Wall clock time and date at job start Tue Mar 31 2020 10:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86798 * 119.99797 * 2 1 4 4 H 1.48503 * 109.47209 * 240.00177 * 3 2 1 5 5 H 1.48497 * 109.46988 * 120.00223 * 3 2 1 6 6 H 1.48501 * 109.47346 * 0.02562 * 3 2 1 7 7 C 1.38810 * 120.00118 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46505 * 119.99837 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.49414 * 325.00097 * 10 9 7 12 12 C 1.53040 * 109.49769 * 85.06298 * 10 9 7 13 13 C 1.53030 * 109.53688 * 181.28474 * 12 10 9 14 14 C 1.53189 * 109.34081 * 298.68042 * 13 12 10 15 15 N 1.46927 * 108.77274 * 54.62289 * 14 13 12 16 16 C 1.34781 * 120.63007 * 126.41187 * 15 14 13 17 17 O 1.21280 * 119.99668 * 355.59430 * 16 15 14 18 18 C 1.50700 * 120.00040 * 175.58852 * 16 15 14 19 19 H 1.08999 * 109.46981 * 37.88352 * 18 16 15 20 20 C 1.53000 * 109.46973 * 157.88480 * 18 16 15 21 21 C 1.53005 * 109.46840 * 180.02562 * 20 18 16 22 22 C 1.53003 * 109.47185 * 300.00049 * 21 20 18 23 23 C 1.52995 * 109.46951 * 59.99805 * 22 21 20 24 24 F 1.39906 * 109.47037 * 60.00577 * 23 22 21 25 25 F 1.39905 * 109.46829 * 179.97438 * 23 22 21 26 26 C 1.52994 * 109.47660 * 300.00013 * 23 22 21 27 27 C 1.46918 * 118.74041 * 306.38986 * 15 14 13 28 28 H 0.97003 * 119.99499 * 179.97438 * 1 2 3 29 29 H 0.97002 * 120.00141 * 359.97438 * 9 7 2 30 30 H 1.09008 * 109.45702 * 301.33878 * 12 10 9 31 31 H 1.09003 * 109.45807 * 61.29646 * 12 10 9 32 32 H 1.09006 * 109.49508 * 178.71916 * 13 12 10 33 33 H 1.08992 * 109.50285 * 58.65254 * 13 12 10 34 34 H 1.08997 * 109.58991 * 294.83394 * 14 13 12 35 35 H 1.08999 * 109.70613 * 174.47602 * 14 13 12 36 36 H 1.09004 * 109.46924 * 299.99724 * 20 18 16 37 37 H 1.08999 * 109.47371 * 60.00111 * 20 18 16 38 38 H 1.09001 * 109.46687 * 59.99993 * 21 20 18 39 39 H 1.09001 * 109.46618 * 180.02562 * 21 20 18 40 40 H 1.08999 * 109.47131 * 180.02562 * 22 21 20 41 41 H 1.08999 * 109.46887 * 299.99962 * 22 21 20 42 42 H 1.08999 * 109.47088 * 300.00400 * 26 23 22 43 43 H 1.08996 * 109.47637 * 179.97438 * 26 23 22 44 44 H 1.09003 * 109.59066 * 293.82342 * 27 15 14 45 45 H 1.08998 * 109.59161 * 173.39480 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 3.1039 1.6964 1.2125 6 1 1.2852 2.7465 0.0006 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6568 -0.0027 11 1 2.9690 -3.5504 -0.5920 12 6 2.4211 -4.0384 1.4342 13 6 3.2141 -5.3471 1.4314 14 6 2.3489 -6.4633 0.8380 15 7 1.8765 -6.0413 -0.4877 16 6 2.0781 -6.8206 -1.5687 17 8 2.7233 -7.8425 -1.4676 18 6 1.5016 -6.4222 -2.9029 19 1 1.5710 -5.3408 -3.0203 20 6 2.2864 -7.1083 -4.0229 21 6 1.7015 -6.7033 -5.3775 22 6 0.2340 -7.1302 -5.4475 23 6 -0.5507 -6.4443 -4.3275 24 9 -0.4613 -5.0562 -4.4780 25 9 -1.8928 -6.8343 -4.3920 26 6 0.0341 -6.8492 -2.9730 27 6 1.1799 -4.7538 -0.6125 28 1 -0.4849 -0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 3.0260 -3.2476 1.8781 31 1 1.5091 -4.1681 2.0168 32 1 3.4918 -5.6064 2.4531 33 1 4.1145 -5.2258 0.8294 34 1 1.4942 -6.6483 1.4886 35 1 2.9393 -7.3746 0.7424 36 1 3.3319 -6.8036 -3.9732 37 1 2.2171 -8.1897 -3.9055 38 1 1.7713 -5.6218 -5.4946 39 1 2.2604 -7.1924 -6.1753 40 1 -0.1826 -6.8421 -6.4127 41 1 0.1643 -8.2117 -5.3304 42 1 -0.0357 -7.9306 -2.8558 43 1 -0.5247 -6.3602 -2.1751 44 1 0.2298 -4.7992 -0.0802 45 1 1.0010 -4.5356 -1.6654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000165485.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:17 Heat of formation + Delta-G solvation = -143.057358 kcal Electronic energy + Delta-G solvation = -28269.156973 eV Core-core repulsion = 24149.522953 eV Total energy + Delta-G solvation = -4119.634020 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.09449 -47.07421 -40.51213 -38.00634 -36.92742 -34.61874 -32.86471 -31.70184 -31.00222 -30.16119 -28.08223 -25.72243 -23.90464 -23.63452 -23.04243 -21.97526 -20.69798 -20.01063 -18.97578 -17.73575 -17.21608 -17.14617 -16.77204 -16.52127 -15.75087 -15.46740 -15.00702 -14.43437 -14.30872 -14.16068 -14.03927 -13.67765 -13.64211 -13.51651 -13.39030 -13.27853 -13.00406 -12.97127 -12.75220 -12.46415 -12.19602 -11.94515 -11.52126 -11.30442 -11.14840 -11.12451 -10.90340 -10.83227 -10.65679 -10.54306 -10.46543 -10.39029 -10.00674 -9.66092 -9.26735 -8.97460 -8.53617 -7.12981 -6.15702 -3.17544 2.51610 2.93974 3.49219 3.52111 3.57091 3.69788 3.81036 4.06386 4.11489 4.48355 4.56230 4.64939 4.69170 4.82643 4.89097 5.00936 5.07541 5.15550 5.18835 5.20601 5.32371 5.41441 5.48683 5.52095 5.52852 5.57823 5.60274 5.66884 5.69888 5.77042 5.84369 5.91563 5.99497 6.06589 6.17815 6.26805 6.30828 6.58588 6.71279 6.88493 7.41223 7.74777 8.13376 8.69220 9.13653 10.00154 10.13414 11.32194 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.012150 B = 0.004350 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.977793 B = 6435.731340 C = 7849.118892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.041 4.041 3 Si 1.079 2.921 4 H -0.295 1.295 5 H -0.295 1.295 6 H -0.284 1.284 7 C -0.333 4.333 8 H 0.065 0.935 9 N -0.732 5.732 10 C 0.173 3.827 11 H 0.053 0.947 12 C -0.137 4.137 13 C -0.132 4.132 14 C 0.112 3.888 15 N -0.602 5.602 16 C 0.525 3.475 17 O -0.547 6.547 18 C -0.110 4.110 19 H 0.108 0.892 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.158 4.158 23 C 0.292 3.708 24 F -0.193 7.193 25 F -0.201 7.201 26 C -0.147 4.147 27 C 0.095 3.905 28 H 0.255 0.745 29 H 0.367 0.633 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -16.891 -7.272 18.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.239 4.239 3 Si 0.909 3.091 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.210 1.210 7 C -0.464 4.464 8 H 0.083 0.917 9 N -0.375 5.375 10 C 0.062 3.938 11 H 0.071 0.929 12 C -0.177 4.177 13 C -0.171 4.171 14 C -0.011 4.011 15 N -0.334 5.334 16 C 0.313 3.687 17 O -0.424 6.424 18 C -0.131 4.131 19 H 0.126 0.874 20 C -0.142 4.142 21 C -0.157 4.157 22 C -0.196 4.196 23 C 0.256 3.744 24 F -0.174 7.174 25 F -0.182 7.182 26 C -0.186 4.186 27 C -0.029 4.029 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.112 0.888 44 H 0.086 0.914 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.348 -15.697 -7.227 17.440 hybrid contribution -0.345 -1.401 0.191 1.455 sum 2.003 -17.098 -7.036 18.597 Atomic orbital electron populations 1.70898 1.06044 1.28453 1.53185 1.25764 0.97009 1.00966 1.00169 0.83259 0.74260 0.75650 0.75887 1.22210 1.22256 1.20988 1.19983 0.91965 0.85490 1.48924 0.91725 1.42325 1.04779 1.00472 1.89921 1.20413 0.94421 0.85310 0.93628 0.92948 1.22257 0.99668 0.95547 1.00248 1.21913 0.98859 0.95721 1.00573 1.21630 0.98395 0.98367 0.82669 1.48126 1.57142 1.20273 1.07883 1.20315 0.79832 0.83353 0.85237 1.90656 1.40695 1.25767 1.85332 1.21337 0.94445 1.03624 0.93738 0.87377 1.21459 0.99531 1.01398 0.91831 1.21551 0.93465 1.02767 0.97962 1.22546 0.96846 1.02178 0.98045 1.20988 0.78568 0.76994 0.97895 1.93052 1.96041 1.31456 1.96840 1.93015 1.36894 1.90811 1.97492 1.22423 0.95619 1.04529 0.96011 1.22274 0.95828 0.82191 1.02576 0.93361 0.79936 0.91449 0.92627 0.91306 0.91869 0.91681 0.89333 0.90512 0.90261 0.90493 0.89995 0.89309 0.88706 0.88173 0.88836 0.91379 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.37 13.70 55.49 0.76 -27.61 16 2 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 3 Si 1.08 25.40 29.92 -169.99 -5.09 20.32 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.30 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.33 -9.00 9.93 -15.06 -0.15 -9.15 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.73 -17.31 5.12 -53.30 -0.27 -17.59 16 10 C 0.17 3.25 2.92 -67.81 -0.20 3.05 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.14 -2.32 5.47 -26.70 -0.15 -2.47 16 13 C -0.13 -1.81 6.08 -26.62 -0.16 -1.97 16 14 C 0.11 1.48 6.44 -3.71 -0.02 1.46 16 15 N -0.60 -8.53 2.97 -172.78 -0.51 -9.04 16 16 C 0.52 7.43 6.83 -10.98 -0.08 7.35 16 17 O -0.55 -8.96 15.47 5.56 0.09 -8.87 16 18 C -0.11 -1.29 1.57 -91.77 -0.14 -1.44 16 19 H 0.11 1.36 5.88 -51.93 -0.31 1.06 16 20 C -0.10 -1.05 4.70 -26.73 -0.13 -1.17 16 21 C -0.12 -1.00 5.80 -26.73 -0.16 -1.15 16 22 C -0.16 -1.33 5.45 -26.73 -0.15 -1.47 16 23 C 0.29 3.24 2.10 -26.74 -0.06 3.18 16 24 F -0.19 -2.64 16.02 2.25 0.04 -2.60 16 25 F -0.20 -2.49 17.06 2.25 0.04 -2.45 16 26 C -0.15 -1.59 4.68 -26.73 -0.13 -1.72 16 27 C 0.09 1.46 5.41 -3.72 -0.02 1.44 16 28 H 0.26 7.54 6.77 -40.82 -0.28 7.26 16 29 H 0.37 8.93 6.63 -40.82 -0.27 8.66 16 30 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.80 7.88 -51.93 -0.41 0.39 16 38 H 0.08 0.71 7.80 -51.93 -0.41 0.30 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 1.05 7.77 -51.93 -0.40 0.65 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.09 1.33 5.42 -51.93 -0.28 1.05 16 LS Contribution 355.10 15.07 5.35 5.35 Total: -1.00 -31.60 355.10 -8.21 -39.81 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -6.99 Total: 7.99 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.62 Total: -5.31 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.03 Total: -54.24 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 9 Polarization: -5.12 SS G_CDS: 0.07 Total: -5.05 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.60 -8.21 -39.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000165485.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.245 kcal (2) G-P(sol) polarization free energy of solvation -31.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds