Wall clock time and date at job start Tue Mar 31 2020 10:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48500 * 109.47011 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47645 * 300.00250 * 3 2 1 6 6 H 1.48501 * 109.46798 * 60.00482 * 3 2 1 7 7 C 1.38813 * 120.00367 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00198 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99340 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99625 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.50342 * 324.93459 * 10 9 7 12 12 C 1.53045 * 109.50127 * 84.99918 * 10 9 7 13 13 C 1.53041 * 109.54147 * 181.34833 * 12 10 9 14 14 C 1.53187 * 109.30879 * 298.63522 * 13 12 10 15 15 N 1.46928 * 108.77997 * 54.63703 * 14 13 12 16 16 C 1.34774 * 120.63149 * 126.36104 * 15 14 13 17 17 O 1.21283 * 119.99825 * 185.40957 * 16 15 14 18 18 C 1.50697 * 119.99996 * 5.41993 * 16 15 14 19 19 H 1.08996 * 109.47501 * 25.30014 * 18 16 15 20 20 C 1.53005 * 109.46826 * 265.29973 * 18 16 15 21 21 C 1.53004 * 109.47156 * 180.02562 * 20 18 16 22 22 C 1.52998 * 109.47064 * 59.99842 * 21 20 18 23 23 C 1.52995 * 109.47610 * 300.00084 * 22 21 20 24 24 F 1.39900 * 109.47400 * 300.00430 * 23 22 21 25 25 F 1.39904 * 109.47618 * 180.02562 * 23 22 21 26 26 C 1.53003 * 109.47323 * 145.30461 * 18 16 15 27 27 C 1.46925 * 118.73552 * 306.64303 * 15 14 13 28 28 H 0.96996 * 119.99622 * 359.97438 * 1 2 3 29 29 H 0.96990 * 120.00214 * 359.97438 * 9 7 2 30 30 H 1.08995 * 109.45852 * 61.32471 * 12 10 9 31 31 H 1.09000 * 109.45862 * 301.36891 * 12 10 9 32 32 H 1.08991 * 109.49613 * 178.68170 * 13 12 10 33 33 H 1.09000 * 109.49672 * 58.58878 * 13 12 10 34 34 H 1.08994 * 109.58959 * 294.84298 * 14 13 12 35 35 H 1.09011 * 109.58142 * 174.42320 * 14 13 12 36 36 H 1.08996 * 109.47114 * 300.00278 * 20 18 16 37 37 H 1.08997 * 109.47128 * 60.00138 * 20 18 16 38 38 H 1.09004 * 109.46581 * 300.00232 * 21 20 18 39 39 H 1.08992 * 109.47073 * 180.02562 * 21 20 18 40 40 H 1.09004 * 109.47143 * 179.97438 * 22 21 20 41 41 H 1.09003 * 109.47334 * 60.00213 * 22 21 20 42 42 H 1.09001 * 109.47090 * 299.99744 * 26 18 16 43 43 H 1.08996 * 109.47198 * 59.99367 * 26 18 16 44 44 H 1.09004 * 109.58623 * 173.14490 * 27 15 14 45 45 H 1.09001 * 109.58441 * 293.56751 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3966 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 2.9683 -3.5514 -0.5908 12 6 2.4224 -4.0363 1.4366 13 6 3.2168 -5.3444 1.4349 14 6 2.3513 -6.4618 0.8443 15 7 1.8770 -6.0422 -0.4815 16 6 2.0783 -6.8227 -1.5616 17 8 1.7705 -6.4229 -2.6645 18 6 2.6857 -8.1922 -1.3989 19 1 2.4870 -8.5607 -0.3925 20 6 4.1970 -8.1097 -1.6227 21 6 4.8136 -9.5003 -1.4581 22 6 4.1978 -10.4557 -2.4823 23 6 2.6866 -10.5382 -2.2586 24 9 2.4315 -11.0115 -0.9671 25 9 2.1236 -11.4123 -3.1947 26 6 2.0700 -9.1481 -2.4228 27 6 1.1845 -4.7526 -0.6083 28 1 -0.4849 0.8400 0.0004 29 1 0.3557 -2.3880 0.0002 30 1 1.5110 -4.1657 2.0202 31 1 3.0273 -3.2447 1.8790 32 1 3.4960 -5.6018 2.4565 33 1 4.1162 -5.2230 0.8311 34 1 1.4976 -6.6462 1.4964 35 1 2.9442 -7.3716 0.7492 36 1 4.3957 -7.7413 -2.6291 37 1 4.6356 -7.4288 -0.8933 38 1 4.6149 -9.8691 -0.4518 39 1 5.8903 -9.4414 -1.6171 40 1 4.6375 -11.4462 -2.3654 41 1 4.3965 -10.0869 -3.4886 42 1 0.9933 -9.2069 -2.2634 43 1 2.2687 -8.7797 -3.4292 44 1 1.0076 -4.5349 -1.6617 45 1 0.2336 -4.7947 -0.0771 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000165478.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:09 Heat of formation + Delta-G solvation = -143.260743 kcal Electronic energy + Delta-G solvation = -27717.320877 eV Core-core repulsion = 23597.678038 eV Total energy + Delta-G solvation = -4119.642840 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.23878 -47.22124 -40.47987 -37.99262 -36.89807 -34.54037 -32.34239 -31.72456 -31.19786 -30.33644 -28.35761 -25.61972 -24.29489 -23.28306 -23.11455 -22.09959 -20.75746 -19.98090 -18.87760 -17.76680 -17.33126 -17.21613 -16.79294 -16.27523 -15.60889 -15.30177 -15.08131 -14.73207 -14.31016 -14.13510 -14.03146 -13.82096 -13.55724 -13.51091 -13.33503 -13.24433 -12.99870 -12.92991 -12.71480 -12.55030 -12.26244 -12.10524 -11.58167 -11.28731 -11.19947 -11.03746 -10.96159 -10.93591 -10.77752 -10.63679 -10.44521 -10.37885 -10.07485 -9.76826 -9.55280 -8.94261 -8.45637 -7.01579 -5.80248 -3.09999 2.60306 2.94697 3.41399 3.46779 3.47965 3.49303 3.76489 3.94995 4.03016 4.42256 4.48801 4.56190 4.64700 4.68817 4.77167 4.88437 4.98604 5.06074 5.12507 5.25143 5.34898 5.40372 5.46724 5.48908 5.53964 5.57677 5.59949 5.65546 5.71684 5.73721 5.77882 5.90093 6.00185 6.11660 6.20942 6.35357 6.51036 6.65467 6.84221 7.01129 7.50691 7.67357 8.21803 8.37756 9.48989 10.04027 10.38987 11.42294 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002806 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.754287 B = 9977.045512 C =10168.267891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.138 4.138 13 C -0.133 4.133 14 C 0.104 3.896 15 N -0.602 5.602 16 C 0.520 3.480 17 O -0.539 6.539 18 C -0.106 4.106 19 H 0.101 0.899 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.159 4.159 23 C 0.291 3.709 24 F -0.200 7.200 25 F -0.201 7.201 26 C -0.143 4.143 27 C 0.105 3.895 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.058 -23.390 -0.072 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.171 4.171 14 C -0.019 4.019 15 N -0.335 5.335 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.128 4.128 19 H 0.119 0.881 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.197 4.197 23 C 0.255 3.745 24 F -0.181 7.181 25 F -0.182 7.182 26 C -0.181 4.181 27 C -0.018 4.018 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.973 -23.039 -0.671 24.733 hybrid contribution -0.048 0.826 0.239 0.861 sum 8.925 -22.212 -0.431 23.942 Atomic orbital electron populations 1.69670 1.05115 1.25644 1.57504 1.24754 0.95527 0.97725 1.02823 0.86118 0.78780 0.84080 0.77205 1.20545 1.21813 1.21849 1.19245 0.90992 0.83863 1.42890 0.91103 1.42315 1.05807 0.99524 1.88580 1.20380 0.94675 0.86025 0.93152 0.93261 1.22289 0.99629 0.95263 1.00657 1.21930 0.98757 0.95968 1.00487 1.21857 0.98517 0.97799 0.83749 1.48111 1.57294 1.20411 1.07662 1.20277 0.78541 0.86245 0.84247 1.90711 1.51712 1.74302 1.24846 1.21294 0.96962 0.93243 1.01254 0.88050 1.21589 0.92039 0.97632 1.04008 1.21507 1.00689 0.93882 0.99259 1.22551 0.91571 1.02768 1.02835 1.21059 0.94406 0.87038 0.72022 1.92992 1.95467 1.90093 1.39549 1.93015 1.87239 1.72148 1.65787 1.22353 1.01914 0.91051 1.02767 1.21936 0.95095 0.81350 1.03385 0.93485 0.78196 0.92448 0.91526 0.91248 0.91848 0.91259 0.90053 0.90304 0.90199 0.90604 0.89879 0.89368 0.88502 0.89158 0.87394 0.88873 0.91631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.72 -17.79 5.12 -53.52 -0.27 -18.06 16 10 C 0.17 3.28 2.90 -68.03 -0.20 3.08 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.27 5.47 -26.69 -0.15 -2.41 16 13 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 14 C 0.10 1.11 6.15 -3.71 -0.02 1.09 16 15 N -0.60 -8.42 2.98 -173.03 -0.52 -8.94 16 16 C 0.52 7.31 6.69 -10.99 -0.07 7.24 16 17 O -0.54 -9.70 15.68 5.56 0.09 -9.62 16 18 C -0.11 -1.04 1.60 -91.77 -0.15 -1.19 16 19 H 0.10 0.87 5.85 -51.93 -0.30 0.56 16 20 C -0.11 -0.92 5.10 -26.73 -0.14 -1.05 16 21 C -0.12 -0.69 5.80 -26.73 -0.16 -0.85 16 22 C -0.16 -1.05 5.45 -26.73 -0.15 -1.20 16 23 C 0.29 2.65 2.10 -26.76 -0.06 2.59 16 24 F -0.20 -2.02 16.02 2.25 0.04 -1.98 16 25 F -0.20 -2.16 17.06 2.25 0.04 -2.12 16 26 C -0.14 -1.41 4.39 -26.75 -0.12 -1.53 16 27 C 0.10 1.82 5.89 -3.93 -0.02 1.80 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.38 10.06 7.80 -40.82 -0.32 9.75 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.65 5.43 -51.92 -0.28 0.37 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 38 H 0.08 0.44 7.80 -51.93 -0.41 0.04 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.11 1.12 7.86 -51.93 -0.41 0.71 16 44 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 45 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -32.01 357.39 -8.28 -40.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.11 Total: 6.31 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.63 Total: -1.30 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -0.07 Total: -54.20 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.01 -8.28 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000165478.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.971 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds