Wall clock time and date at job start Tue Mar 31 2020 10:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99861 * 2 1 4 4 H 1.48506 * 109.46717 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46865 * 299.99084 * 3 2 1 6 6 H 1.48495 * 109.47592 * 59.99686 * 3 2 1 7 7 C 1.38809 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99687 * 162.88322 * 7 2 1 9 9 N 1.36935 * 120.00314 * 342.87944 * 7 2 1 10 10 C 1.46931 * 120.62657 * 150.53288 * 9 7 2 11 11 C 1.53191 * 108.89147 * 126.46591 * 10 9 7 12 12 C 1.53041 * 109.31231 * 54.56065 * 11 10 9 13 13 N 1.46507 * 109.45700 * 178.61504 * 12 11 10 14 14 C 1.34777 * 119.99751 * 204.99782 * 13 12 11 15 15 O 1.21286 * 120.00126 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00067 * 180.02562 * 14 13 12 17 17 H 1.09002 * 110.01853 * 331.38843 * 16 14 13 18 18 C 1.54266 * 110.03386 * 210.00037 * 16 14 13 19 19 C 1.54961 * 104.15969 * 217.13375 * 18 16 14 20 20 C 1.54896 * 102.77698 * 37.88818 * 19 18 16 21 21 C 1.53871 * 110.03334 * 92.78194 * 16 14 13 22 22 H 1.09004 * 110.03368 * 238.62002 * 21 16 14 23 23 C 1.53001 * 110.03226 * 359.97438 * 21 16 14 24 24 F 1.39900 * 109.47095 * 301.05171 * 23 21 16 25 25 F 1.39902 * 109.46941 * 61.05021 * 23 21 16 26 26 C 1.53036 * 109.54063 * 298.63444 * 12 11 10 27 27 C 1.46958 * 120.65781 * 330.35321 * 9 7 2 28 28 H 0.97000 * 119.99663 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.59171 * 6.60811 * 10 9 7 30 30 H 1.08996 * 109.58699 * 246.32238 * 10 9 7 31 31 H 1.08996 * 109.50263 * 174.51389 * 11 10 9 32 32 H 1.09006 * 109.49587 * 294.61084 * 11 10 9 33 33 H 1.08996 * 109.46002 * 58.66069 * 12 11 10 34 34 H 0.97000 * 120.00043 * 25.00527 * 13 12 11 35 35 H 1.09005 * 110.48655 * 335.78398 * 18 16 14 36 36 H 1.09002 * 110.48659 * 98.42545 * 18 16 14 37 37 H 1.09001 * 110.72431 * 279.57163 * 19 18 16 38 38 H 1.09004 * 110.92432 * 156.29597 * 19 18 16 39 39 H 1.08996 * 110.48117 * 203.40105 * 20 19 18 40 40 H 1.09003 * 110.59637 * 80.81411 * 20 19 18 41 41 H 1.09002 * 109.46937 * 181.04704 * 23 21 16 42 42 H 1.08998 * 109.50234 * 181.31751 * 26 12 11 43 43 H 1.09006 * 109.49780 * 301.41512 * 26 12 11 44 44 H 1.09003 * 109.46482 * 113.74816 * 27 9 7 45 45 H 1.08997 * 109.70741 * 353.46531 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0544 -1.2230 -0.2748 9 7 1.3710 -2.3616 0.3502 10 6 1.7953 -3.6499 -0.2149 11 6 2.0682 -4.6286 0.9316 12 6 0.8323 -4.7129 1.8302 13 7 1.0779 -5.6730 2.9091 14 6 0.0421 -6.2942 3.5072 15 8 -1.0934 -6.0586 3.1519 16 6 0.2947 -7.2814 4.6174 17 1 1.2698 -7.7502 4.4852 18 6 -0.8112 -8.3569 4.6301 19 6 -1.0468 -8.6407 6.1352 20 6 -0.9096 -7.2363 6.7741 21 6 0.2326 -6.5695 5.9801 22 1 1.1776 -6.6927 6.5092 23 6 -0.0656 -5.0820 5.7812 24 9 0.9323 -4.5087 4.9858 25 9 -1.3060 -4.9353 5.1510 26 6 0.5406 -3.3355 2.4300 27 6 0.2503 -2.3422 1.3005 28 1 -0.4850 0.8401 -0.0004 29 1 2.7039 -3.5106 -0.8005 30 1 1.0060 -4.0464 -0.8536 31 1 2.2892 -5.6147 0.5234 32 1 2.9191 -4.2769 1.5153 33 1 -0.0237 -5.0408 1.2405 34 1 1.9861 -5.8616 3.1931 35 1 -1.7209 -7.9741 4.1672 36 1 -0.4725 -9.2584 4.1195 37 1 -0.2862 -9.3179 6.5237 38 1 -2.0447 -9.0457 6.3034 39 1 -0.6431 -7.3210 7.8276 40 1 -1.8345 -6.6709 6.6597 41 1 -0.0891 -4.5835 6.7502 42 1 -0.3257 -3.4013 3.0882 43 1 1.4059 -2.9961 2.9996 44 1 -0.6667 -2.6309 0.7867 45 1 0.1371 -1.3405 1.7149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003011809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:29 Heat of formation + Delta-G solvation = -118.719557 kcal Electronic energy + Delta-G solvation = -28949.782639 eV Core-core repulsion = 24831.203985 eV Total energy + Delta-G solvation = -4118.578654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.86052 -46.73807 -40.00366 -37.98389 -36.72682 -34.24284 -32.08612 -30.64838 -30.16047 -29.71024 -28.81346 -25.17409 -24.62968 -22.44441 -22.11282 -21.08305 -20.95876 -19.57353 -18.96891 -17.99795 -17.27200 -16.91087 -16.62875 -16.04170 -15.54331 -15.22003 -14.73276 -14.40594 -14.09448 -13.75913 -13.60337 -13.49325 -13.38417 -13.13684 -12.93425 -12.75852 -12.48720 -12.38432 -12.30973 -11.88424 -11.46429 -11.38222 -11.36901 -11.19830 -11.03856 -10.89316 -10.79560 -10.69248 -10.57062 -10.25711 -10.12297 -9.97331 -9.65609 -9.62670 -9.25864 -8.51487 -8.30507 -6.58790 -5.72433 -3.16200 2.88247 3.39553 3.42519 3.48229 3.50583 3.75542 4.00694 4.11375 4.26866 4.54521 4.70700 4.81223 4.85156 4.99829 5.12240 5.19110 5.24362 5.34692 5.40988 5.42940 5.50597 5.55267 5.56992 5.73030 5.76734 5.81136 5.89529 5.95107 6.17321 6.21733 6.34252 6.50324 6.59095 6.74526 6.76902 6.92836 7.03015 7.11856 7.48251 7.75596 7.86118 7.91165 8.52204 8.60497 9.27662 9.91043 10.49308 11.36095 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026526 B = 0.003652 C = 0.003460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.295321 B = 7665.117089 C = 8090.148566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.004 3.996 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.138 4.138 12 C 0.155 3.845 13 N -0.715 5.715 14 C 0.506 3.494 15 O -0.522 6.522 16 C -0.109 4.109 17 H 0.093 0.907 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.129 4.129 22 H 0.105 0.895 23 C 0.251 3.749 24 F -0.191 7.191 25 F -0.182 7.182 26 C -0.138 4.138 27 C 0.175 3.825 28 H 0.253 0.747 29 H 0.056 0.944 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.839 -17.958 15.409 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.195 4.195 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.178 4.178 12 C 0.052 3.948 13 N -0.365 5.365 14 C 0.291 3.709 15 O -0.398 6.398 16 C -0.131 4.131 17 H 0.111 0.889 18 C -0.151 4.151 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.149 4.149 22 H 0.124 0.876 23 C 0.197 3.803 24 F -0.172 7.172 25 F -0.164 7.164 26 C -0.178 4.178 27 C 0.048 3.952 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.225 0.775 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.037 0.963 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.901 -17.598 15.072 23.188 hybrid contribution 0.993 0.915 0.125 1.356 sum 1.894 -16.683 15.196 22.646 Atomic orbital electron populations 1.70065 1.05282 1.25352 1.53629 1.25088 0.95239 0.98431 1.00771 0.86258 0.79371 0.84106 0.77236 1.20265 1.21746 1.21601 1.19188 0.92505 0.84870 1.41813 0.91785 1.44082 1.37894 1.01679 1.47845 1.20820 0.97858 0.86768 0.92340 1.22323 0.97100 0.99477 0.98906 1.20944 0.98269 0.88687 0.86950 1.46269 1.08640 1.43782 1.37798 1.20253 0.85643 0.81717 0.83328 1.90718 1.21714 1.63958 1.63410 1.21953 1.01803 0.96376 0.92964 0.88884 1.22387 0.99034 0.96831 0.96798 1.22448 1.01991 0.96121 0.95084 1.22390 0.97891 0.96697 0.98647 1.22899 1.02167 0.92960 0.96859 0.87645 1.21841 0.73545 0.94128 0.90759 1.93083 1.61383 1.86189 1.76570 1.93123 1.42409 1.96484 1.84345 1.22486 1.00575 0.94925 0.99833 1.20728 0.88918 0.97752 0.87755 0.93707 0.92511 0.96354 0.92871 0.91982 0.90471 0.77471 0.89102 0.91233 0.91351 0.90873 0.90746 0.90125 0.87930 0.92870 0.92737 0.96347 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 11.32 55.49 0.63 -26.39 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 22.11 29.59 -169.99 -5.03 17.08 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -7.14 9.56 -15.06 -0.14 -7.29 16 8 H 0.06 1.76 7.89 -52.48 -0.41 1.34 16 9 N -0.59 -15.36 2.99 -172.29 -0.52 -15.87 16 10 C 0.15 3.21 6.51 -3.71 -0.02 3.19 16 11 C -0.14 -2.42 5.55 -26.61 -0.15 -2.57 16 12 C 0.15 2.86 2.42 -67.89 -0.16 2.70 16 13 N -0.72 -10.62 3.39 -53.76 -0.18 -10.80 16 14 C 0.51 7.59 4.24 -10.99 -0.05 7.55 16 15 O -0.52 -10.06 13.22 5.55 0.07 -9.99 16 16 C -0.11 -1.13 3.24 -90.66 -0.29 -1.42 16 17 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.11 -1.10 6.32 -25.03 -0.16 -1.26 16 19 C -0.12 -0.86 6.91 -24.70 -0.17 -1.03 16 20 C -0.12 -0.89 6.29 -25.07 -0.16 -1.05 16 21 C -0.13 -1.13 3.16 -89.51 -0.28 -1.41 16 22 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 23 C 0.25 2.93 4.57 37.16 0.17 3.10 16 24 F -0.19 -2.72 12.15 2.25 0.03 -2.69 16 25 F -0.18 -2.91 13.23 2.25 0.03 -2.88 16 26 C -0.14 -2.94 4.45 -26.61 -0.12 -3.05 16 27 C 0.17 4.47 5.29 -3.69 -0.02 4.45 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.62 7.58 -51.93 -0.39 1.22 16 34 H 0.39 4.78 8.54 -40.82 -0.35 4.43 16 35 H 0.09 1.15 6.87 -51.93 -0.36 0.79 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.73 7.21 -51.93 -0.37 0.35 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.05 1.18 7.87 -51.93 -0.41 0.77 16 43 H 0.05 1.17 7.90 -51.93 -0.41 0.76 16 44 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.08 2.36 6.20 -51.93 -0.32 2.04 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -33.76 346.47 -8.62 -42.37 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -7.23 Total: 2.02 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.64 Total: 1.92 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.07 Total: -53.06 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.06 Total: -5.57 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.76 -8.62 -42.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003011809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.347 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds