * 156.61910 * 23 22 21 43 43 H 1.09002 * 110.48391 * 279.26566 * 23 22 21 44 44 H 1.09000 * 109.58351 * 66.18158 * 27 15 14 45 45 H 1.08999 * 109.58293 * 186.60368 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4475 2.6528 0.7000 6 1 3.5476 1.4403 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4707 0.0000 11 1 3.5661 -3.2067 -0.5901 12 6 4.2592 -2.9756 1.4373 13 6 4.9956 -4.3173 1.4356 14 6 6.3960 -4.1257 0.8447 15 7 6.2691 -3.5054 -0.4810 16 6 6.8446 -4.0699 -1.5612 17 8 6.7321 -3.5482 -2.6503 18 6 7.6268 -5.3497 -1.4159 19 6 8.1700 -5.7735 -2.7820 20 1 8.7408 -4.9578 -3.2258 21 6 9.0625 -7.0226 -2.6315 22 6 8.7589 -7.8612 -3.8979 23 6 7.2369 -7.6492 -4.0915 24 6 7.0091 -6.1706 -3.7106 25 9 5.7894 -6.0310 -3.0397 26 9 7.0194 -5.3720 -4.8592 27 6 5.5025 -2.2583 -0.6071 28 1 -0.4851 0.8400 -0.0004 29 1 3.8646 -0.3620 -0.0004 30 1 3.2715 -3.1042 1.8798 31 1 4.8268 -2.2506 2.0206 32 1 5.0793 -4.6875 2.4573 33 1 4.4412 -5.0358 0.8320 34 1 6.9822 -3.4781 1.4966 35 1 6.8889 -5.0935 0.7520 36 1 8.4571 -5.1919 -0.7275 37 1 6.9751 -6.1316 -1.0259 38 1 10.1146 -6.7388 -2.6051 39 1 8.7950 -7.5765 -1.7317 40 1 9.3140 -7.4808 -4.7554 41 1 8.9867 -8.9136 -3.7282 42 1 6.9566 -7.8226 -5.1304 43 1 6.6730 -8.3055 -3.4285 44 1 6.0159 -1.4584 -0.0736 45 1 5.4050 -1.9943 -1.6601 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000013093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:30 Heat of formation + Delta-G solvation = -132.262141 kcal Electronic energy + Delta-G solvation = -28069.228869 eV Core-core repulsion = 23950.062965 eV Total energy + Delta-G solvation = -4119.165905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.80109 -46.85690 -40.12085 -38.02050 -37.09114 -34.61999 -32.40857 -31.94227 -31.31406 -28.99019 -28.14075 -26.46783 -24.76978 -23.44167 -21.94503 -21.61979 -20.71434 -19.95880 -18.85102 -17.74412 -17.61333 -17.20188 -16.73660 -16.16419 -15.71403 -15.24030 -14.70247 -14.58355 -14.25383 -14.16293 -14.02712 -13.82836 -13.64617 -13.31443 -13.24245 -12.94027 -12.88393 -12.72431 -12.44799 -12.30475 -11.98123 -11.86210 -11.63257 -11.60213 -11.31168 -11.10945 -11.06198 -10.98475 -10.66529 -10.61905 -10.48082 -10.38880 -10.07094 -9.64257 -9.56491 -8.91472 -8.42885 -7.27284 -5.75554 -3.11972 2.74942 3.05768 3.39451 3.43072 3.47493 3.61959 3.72842 3.98082 4.09060 4.49443 4.60726 4.63097 4.71541 4.84277 4.86817 4.99341 5.04417 5.09104 5.14197 5.25317 5.27273 5.33152 5.37131 5.42707 5.48302 5.51670 5.54301 5.57366 5.69178 5.73857 5.75291 5.87565 5.94462 6.07368 6.13357 6.33851 6.47411 6.63207 6.82280 6.97590 7.54717 7.99697 8.30951 8.42949 9.20655 9.93062 10.12099 11.42654 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021534 B = 0.003358 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.939569 B = 8336.410134 C = 8802.488139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.745 5.745 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.137 4.137 13 C -0.134 4.134 14 C 0.108 3.892 15 N -0.606 5.606 16 C 0.513 3.487 17 O -0.534 6.534 18 C -0.133 4.133 19 C -0.118 4.118 20 H 0.107 0.893 21 C -0.118 4.118 22 C -0.122 4.122 23 C -0.165 4.165 24 C 0.293 3.707 25 F -0.194 7.194 26 F -0.191 7.191 27 C 0.104 3.896 28 H 0.260 0.740 29 H 0.361 0.639 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.454 -18.512 -1.366 29.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.388 5.388 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.177 4.177 13 C -0.173 4.173 14 C -0.015 4.015 15 N -0.339 5.339 16 C 0.300 3.700 17 O -0.410 6.410 18 C -0.173 4.173 19 C -0.138 4.138 20 H 0.125 0.875 21 C -0.156 4.156 22 C -0.160 4.160 23 C -0.203 4.203 24 C 0.257 3.743 25 F -0.175 7.175 26 F -0.172 7.172 27 C -0.019 4.019 28 H 0.070 0.930 29 H 0.194 0.806 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 22.090 -18.243 -1.981 28.718 hybrid contribution 0.233 1.414 0.171 1.444 sum 22.323 -16.828 -1.809 28.014 Atomic orbital electron populations 1.69701 1.05103 1.25844 1.57462 1.24660 0.95231 0.97204 1.01934 0.86553 0.79151 0.84959 0.77883 1.20974 1.21745 1.20331 1.19040 0.80313 0.94753 1.43101 0.89178 1.42672 1.04091 1.01730 1.90282 1.20453 0.90127 0.89630 0.93558 0.92299 1.22238 1.00594 0.94736 1.00174 1.21933 0.95327 0.99432 1.00578 1.21766 0.98138 0.97858 0.83762 1.48029 1.52347 1.25841 1.07728 1.20447 0.79681 0.85822 0.84022 1.90744 1.60698 1.64035 1.25560 1.21726 1.00871 0.96894 0.97831 1.22623 0.95754 1.00330 0.95096 0.87457 1.22436 0.99775 0.94584 0.98791 1.22457 0.94154 1.00983 0.98377 1.23424 0.98902 0.93500 1.04520 1.21596 0.82180 0.90300 0.80259 1.93013 1.47349 1.96654 1.80451 1.93029 1.96618 1.76324 1.51195 1.21972 0.92084 0.84518 1.03305 0.93037 0.80627 0.91101 0.92630 0.91215 0.91597 0.91451 0.90291 0.88073 0.88012 0.90095 0.90288 0.90460 0.89960 0.89026 0.88480 0.92034 0.88841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.72 13.97 55.49 0.78 -28.95 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 22.49 27.73 -169.99 -4.71 17.77 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 7 C -0.24 -6.94 10.41 -15.06 -0.16 -7.09 16 8 H 0.09 2.77 8.06 -52.48 -0.42 2.35 16 9 N -0.75 -17.97 4.93 -53.31 -0.26 -18.23 16 10 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 C -0.14 -2.29 5.47 -26.68 -0.15 -2.44 16 13 C -0.13 -1.65 6.08 -26.61 -0.16 -1.81 16 14 C 0.11 1.15 6.34 -3.71 -0.02 1.13 16 15 N -0.61 -8.72 2.97 -172.78 -0.51 -9.23 16 16 C 0.51 7.56 6.57 -10.99 -0.07 7.49 16 17 O -0.53 -10.14 13.91 5.56 0.08 -10.06 16 18 C -0.13 -1.28 2.98 -27.89 -0.08 -1.36 16 19 C -0.12 -1.14 2.40 -89.50 -0.21 -1.35 16 20 H 0.11 1.17 7.82 -51.93 -0.41 0.76 16 21 C -0.12 -0.67 6.36 -25.08 -0.16 -0.83 16 22 C -0.12 -0.68 6.91 -24.74 -0.17 -0.85 16 23 C -0.17 -1.32 6.41 -25.02 -0.16 -1.48 16 24 C 0.29 3.55 1.79 -25.56 -0.05 3.51 16 25 F -0.19 -2.93 14.04 2.25 0.03 -2.90 16 26 F -0.19 -2.94 16.74 2.25 0.04 -2.90 16 27 C 0.10 1.82 5.90 -3.71 -0.02 1.80 16 28 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 29 H 0.36 8.53 5.66 -40.82 -0.23 8.30 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.60 5.95 -51.93 -0.31 0.29 16 36 H 0.10 0.67 7.94 -51.93 -0.41 0.26 16 37 H 0.10 0.86 7.22 -51.93 -0.37 0.49 16 38 H 0.08 0.36 8.14 -51.92 -0.42 -0.07 16 39 H 0.08 0.34 7.85 -51.93 -0.41 -0.06 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.71 8.11 -51.93 -0.42 0.29 16 43 H 0.10 0.67 8.12 -51.93 -0.42 0.25 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.09 1.86 7.00 -51.93 -0.36 1.50 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -35.58 354.47 -8.10 -43.68 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -7.16 Total: 5.47 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.71 Total: 0.01 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 0.00 Total: -56.41 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.07 Total: -5.80 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.58 -8.10 -43.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000013093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.584 kcal (2) G-P(sol) polarization free energy of solvation -35.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds