Wall clock time and date at job start Tue Mar 31 2020 10:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99812 * 2 1 4 4 H 1.48507 * 109.46723 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47182 * 299.99700 * 3 2 1 6 6 H 1.48493 * 109.47031 * 60.00333 * 3 2 1 7 7 C 1.38809 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.46505 * 120.00069 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49218 * 35.06941 * 10 9 7 12 12 C 1.53038 * 109.49814 * 275.00582 * 10 9 7 13 13 C 1.53040 * 109.53692 * 178.68214 * 12 10 9 14 14 C 1.53199 * 109.31249 * 61.36234 * 13 12 10 15 15 N 1.46922 * 108.77336 * 305.36821 * 14 13 12 16 16 C 1.34777 * 120.62676 * 233.62846 * 15 14 13 17 17 O 1.21286 * 120.00256 * 174.58303 * 16 15 14 18 18 C 1.50703 * 120.00337 * 354.59022 * 16 15 14 19 19 H 1.09003 * 109.46577 * 334.68894 * 18 16 15 20 20 C 1.52998 * 109.47507 * 94.68822 * 18 16 15 21 21 C 1.53003 * 109.47195 * 180.02562 * 20 18 16 22 22 C 1.52999 * 109.47140 * 300.00402 * 21 20 18 23 23 C 1.52998 * 109.47302 * 60.00108 * 22 21 20 24 24 F 1.39892 * 109.47022 * 180.02562 * 23 22 21 25 25 F 1.39904 * 109.47213 * 59.99682 * 23 22 21 26 26 C 1.52997 * 109.47372 * 214.69611 * 18 16 15 27 27 C 1.46927 * 118.74273 * 53.60631 * 15 14 13 28 28 H 0.97001 * 120.00009 * 359.97438 * 1 2 3 29 29 H 0.96996 * 120.00179 * 0.02562 * 9 7 2 30 30 H 1.08992 * 109.46260 * 58.65983 * 12 10 9 31 31 H 1.09004 * 109.44790 * 298.69108 * 12 10 9 32 32 H 1.08995 * 109.49999 * 301.41040 * 13 12 10 33 33 H 1.09000 * 109.49839 * 181.31015 * 13 12 10 34 34 H 1.09006 * 109.58248 * 65.15341 * 14 13 12 35 35 H 1.09000 * 109.58761 * 185.57846 * 14 13 12 36 36 H 1.09000 * 109.46842 * 300.00465 * 20 18 16 37 37 H 1.08999 * 109.46747 * 60.00121 * 20 18 16 38 38 H 1.09003 * 109.46809 * 179.97438 * 21 20 18 39 39 H 1.09003 * 109.46617 * 60.00616 * 21 20 18 40 40 H 1.08999 * 109.46973 * 300.00105 * 22 21 20 41 41 H 1.08998 * 109.46696 * 180.02562 * 22 21 20 42 42 H 1.09003 * 109.46684 * 299.99218 * 26 18 16 43 43 H 1.08998 * 109.47216 * 59.99409 * 26 18 16 44 44 H 1.09004 * 109.58295 * 186.60255 * 27 15 14 45 45 H 1.08997 * 109.58354 * 66.18189 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 1 2.9687 -3.5516 0.5880 12 6 2.4214 -4.0357 -1.4392 13 6 3.2151 -5.3441 -1.4387 14 6 2.3493 -6.4616 -0.8482 15 7 1.8760 -6.0424 0.4780 16 6 2.0774 -6.8237 1.5575 17 8 1.7707 -6.4243 2.6609 18 6 2.6841 -8.1935 1.3938 19 1 2.4845 -8.5612 0.3873 20 6 4.1955 -8.1119 1.6166 21 6 4.8114 -9.5026 1.4498 22 6 4.1959 -10.4591 2.4730 23 6 2.6844 -10.5407 2.2501 24 9 2.1216 -11.4148 3.1861 25 9 2.4283 -11.0121 0.9580 26 6 2.0684 -9.1496 2.4174 27 6 1.1792 -4.7551 0.6050 28 1 -0.4850 0.8401 0.0004 29 1 0.3556 -2.3881 -0.0005 30 1 3.0263 -3.2442 -1.8815 31 1 1.5093 -4.1645 -2.0222 32 1 4.1148 -5.2237 -0.8354 33 1 3.4935 -5.6012 -2.4607 34 1 1.4951 -6.6451 -1.5000 35 1 2.9417 -7.3717 -0.7539 36 1 4.6340 -7.4308 0.8873 37 1 4.3950 -7.7442 2.6231 38 1 5.8883 -9.4443 1.6081 39 1 4.6119 -9.8698 0.4430 40 1 4.3954 -10.0917 3.4796 41 1 4.6350 -11.4496 2.3543 42 1 2.2680 -8.7819 3.4239 43 1 0.9917 -9.2077 2.2586 44 1 0.9996 -4.5393 1.6583 45 1 0.2296 -4.7994 0.0719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000165481.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:13 Heat of formation + Delta-G solvation = -143.326572 kcal Electronic energy + Delta-G solvation = -27716.193017 eV Core-core repulsion = 23596.547322 eV Total energy + Delta-G solvation = -4119.645694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.23714 -47.22381 -40.47526 -37.98157 -36.89389 -34.53554 -32.34056 -31.72296 -31.18887 -30.33152 -28.34783 -25.61810 -24.29015 -23.28063 -23.11434 -22.09943 -20.75423 -19.98011 -18.87834 -17.76529 -17.33149 -17.21569 -16.79185 -16.27527 -15.60971 -15.29907 -15.08067 -14.73001 -14.31056 -14.13534 -14.02705 -13.81989 -13.55743 -13.50662 -13.33515 -13.24044 -12.99771 -12.93122 -12.71428 -12.55023 -12.25757 -12.10390 -11.58168 -11.28698 -11.19826 -11.03806 -10.96436 -10.93498 -10.77679 -10.63657 -10.44580 -10.38028 -10.07362 -9.76668 -9.55253 -8.94249 -8.45381 -7.01411 -5.80163 -3.09911 2.60344 2.94842 3.41454 3.46738 3.47892 3.49332 3.76298 3.95128 4.03062 4.42293 4.48821 4.56275 4.64716 4.68871 4.77226 4.88491 4.98635 5.06161 5.12543 5.25268 5.34906 5.40371 5.46781 5.48972 5.53533 5.57710 5.60003 5.65621 5.71624 5.73598 5.77588 5.90107 6.00331 6.11563 6.20907 6.35314 6.51035 6.65517 6.84029 7.01143 7.50728 7.67308 8.21845 8.37824 9.49036 10.04118 10.39089 11.42367 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.028425 B = 0.002806 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.796278 B = 9977.218177 C =10168.494251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.071 0.929 9 N -0.722 5.722 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.138 4.138 13 C -0.132 4.132 14 C 0.104 3.896 15 N -0.602 5.602 16 C 0.520 3.480 17 O -0.539 6.539 18 C -0.106 4.106 19 H 0.101 0.899 20 C -0.115 4.115 21 C -0.116 4.116 22 C -0.159 4.159 23 C 0.291 3.709 24 F -0.201 7.201 25 F -0.200 7.200 26 C -0.142 4.142 27 C 0.105 3.895 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.044 -23.399 0.056 25.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.370 4.370 8 H 0.089 0.911 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.171 4.171 14 C -0.019 4.019 15 N -0.335 5.335 16 C 0.307 3.693 17 O -0.416 6.416 18 C -0.128 4.128 19 H 0.119 0.881 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.197 4.197 23 C 0.255 3.745 24 F -0.182 7.182 25 F -0.181 7.181 26 C -0.181 4.181 27 C -0.018 4.018 28 H 0.065 0.935 29 H 0.218 0.782 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.962 -23.047 0.654 24.737 hybrid contribution -0.051 0.824 -0.240 0.860 sum 8.911 -22.223 0.414 23.947 Atomic orbital electron populations 1.69674 1.05111 1.25641 1.57517 1.24754 0.95529 0.97726 1.02831 0.86116 0.78777 0.84079 0.77204 1.20546 1.21856 1.21808 1.19245 0.90990 0.83871 1.42873 0.91110 1.42321 1.05812 0.99539 1.88572 1.20467 0.94625 0.85970 0.93137 0.93227 1.22289 0.99630 0.95260 1.00660 1.21932 0.98758 0.95965 1.00478 1.21858 0.98525 0.97802 0.83733 1.48114 1.57200 1.20521 1.07664 1.20282 0.78540 0.86234 0.84263 1.90712 1.51737 1.74327 1.24798 1.21297 0.96971 0.93246 1.01257 0.88056 1.21588 0.92039 0.97631 1.04006 1.21509 1.00693 0.93875 0.99263 1.22550 0.91568 1.02760 1.02843 1.21077 0.94399 0.87046 0.72022 1.93012 1.87245 1.72152 1.65777 1.92992 1.95454 1.90147 1.39495 1.22371 1.01910 0.91027 1.02758 1.22029 0.95004 0.81365 1.03377 0.93489 0.78198 0.91526 0.92449 0.91847 0.91254 0.91269 0.90051 0.90205 0.90299 0.89881 0.90605 0.88502 0.89372 0.87384 0.89166 0.88872 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 8 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 9 N -0.72 -17.79 5.12 -53.31 -0.27 -18.07 16 10 C 0.17 3.29 2.92 -67.81 -0.20 3.09 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.14 -2.27 5.47 -26.69 -0.15 -2.41 16 13 C -0.13 -1.57 6.08 -26.61 -0.16 -1.74 16 14 C 0.10 1.11 6.15 -3.71 -0.02 1.09 16 15 N -0.60 -8.42 2.97 -172.77 -0.51 -8.94 16 16 C 0.52 7.31 6.69 -10.98 -0.07 7.23 16 17 O -0.54 -9.70 15.69 5.55 0.09 -9.62 16 18 C -0.11 -1.04 1.60 -91.77 -0.15 -1.19 16 19 H 0.10 0.87 5.85 -51.93 -0.30 0.56 16 20 C -0.11 -0.92 5.10 -26.73 -0.14 -1.05 16 21 C -0.12 -0.69 5.80 -26.73 -0.16 -0.85 16 22 C -0.16 -1.05 5.45 -26.73 -0.15 -1.20 16 23 C 0.29 2.65 2.10 -26.70 -0.06 2.59 16 24 F -0.20 -2.16 17.06 2.25 0.04 -2.12 16 25 F -0.20 -2.02 16.02 2.25 0.04 -1.98 16 26 C -0.14 -1.41 4.39 -26.71 -0.12 -1.53 16 27 C 0.10 1.82 5.91 -3.71 -0.02 1.80 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 30 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.65 5.42 -51.93 -0.28 0.37 16 36 H 0.08 0.61 8.02 -51.93 -0.42 0.20 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.44 7.80 -51.93 -0.41 0.04 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 1.12 7.86 -51.93 -0.41 0.71 16 43 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.09 1.84 7.00 -51.93 -0.36 1.48 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -32.01 357.42 -8.28 -40.29 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -7.11 Total: 6.31 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.63 Total: -1.30 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.06 Total: -54.21 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -4.17 SS G_CDS: 0.07 Total: -4.10 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.01 -8.28 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000165481.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.037 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds