Wall clock time and date at job start Tue Mar 31 2020 10:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48499 * 109.47363 * 240.00157 * 3 2 1 5 5 H 1.48505 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47220 * 119.99423 * 3 2 1 7 7 C 1.38812 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00249 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99692 * 0.02562 * 7 2 1 10 10 C 1.46504 * 120.00022 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.49067 * 35.06051 * 10 9 7 12 12 C 1.53031 * 109.49899 * 275.00074 * 10 9 7 13 13 C 1.53040 * 109.53948 * 178.68245 * 12 10 9 14 14 C 1.53196 * 109.31273 * 61.36193 * 13 12 10 15 15 N 1.46921 * 108.77331 * 305.36969 * 14 13 12 16 16 C 1.34777 * 120.62636 * 233.58613 * 15 14 13 17 17 O 1.21281 * 120.00167 * 184.44038 * 16 15 14 18 18 C 1.50700 * 120.00217 * 4.70968 * 16 15 14 19 19 H 1.08995 * 109.47314 * 324.42710 * 18 16 15 20 20 C 1.53001 * 109.47478 * 204.42157 * 18 16 15 21 21 C 1.53001 * 109.47302 * 180.02562 * 20 18 16 22 22 C 1.52996 * 109.47033 * 59.99926 * 21 20 18 23 23 C 1.52997 * 109.47508 * 300.00540 * 22 21 20 24 24 F 1.39897 * 109.47206 * 179.97438 * 23 22 21 25 25 F 1.39907 * 109.46685 * 299.99763 * 23 22 21 26 26 C 1.52991 * 109.47371 * 59.99719 * 23 22 21 27 27 C 1.46923 * 118.74523 * 53.85755 * 15 14 13 28 28 H 0.96998 * 119.99724 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99830 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46547 * 58.65663 * 12 10 9 31 31 H 1.09001 * 109.44901 * 298.69721 * 12 10 9 32 32 H 1.08998 * 109.49768 * 301.41147 * 13 12 10 33 33 H 1.08996 * 109.52351 * 181.33140 * 13 12 10 34 34 H 1.08993 * 109.58268 * 185.57699 * 14 13 12 35 35 H 1.09002 * 109.70232 * 65.22425 * 14 13 12 36 36 H 1.08995 * 109.47299 * 300.00562 * 20 18 16 37 37 H 1.09000 * 109.46714 * 60.00125 * 20 18 16 38 38 H 1.08995 * 109.46850 * 180.02562 * 21 20 18 39 39 H 1.09006 * 109.46662 * 300.00376 * 21 20 18 40 40 H 1.09009 * 109.46805 * 60.00186 * 22 21 20 41 41 H 1.08997 * 109.47110 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.47119 * 180.02562 * 26 23 22 43 43 H 1.08995 * 109.47388 * 60.00060 * 26 23 22 44 44 H 1.09004 * 109.58188 * 65.92807 * 27 15 14 45 45 H 1.08996 * 109.59100 * 186.35489 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9684 -3.5512 0.5908 12 6 2.4224 -4.0363 -1.4365 13 6 3.2161 -5.3448 -1.4348 14 6 2.3500 -6.4620 -0.8444 15 7 1.8757 -6.0421 0.4812 16 6 2.0757 -6.8233 1.5612 17 8 1.6098 -6.5047 2.6347 18 6 2.8834 -8.0894 1.4362 19 1 2.6957 -8.5457 0.4643 20 6 2.4787 -9.0641 2.5440 21 6 3.2991 -10.3493 2.4174 22 6 4.7874 -10.0191 2.5473 23 6 5.1922 -9.0444 1.4396 24 9 6.5529 -8.7420 1.5588 25 9 4.9516 -9.6303 0.1921 26 6 4.3718 -7.7592 1.5662 27 6 1.1740 -4.7574 0.6063 28 1 -0.4850 0.8401 -0.0004 29 1 0.3556 -2.3880 0.0005 30 1 3.0277 -3.2450 -1.8789 31 1 1.5108 -4.1653 -2.0200 32 1 4.1154 -5.2240 -0.8309 33 1 3.4958 -5.6025 -2.4563 34 1 2.9424 -7.3719 -0.7494 35 1 1.4962 -6.6482 -1.4959 36 1 2.6664 -8.6078 3.5158 37 1 1.4183 -9.2989 2.4516 38 1 3.0104 -11.0437 3.2063 39 1 3.1117 -10.8057 1.4454 40 1 4.9748 -9.5626 3.5193 41 1 5.3719 -10.9346 2.4567 42 1 4.6599 -7.0650 0.7767 43 1 4.5591 -7.3028 2.5381 44 1 0.2262 -4.8050 0.0700 45 1 0.9902 -4.5423 1.6589 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000165487.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:20 Heat of formation + Delta-G solvation = -143.052309 kcal Electronic energy + Delta-G solvation = -27948.807007 eV Core-core repulsion = 23829.173206 eV Total energy + Delta-G solvation = -4119.633801 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.24551 -47.22869 -40.46957 -37.96781 -36.86230 -34.54346 -32.39731 -31.73020 -31.12555 -30.26492 -28.34659 -25.60938 -24.27347 -23.41863 -22.96941 -22.08971 -20.75218 -19.93995 -18.86455 -17.68918 -17.26265 -17.20698 -16.81833 -16.53047 -15.60018 -15.31882 -15.09818 -14.46278 -14.37196 -14.15696 -14.04791 -13.79307 -13.56288 -13.54051 -13.29879 -13.13852 -13.02125 -12.94597 -12.72678 -12.57977 -12.24140 -11.95638 -11.64908 -11.25016 -11.19583 -11.01282 -10.94829 -10.91109 -10.77177 -10.60282 -10.44856 -10.37927 -10.12697 -9.75523 -9.54851 -8.92969 -8.45104 -7.01166 -5.79459 -3.09315 2.56016 3.00822 3.42894 3.46204 3.47656 3.48405 3.72792 3.97908 4.01170 4.45613 4.48023 4.56937 4.61184 4.74053 4.77228 4.92334 4.98025 5.07705 5.12421 5.26764 5.32814 5.42891 5.48098 5.48766 5.53201 5.54048 5.59661 5.71572 5.73339 5.77476 5.80488 5.99372 6.02412 6.12071 6.21291 6.35950 6.51585 6.66018 6.84280 7.01477 7.51165 7.66914 8.22252 8.38552 9.49637 10.04629 10.39652 11.42928 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.021913 B = 0.003111 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.491491 B = 8998.990667 C = 9293.499655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.908 3.092 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.049 0.951 12 C -0.137 4.137 13 C -0.133 4.133 14 C 0.103 3.897 15 N -0.603 5.603 16 C 0.519 3.481 17 O -0.537 6.537 18 C -0.106 4.106 19 H 0.102 0.898 20 C -0.108 4.108 21 C -0.118 4.118 22 C -0.159 4.159 23 C 0.293 3.707 24 F -0.200 7.200 25 F -0.199 7.199 26 C -0.150 4.150 27 C 0.106 3.894 28 H 0.256 0.744 29 H 0.384 0.616 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.102 -23.686 1.082 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.067 0.933 12 C -0.178 4.178 13 C -0.172 4.172 14 C -0.020 4.020 15 N -0.335 5.335 16 C 0.306 3.694 17 O -0.414 6.414 18 C -0.127 4.127 19 H 0.120 0.880 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.197 4.197 23 C 0.257 3.743 24 F -0.181 7.181 25 F -0.180 7.180 26 C -0.188 4.188 27 C -0.017 4.017 28 H 0.066 0.934 29 H 0.218 0.782 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.121 0.879 44 H 0.084 0.916 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.975 -23.338 1.644 24.717 hybrid contribution 0.363 1.023 -0.408 1.159 sum 8.338 -22.315 1.236 23.854 Atomic orbital electron populations 1.69651 1.05117 1.25884 1.57326 1.24747 0.95520 0.97710 1.02755 0.86262 0.78536 0.83474 0.77869 1.21242 1.21657 1.21213 1.19156 0.90938 0.83898 1.43192 0.91215 1.42304 1.05806 0.99505 1.88593 1.20556 0.94530 0.85940 0.93160 0.93254 1.22288 0.99628 0.95235 1.00655 1.21938 0.98712 0.95982 1.00572 1.21872 0.98570 0.97832 0.83752 1.48142 1.57095 1.20595 1.07707 1.20289 0.80567 0.84714 0.83851 1.90706 1.50656 1.72943 1.27086 1.21301 0.93708 0.95215 1.02494 0.88015 1.21490 1.00493 0.93798 0.98766 1.21532 0.92396 0.98071 1.03534 1.22556 0.99021 0.99742 0.98407 1.21006 0.77697 0.93810 0.81807 1.93023 1.34749 1.94215 1.96089 1.92996 1.94162 1.85781 1.45028 1.22464 0.93672 0.96043 1.06640 1.22117 0.95000 0.81275 1.03316 0.93380 0.78178 0.91514 0.92427 0.91918 0.91221 0.90074 0.91172 0.89999 0.90518 0.90001 0.90795 0.88511 0.89386 0.88692 0.87856 0.91615 0.88916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.77 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.85 5.13 -53.09 -0.27 -18.12 16 10 C 0.17 3.31 2.94 -67.59 -0.20 3.11 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.14 -2.30 5.46 -26.69 -0.15 -2.45 16 13 C -0.13 -1.65 6.08 -26.61 -0.16 -1.82 16 14 C 0.10 1.15 6.20 -3.71 -0.02 1.12 16 15 N -0.60 -8.51 2.97 -172.51 -0.51 -9.02 16 16 C 0.52 7.30 6.80 -10.99 -0.07 7.22 16 17 O -0.54 -9.57 15.52 5.56 0.09 -9.49 16 18 C -0.11 -1.05 1.57 -91.77 -0.14 -1.19 16 19 H 0.10 0.87 5.96 -51.93 -0.31 0.56 16 20 C -0.11 -0.93 4.73 -26.73 -0.13 -1.06 16 21 C -0.12 -0.75 5.80 -26.73 -0.16 -0.90 16 22 C -0.16 -1.08 5.45 -26.73 -0.15 -1.22 16 23 C 0.29 2.63 2.10 -26.74 -0.06 2.58 16 24 F -0.20 -2.14 17.06 2.25 0.04 -2.10 16 25 F -0.20 -1.96 16.03 2.25 0.04 -1.92 16 26 C -0.15 -1.43 4.60 -26.73 -0.12 -1.55 16 27 C 0.11 1.84 5.92 -3.49 -0.02 1.82 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.38 10.09 7.80 -40.82 -0.32 9.77 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.73 5.18 -51.93 -0.27 0.46 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.79 7.87 -51.93 -0.41 0.38 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.46 7.80 -51.93 -0.41 0.06 16 40 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.93 7.86 -51.93 -0.41 0.53 16 43 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.09 1.83 7.03 -51.93 -0.37 1.46 16 LS Contribution 357.00 15.07 5.38 5.38 Total: -1.00 -31.77 357.00 -8.26 -40.03 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -7.10 Total: 6.71 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.62 Total: -1.52 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.06 Total: -54.40 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.07 Total: -4.03 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.77 -8.26 -40.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000165487.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.019 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds