Wall clock time and date at job start Tue Mar 31 2020 10:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00006 * 2 1 4 4 H 1.48502 * 109.47253 * 272.35346 * 3 2 1 5 5 H 1.48491 * 109.47357 * 32.35759 * 3 2 1 6 6 H 1.48503 * 109.47012 * 152.35702 * 3 2 1 7 7 C 1.38810 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00279 * 342.18999 * 7 2 1 9 9 N 1.36937 * 120.00065 * 162.18840 * 7 2 1 10 10 C 1.46927 * 120.63471 * 151.39835 * 9 7 2 11 11 C 1.53186 * 108.77615 * 126.37347 * 10 9 7 12 12 C 1.53037 * 109.31524 * 54.63405 * 11 10 9 13 13 N 1.46497 * 109.45939 * 178.62860 * 12 11 10 14 14 C 1.34786 * 119.99753 * 205.02990 * 13 12 11 15 15 O 1.21285 * 119.99701 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99905 * 179.97438 * 14 13 12 17 17 H 1.08998 * 110.01394 * 31.66708 * 16 14 13 18 18 C 1.54267 * 110.03054 * 153.05516 * 16 14 13 19 19 C 1.54968 * 104.15890 * 142.86681 * 18 16 14 20 20 C 1.54888 * 102.77729 * 322.11107 * 19 18 16 21 21 C 1.53869 * 110.03500 * 270.27364 * 16 14 13 22 22 H 1.09003 * 110.03771 * 121.42725 * 21 16 14 23 23 C 1.53009 * 110.03131 * 0.04945 * 21 16 14 24 24 F 1.39896 * 109.46896 * 301.17533 * 23 21 16 25 25 F 1.39895 * 109.46936 * 61.17580 * 23 21 16 26 26 C 1.53040 * 109.53078 * 298.64374 * 12 11 10 27 27 C 1.46927 * 120.62938 * 331.38387 * 9 7 2 28 28 H 0.97002 * 120.00044 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58439 * 6.58378 * 10 9 7 30 30 H 1.09003 * 109.58622 * 246.16358 * 10 9 7 31 31 H 1.09002 * 109.49599 * 294.68043 * 11 10 9 32 32 H 1.08998 * 109.49809 * 174.59587 * 11 10 9 33 33 H 1.09001 * 109.45869 * 58.65973 * 12 11 10 34 34 H 0.96991 * 120.00643 * 25.02710 * 13 12 11 35 35 H 1.09008 * 110.48620 * 261.57207 * 18 16 14 36 36 H 1.09000 * 110.48646 * 24.21812 * 18 16 14 37 37 H 1.08995 * 110.76282 * 203.77962 * 19 18 16 38 38 H 1.08997 * 110.72430 * 80.42236 * 19 18 16 39 39 H 1.09001 * 110.48955 * 279.24542 * 20 19 18 40 40 H 1.09000 * 110.60194 * 156.64932 * 20 19 18 41 41 H 1.09002 * 109.47059 * 181.17517 * 23 21 16 42 42 H 1.08992 * 109.50138 * 181.30626 * 26 12 11 43 43 H 1.08994 * 109.49826 * 301.40951 * 26 12 11 44 44 H 1.08998 * 109.58825 * 353.41160 * 27 9 7 45 45 H 1.09001 * 109.59014 * 113.69461 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4479 2.0752 -1.3989 5 1 1.4736 2.6377 0.7493 6 1 3.5718 1.4262 0.6496 7 6 2.0102 -1.2022 0.0005 8 1 1.5090 -2.1149 0.2870 9 7 3.3303 -1.2309 -0.3622 10 6 4.2354 -2.2503 0.1859 11 6 4.9290 -2.9695 -0.9753 12 6 5.6151 -1.9370 -1.8727 13 7 6.3069 -2.6238 -2.9662 14 6 7.3594 -2.0380 -3.5710 15 8 7.7338 -0.9424 -3.2097 16 6 8.0715 -2.7447 -4.6955 17 1 7.3677 -3.3631 -5.2525 18 6 8.7281 -1.7132 -5.6361 19 6 10.0638 -2.3782 -6.0546 20 6 10.5181 -3.0834 -4.7525 21 6 9.2089 -3.6158 -4.1341 22 1 9.0576 -4.6569 -4.4194 23 6 9.2600 -3.4926 -2.6099 24 9 9.4593 -2.1538 -2.2567 25 9 8.0532 -3.9440 -2.0649 26 6 4.5661 -0.9847 -2.4515 27 6 3.8686 -0.2429 -1.3072 28 1 -0.4850 0.8401 -0.0004 29 1 3.6633 -2.9697 0.7719 30 1 4.9832 -1.7727 0.8189 31 1 4.1892 -3.5213 -1.5553 32 1 5.6734 -3.6617 -0.5819 33 1 6.3371 -1.3689 -1.2862 34 1 6.0078 -3.5001 -3.2549 35 1 8.0987 -1.5377 -6.5086 36 1 8.9165 -0.7794 -5.1063 37 1 10.7909 -1.6258 -6.3602 38 1 9.9003 -3.1047 -6.8505 39 1 10.9957 -2.3712 -4.0796 40 1 11.1957 -3.9067 -4.9786 41 1 10.0813 -4.0964 -2.2239 42 1 5.0524 -0.2639 -3.1088 43 1 3.8298 -1.5551 -3.0176 44 1 3.0547 0.3621 -1.7065 45 1 4.5847 0.4000 -0.7954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003011808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:25 Heat of formation + Delta-G solvation = -112.937637 kcal Electronic energy + Delta-G solvation = -28792.577281 eV Core-core repulsion = 24674.249350 eV Total energy + Delta-G solvation = -4118.327931 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.06876 -46.95556 -40.13959 -38.20914 -36.96624 -34.42612 -32.15728 -30.79081 -30.39319 -30.30188 -29.09809 -25.26290 -24.67263 -22.77994 -22.40114 -21.17581 -21.08025 -19.86788 -19.14026 -18.16192 -17.38736 -17.13197 -16.71249 -16.24387 -15.68825 -15.56380 -14.88455 -14.46744 -14.26598 -14.06574 -13.83508 -13.68006 -13.62230 -13.34432 -13.04805 -12.93147 -12.79386 -12.55232 -12.35970 -12.01331 -11.86110 -11.69455 -11.53540 -11.45016 -11.28483 -10.96441 -10.95374 -10.80169 -10.69142 -10.50529 -10.07452 -9.96376 -9.83834 -9.45763 -9.43204 -8.66364 -8.50757 -6.91867 -5.90247 -3.28384 2.76566 3.26973 3.38416 3.53665 3.57977 3.61598 3.89996 3.95337 4.12077 4.57975 4.58964 4.68025 4.74302 4.89770 5.02124 5.03375 5.10051 5.15540 5.25253 5.30522 5.32974 5.38292 5.48353 5.52064 5.66808 5.73446 5.77641 5.82548 5.91172 6.11194 6.12248 6.22305 6.26874 6.43945 6.51500 6.64524 6.69614 6.74794 6.89682 6.99426 7.77467 8.01947 8.37193 8.47751 8.98353 9.76429 10.14943 11.25812 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026626 B = 0.003676 C = 0.003490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.335602 B = 7614.520405 C = 8021.380961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.886 3.114 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.608 5.608 10 C 0.152 3.848 11 C -0.138 4.138 12 C 0.156 3.844 13 N -0.714 5.714 14 C 0.507 3.493 15 O -0.524 6.524 16 C -0.110 4.110 17 H 0.095 0.905 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.118 4.118 21 C -0.130 4.130 22 H 0.107 0.893 23 C 0.252 3.748 24 F -0.184 7.184 25 F -0.196 7.196 26 C -0.140 4.140 27 C 0.128 3.872 28 H 0.262 0.738 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.395 0.605 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.106 0.894 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.536 -11.037 -12.019 27.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.717 3.283 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.331 5.331 10 C 0.026 3.974 11 C -0.178 4.178 12 C 0.052 3.948 13 N -0.364 5.364 14 C 0.292 3.708 15 O -0.399 6.399 16 C -0.131 4.131 17 H 0.114 0.886 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.149 4.149 22 H 0.125 0.875 23 C 0.198 3.802 24 F -0.165 7.165 25 F -0.177 7.177 26 C -0.180 4.180 27 C 0.002 3.998 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.229 0.771 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.123 0.877 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 22.600 -10.127 -11.680 27.381 hybrid contribution 0.069 0.475 -0.132 0.497 sum 22.669 -9.652 -11.812 27.323 Atomic orbital electron populations 1.69809 1.05698 1.26509 1.53565 1.25298 0.95261 0.97652 0.99390 0.86919 0.79925 0.84400 0.77069 1.21642 1.23231 1.19412 1.18930 0.83583 0.94489 1.41711 0.89684 1.44395 1.07192 1.33330 1.48230 1.20866 0.92421 0.91477 0.92665 1.22291 0.99188 0.97637 0.98670 1.20877 0.93290 0.93593 0.87020 1.46227 1.31683 1.21711 1.36788 1.20285 0.80481 0.86539 0.83519 1.90702 1.64914 1.20225 1.64107 1.21959 0.97011 0.97872 0.96288 0.88634 1.22401 0.95694 0.98948 0.98085 1.22455 0.97096 0.99507 0.96619 1.22389 0.94952 1.00525 0.97727 1.22911 0.97213 1.01971 0.92824 0.87477 1.21877 0.85247 0.79828 0.93219 1.93122 1.95029 1.35348 1.93030 1.93039 1.48238 1.88965 1.87475 1.22375 0.97583 0.98738 0.99314 1.21327 0.96712 0.92019 0.89761 0.92804 0.91489 0.95801 0.91638 0.92066 0.90190 0.77144 0.91095 0.89052 0.90821 0.91238 0.90264 0.90647 0.87704 0.92557 0.91803 0.90922 0.95461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.52 13.97 55.49 0.78 -27.74 16 2 C 0.02 0.67 5.28 -17.43 -0.09 0.58 16 3 Si 0.89 23.36 24.30 -169.99 -4.13 19.23 16 4 H -0.29 -7.41 6.63 56.52 0.37 -7.04 16 5 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 6 H -0.27 -7.03 6.47 56.52 0.37 -6.66 16 7 C -0.26 -7.38 10.05 -15.06 -0.15 -7.53 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 16 9 N -0.61 -14.88 2.76 -172.33 -0.48 -15.36 16 10 C 0.15 3.07 6.52 -3.71 -0.02 3.05 16 11 C -0.14 -2.29 5.55 -26.62 -0.15 -2.44 16 12 C 0.16 2.69 2.42 -67.89 -0.16 2.53 16 13 N -0.71 -9.93 3.15 -53.77 -0.17 -10.10 16 14 C 0.51 7.17 4.28 -10.98 -0.05 7.12 16 15 O -0.52 -9.54 13.31 5.55 0.07 -9.47 16 16 C -0.11 -1.06 3.25 -90.66 -0.29 -1.35 16 17 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 18 C -0.11 -1.06 6.31 -25.03 -0.16 -1.22 16 19 C -0.12 -0.79 6.91 -24.70 -0.17 -0.96 16 20 C -0.12 -0.76 6.29 -25.07 -0.16 -0.92 16 21 C -0.13 -0.97 3.14 -89.50 -0.28 -1.25 16 22 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 23 C 0.25 2.43 4.54 37.16 0.17 2.60 16 24 F -0.18 -2.57 13.25 2.25 0.03 -2.54 16 25 F -0.20 -2.27 13.92 2.25 0.03 -2.24 16 26 C -0.14 -2.73 5.65 -26.62 -0.15 -2.88 16 27 C 0.13 2.98 4.18 -3.72 -0.02 2.96 16 28 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 29 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.57 7.58 -51.93 -0.39 1.18 16 34 H 0.39 4.50 8.39 -40.82 -0.34 4.16 16 35 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 36 H 0.09 1.12 6.83 -51.93 -0.35 0.76 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.62 7.30 -51.93 -0.38 0.24 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.84 4.45 -51.93 -0.23 1.61 16 45 H 0.03 0.65 6.94 -51.93 -0.36 0.29 16 LS Contribution 342.70 15.07 5.16 5.16 Total: -1.00 -34.48 342.70 -7.55 -42.03 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.17 Total: 0.75 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.69 Total: 0.28 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.13 Total: -53.20 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 9 Polarization: -4.85 SS G_CDS: 0.06 Total: -4.79 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.13 Total: 19.23 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.48 -7.55 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003011808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.907 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds