Wall clock time and date at job start Tue Mar 31 2020 10:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99944 * 2 1 4 4 H 1.48497 * 109.47257 * 270.00498 * 3 2 1 5 5 H 1.48505 * 109.47113 * 30.00193 * 3 2 1 6 6 H 1.48499 * 109.47259 * 150.00181 * 3 2 1 7 7 C 1.38817 * 120.00048 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99618 * 163.07466 * 7 2 1 9 9 N 1.36933 * 119.99554 * 343.06625 * 7 2 1 10 10 C 1.46927 * 120.63415 * 331.82507 * 9 7 2 11 11 C 1.53192 * 108.77572 * 233.62971 * 10 9 7 12 12 C 1.53039 * 109.31521 * 305.36628 * 11 10 9 13 13 N 1.46499 * 109.46043 * 181.38517 * 12 11 10 14 14 C 1.34772 * 120.00033 * 155.24891 * 13 12 11 15 15 O 1.21277 * 120.00138 * 359.72583 * 14 13 12 16 16 C 1.50705 * 120.00098 * 179.72180 * 14 13 12 17 17 H 1.08998 * 110.02121 * 301.39610 * 16 14 13 18 18 C 1.54268 * 110.02829 * 62.83564 * 16 14 13 19 19 C 1.54887 * 104.19706 * 95.67376 * 18 16 14 20 20 C 1.54891 * 102.74863 * 37.94209 * 19 18 16 21 21 C 1.53868 * 110.03514 * 180.02562 * 16 14 13 22 22 H 1.09005 * 110.02973 * 359.97438 * 21 16 14 23 23 C 1.52998 * 110.03710 * 121.43267 * 21 16 14 24 24 F 1.39901 * 109.46987 * 300.00362 * 23 21 16 25 25 F 1.39900 * 109.46646 * 59.99773 * 23 21 16 26 26 C 1.53042 * 109.52592 * 61.37475 * 12 11 10 27 27 C 1.46931 * 120.62882 * 151.85422 * 9 7 2 28 28 H 0.96997 * 120.00302 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58554 * 113.84522 * 10 9 7 30 30 H 1.08992 * 109.58465 * 353.42182 * 10 9 7 31 31 H 1.09002 * 109.49531 * 185.41221 * 11 10 9 32 32 H 1.09002 * 109.52017 * 65.33528 * 11 10 9 33 33 H 1.08994 * 109.46163 * 301.35721 * 12 11 10 34 34 H 0.97010 * 120.00299 * 334.97038 * 13 12 11 35 35 H 1.09003 * 110.48390 * 214.35206 * 18 16 14 36 36 H 1.09002 * 110.49082 * 336.99479 * 18 16 14 37 37 H 1.08993 * 110.75913 * 279.62441 * 19 18 16 38 38 H 1.09003 * 110.91280 * 156.32616 * 19 18 16 39 39 H 1.08997 * 110.48571 * 203.38015 * 20 19 18 40 40 H 1.09002 * 110.48720 * 80.73293 * 20 19 18 41 41 H 1.08995 * 109.47657 * 180.02562 * 23 21 16 42 42 H 1.08996 * 109.50141 * 58.57407 * 26 12 11 43 43 H 1.08998 * 109.49686 * 178.67841 * 26 12 11 44 44 H 1.09005 * 109.58331 * 246.15458 * 27 9 7 45 45 H 1.09001 * 109.58511 * 6.43442 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3624 0.3444 10 6 0.2264 -2.3409 1.2665 11 6 0.4986 -3.3203 2.4126 12 6 0.8134 -4.7016 1.8340 13 7 1.0418 -5.6487 2.9281 14 6 0.8436 -6.9670 2.7306 15 8 0.4715 -7.3689 1.6486 16 6 1.0846 -7.9419 3.8544 17 1 2.1160 -7.8669 4.1987 18 6 0.1153 -7.6550 5.0197 19 6 -1.0618 -8.6338 4.7844 20 6 -0.3481 -9.9104 4.2743 21 6 0.7906 -9.3759 3.3803 22 1 0.4732 -9.3667 2.3376 23 6 2.0376 -10.2475 3.5421 24 9 3.0811 -9.7151 2.7773 25 9 2.4146 -10.2765 4.8891 26 6 2.0686 -4.6172 0.9625 27 6 1.8141 -3.6528 -0.2003 28 1 -0.4850 0.8400 0.0004 29 1 -0.6768 -2.6416 0.7356 30 1 0.0994 -1.3354 1.6675 31 1 -0.3817 -3.3857 3.0520 32 1 1.3482 -2.9688 2.9980 33 1 -0.0267 -5.0419 1.2287 34 1 1.3395 -5.3273 3.7936 35 1 0.5968 -7.8602 5.9758 36 1 -0.2333 -6.6229 4.9808 37 1 -1.7432 -8.2440 4.0284 38 1 -1.5932 -8.8341 5.7148 39 1 -1.0347 -10.5242 3.6914 40 1 0.0587 -10.4798 5.1101 41 1 1.8196 -11.2603 3.2035 42 1 2.9035 -4.2531 1.5612 43 1 2.3059 -5.6058 0.5696 44 1 1.0403 -4.0606 -0.8508 45 1 2.7332 -3.5125 -0.7692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003011810.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:33 Heat of formation + Delta-G solvation = -139.997687 kcal Electronic energy + Delta-G solvation = -27629.487943 eV Core-core repulsion = 23509.986600 eV Total energy + Delta-G solvation = -4119.501343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.17509 -47.13099 -40.30379 -38.02766 -36.82845 -34.45361 -32.23434 -30.67339 -30.32300 -29.81611 -28.79828 -25.34231 -24.83336 -22.57556 -22.15895 -21.43087 -20.70670 -19.78326 -19.15585 -18.12706 -17.27989 -17.01782 -16.87323 -16.30027 -15.96915 -15.12546 -15.03093 -14.68499 -14.14592 -13.99099 -13.79355 -13.63864 -13.53019 -13.49499 -13.12982 -13.00184 -12.78853 -12.58508 -12.37904 -11.75928 -11.51169 -11.46732 -11.42253 -11.21598 -11.14202 -11.08763 -10.86898 -10.82541 -10.70895 -10.49400 -10.28111 -10.04245 -9.86161 -9.67677 -9.43568 -8.71575 -8.46038 -6.68540 -5.80098 -3.22117 2.74325 3.25718 3.37269 3.44079 3.46530 3.56401 3.88874 4.00512 4.21007 4.49312 4.55092 4.68045 4.71206 4.88682 5.06435 5.16606 5.22612 5.33349 5.35527 5.41336 5.43960 5.49056 5.52662 5.60025 5.67244 5.76921 5.86230 5.88840 6.00482 6.07812 6.27375 6.33924 6.52375 6.56766 6.58895 6.80157 6.91499 6.99514 7.30897 7.58196 7.71473 7.79605 8.37402 8.44257 9.20361 9.83588 10.40743 11.28904 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.027964 B = 0.002839 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.034895 B = 9859.493438 C =10274.905282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.151 3.849 13 N -0.721 5.721 14 C 0.520 3.480 15 O -0.540 6.540 16 C -0.111 4.111 17 H 0.101 0.899 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.117 4.117 21 C -0.139 4.139 22 H 0.128 0.872 23 C 0.266 3.734 24 F -0.202 7.202 25 F -0.206 7.206 26 C -0.139 4.139 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.396 0.604 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 -20.195 12.549 23.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.048 3.952 13 N -0.371 5.371 14 C 0.305 3.695 15 O -0.418 6.418 16 C -0.133 4.133 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.154 4.154 21 C -0.158 4.158 22 H 0.146 0.854 23 C 0.212 3.788 24 F -0.184 7.184 25 F -0.187 7.187 26 C -0.179 4.179 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.229 0.771 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.627 -20.295 11.753 23.461 hybrid contribution 0.811 1.072 0.450 1.417 sum 0.183 -19.223 12.203 22.770 Atomic orbital electron populations 1.70024 1.05256 1.25524 1.53981 1.25053 0.95292 0.98422 1.00895 0.86303 0.79145 0.83614 0.77746 1.21382 1.21566 1.20497 1.19187 0.92590 0.84762 1.41662 0.91671 1.44093 1.35844 1.01662 1.49960 1.20737 0.88892 0.97891 0.87653 1.22536 1.00493 0.94778 1.00828 1.21050 0.98484 0.88234 0.87439 1.46304 1.68507 1.06429 1.15835 1.20273 0.76969 0.83225 0.89006 1.90654 1.46644 1.78029 1.26448 1.21894 1.02314 0.93622 0.95453 0.88087 1.22388 0.95369 1.00515 0.96955 1.22467 0.97311 0.94683 1.01454 1.22379 0.96054 0.98241 0.98751 1.23024 0.94048 0.93424 1.05316 0.85402 1.21937 0.84326 0.99233 0.73305 1.93011 1.61168 1.88708 1.75488 1.92960 1.92584 1.97693 1.35510 1.22374 0.97152 0.99546 0.98877 1.20874 0.97888 0.86536 0.92638 0.93615 0.96139 0.89032 0.92786 0.92185 0.90070 0.77074 0.90253 0.90589 0.90924 0.90786 0.90547 0.90584 0.87139 0.92344 0.92731 0.96217 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 11.20 55.49 0.62 -25.43 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.55 29.59 -169.99 -5.03 16.53 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.89 2.99 -172.32 -0.52 -15.41 16 10 C 0.17 4.10 5.30 -3.71 -0.02 4.08 16 11 C -0.15 -2.67 5.55 -26.61 -0.15 -2.81 16 12 C 0.15 2.63 2.41 -67.89 -0.16 2.47 16 13 N -0.72 -10.06 4.78 -53.77 -0.26 -10.31 16 14 C 0.52 7.38 7.03 -10.99 -0.08 7.30 16 15 O -0.54 -9.61 14.87 5.56 0.08 -9.53 16 16 C -0.11 -1.17 2.58 -90.65 -0.23 -1.40 16 17 H 0.10 1.05 7.32 -51.93 -0.38 0.67 16 18 C -0.11 -0.95 6.35 -25.07 -0.16 -1.11 16 19 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 20 C -0.12 -0.84 6.29 -25.04 -0.16 -1.00 16 21 C -0.14 -1.32 2.75 -89.48 -0.25 -1.56 16 22 H 0.13 1.46 6.39 -51.93 -0.33 1.13 16 23 C 0.27 2.36 4.73 37.16 0.18 2.53 16 24 F -0.20 -2.43 16.91 2.25 0.04 -2.39 16 25 F -0.21 -1.98 16.09 2.25 0.04 -1.95 16 26 C -0.14 -2.60 5.65 -26.61 -0.15 -2.75 16 27 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 28 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 34 H 0.40 4.49 8.50 -40.82 -0.35 4.15 16 35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.65 7.50 -51.93 -0.39 0.26 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.49 7.25 -51.93 -0.38 0.11 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -31.58 358.60 -8.37 -39.95 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -7.14 Total: 2.43 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.61 Total: 0.71 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: -0.15 Total: -51.15 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.34 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.58 -8.37 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003011810.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.046 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds