Wall clock time and date at job start Tue Mar 31 2020 10:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99874 * 2 1 4 4 H 1.48498 * 109.46928 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46829 * 299.99570 * 3 2 1 6 6 H 1.48496 * 109.47022 * 59.99784 * 3 2 1 7 7 C 1.38812 * 119.99808 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99814 * 197.37753 * 7 2 1 9 9 N 1.36930 * 120.00086 * 17.38197 * 7 2 1 10 10 C 1.46931 * 120.62917 * 207.68079 * 9 7 2 11 11 C 1.53192 * 108.77311 * 233.58530 * 10 9 7 12 12 C 1.53041 * 109.31464 * 305.36411 * 11 10 9 13 13 N 1.46498 * 109.46157 * 181.38709 * 12 11 10 14 14 C 1.34776 * 120.00244 * 155.00239 * 13 12 11 15 15 O 1.21286 * 119.99595 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00449 * 180.02562 * 14 13 12 17 17 H 1.08998 * 110.01643 * 58.60014 * 16 14 13 18 18 C 1.54268 * 110.06837 * 297.18814 * 16 14 13 19 19 C 1.54888 * 104.19584 * 264.30354 * 18 16 14 20 20 C 1.54893 * 102.74704 * 322.05750 * 19 18 16 21 21 C 1.53869 * 110.03635 * 179.97438 * 16 14 13 22 22 H 1.09003 * 110.03095 * 359.97438 * 21 16 14 23 23 C 1.53002 * 110.03341 * 238.61773 * 21 16 14 24 24 F 1.39899 * 109.47210 * 64.99306 * 23 21 16 25 25 F 1.39901 * 109.46694 * 304.99620 * 23 21 16 26 26 C 1.53035 * 109.53940 * 61.36501 * 12 11 10 27 27 C 1.46928 * 120.63312 * 27.65560 * 9 7 2 28 28 H 0.97000 * 119.99933 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.59089 * 113.79979 * 10 9 7 30 30 H 1.08998 * 109.58776 * 353.36791 * 10 9 7 31 31 H 1.09002 * 109.50071 * 185.41396 * 11 10 9 32 32 H 1.08998 * 109.49816 * 65.31636 * 11 10 9 33 33 H 1.09000 * 109.45952 * 301.36024 * 12 11 10 34 34 H 0.97004 * 120.00094 * 334.99682 * 13 12 11 35 35 H 1.09001 * 110.48986 * 22.98107 * 18 16 14 36 36 H 1.09006 * 110.48795 * 145.49495 * 18 16 14 37 37 H 1.08992 * 110.76228 * 80.37272 * 19 18 16 38 38 H 1.09006 * 110.75446 * 203.56132 * 19 18 16 39 39 H 1.09004 * 110.48379 * 279.26358 * 20 19 18 40 40 H 1.08999 * 110.48680 * 156.62428 * 20 19 18 41 41 H 1.09001 * 109.47119 * 184.99794 * 23 21 16 42 42 H 1.09009 * 109.49837 * 58.58491 * 26 12 11 43 43 H 1.08995 * 109.50369 * 178.68742 * 26 12 11 44 44 H 1.09003 * 109.58685 * 246.20153 * 27 9 7 45 45 H 1.08996 * 109.58509 * 6.62518 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2799 9 7 1.3725 -2.3611 -0.3532 10 6 1.8193 -3.6547 0.1815 11 6 2.0744 -4.6101 -0.9885 12 6 0.8188 -4.6900 -1.8598 13 7 1.0479 -5.6284 -2.9612 14 6 0.0042 -6.2485 -3.5465 15 8 -1.1248 -6.0300 -3.1609 16 6 0.2398 -7.2142 -4.6791 17 1 0.8918 -8.0234 -4.3499 18 6 0.8740 -6.4793 -5.8781 19 6 -0.3293 -6.1279 -6.7878 20 6 -1.2350 -7.3773 -6.6544 21 6 -1.1010 -7.7856 -5.1723 22 1 -1.9222 -7.3648 -4.5921 23 6 -1.0989 -9.3105 -5.0464 24 9 -1.0262 -9.6667 -3.6955 25 9 0.0063 -9.8330 -5.7266 26 6 0.5009 -3.3050 -2.4278 27 6 0.2280 -2.3347 -1.2742 28 1 -0.4850 0.8401 -0.0004 29 1 1.0469 -4.0687 0.8296 30 1 2.7400 -3.5173 0.7484 31 1 2.3136 -5.6013 -0.6033 32 1 2.9083 -4.2402 -1.5851 33 1 -0.0204 -5.0362 -1.2565 34 1 1.9509 -5.8034 -3.2694 35 1 1.3788 -5.5721 -5.5459 36 1 1.5718 -7.1335 -6.4009 37 1 -0.8425 -5.2381 -6.4231 38 1 -0.0061 -5.9899 -7.8197 39 1 -0.8795 -8.1772 -7.3039 40 1 -2.2693 -7.1255 -6.8888 41 1 -2.0152 -9.7120 -5.4793 42 1 1.3496 -2.9473 -3.0109 43 1 -0.3798 -3.3672 -3.0669 44 1 -0.6743 -2.6411 -0.7447 45 1 0.0987 -1.3264 -1.6675 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003011811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:36 Heat of formation + Delta-G solvation = -139.780070 kcal Electronic energy + Delta-G solvation = -27684.474541 eV Core-core repulsion = 23564.982634 eV Total energy + Delta-G solvation = -4119.491906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.17182 -47.12849 -40.28323 -38.01542 -36.82027 -34.44929 -32.23523 -30.64475 -30.30406 -29.80742 -28.81893 -25.32081 -24.82580 -22.50436 -22.22100 -21.42606 -20.70803 -19.73741 -19.19657 -18.07585 -17.29293 -16.98983 -16.88218 -16.33817 -15.89432 -15.11444 -15.02816 -14.66141 -14.11161 -13.99975 -13.88513 -13.53545 -13.51173 -13.45910 -13.16995 -13.00940 -12.75061 -12.59858 -12.39730 -11.73357 -11.51277 -11.44912 -11.40837 -11.19519 -11.14100 -11.06947 -10.91919 -10.83312 -10.74105 -10.38667 -10.22676 -10.06486 -9.78455 -9.75646 -9.41731 -8.71164 -8.42748 -6.69426 -5.78839 -3.21448 2.76621 3.26839 3.37178 3.44722 3.46835 3.57034 3.89951 4.02323 4.22205 4.49195 4.57002 4.69165 4.73582 4.90794 5.08002 5.17975 5.24553 5.31696 5.38286 5.40720 5.44872 5.46091 5.54000 5.63445 5.70963 5.79998 5.82974 5.91039 6.03842 6.08124 6.24065 6.36235 6.43697 6.60552 6.64883 6.76555 6.91456 6.94308 7.37038 7.66353 7.72311 7.79579 8.39688 8.44580 9.20600 9.84038 10.40644 11.29682 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.026430 B = 0.002918 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.134505 B = 9593.299521 C = 9972.743764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.150 3.850 13 N -0.722 5.722 14 C 0.519 3.481 15 O -0.538 6.538 16 C -0.111 4.111 17 H 0.100 0.900 18 C -0.114 4.114 19 C -0.122 4.122 20 C -0.116 4.116 21 C -0.139 4.139 22 H 0.129 0.871 23 C 0.266 3.734 24 F -0.203 7.203 25 F -0.206 7.206 26 C -0.145 4.145 27 C 0.174 3.826 28 H 0.253 0.747 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.395 0.605 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.176 -17.837 -14.642 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.047 3.953 13 N -0.372 5.372 14 C 0.304 3.696 15 O -0.415 6.415 16 C -0.132 4.132 17 H 0.119 0.881 18 C -0.152 4.152 19 C -0.159 4.159 20 C -0.153 4.153 21 C -0.158 4.158 22 H 0.146 0.854 23 C 0.212 3.788 24 F -0.185 7.185 25 F -0.188 7.188 26 C -0.185 4.185 27 C 0.047 3.953 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.129 0.871 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.710 -17.541 -14.299 22.641 hybrid contribution 0.961 0.633 -0.041 1.151 sum 0.250 -16.907 -14.340 22.171 Atomic orbital electron populations 1.70052 1.05267 1.25428 1.53764 1.25054 0.95276 0.98450 1.00895 0.86235 0.79339 0.83985 0.77278 1.20264 1.21568 1.21726 1.19220 0.92730 0.84832 1.41555 0.91580 1.44119 1.35876 1.01396 1.50177 1.20840 0.97971 0.86737 0.92330 1.22335 0.96703 0.99737 0.99112 1.21052 0.98723 0.88822 0.86679 1.46276 1.09055 1.45088 1.36747 1.20275 0.85195 0.80927 0.83161 1.90671 1.22645 1.64176 1.63996 1.21885 0.97577 0.98363 0.95395 0.88145 1.22386 0.97987 1.00314 0.94538 1.22469 0.95726 0.97882 0.99870 1.22365 1.01010 0.98575 0.93382 1.23028 1.00788 0.92139 0.99883 0.85365 1.21957 0.87974 0.93937 0.74926 1.93007 1.97034 1.93214 1.35195 1.92960 1.57597 1.88392 1.79806 1.22549 1.00352 0.95125 1.00501 1.20760 0.88637 0.98186 0.87692 0.93641 0.96199 0.92333 0.92635 0.91864 0.90080 0.77187 0.90574 0.90290 0.90809 0.90778 0.90715 0.90494 0.87123 0.92726 0.92936 0.96185 0.89234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.32 11.19 55.49 0.62 -25.70 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -14.83 2.99 -172.32 -0.52 -15.34 16 10 C 0.15 3.07 6.52 -3.71 -0.02 3.04 16 11 C -0.14 -2.32 5.55 -26.61 -0.15 -2.47 16 12 C 0.15 2.62 2.41 -67.89 -0.16 2.46 16 13 N -0.72 -10.08 4.78 -53.77 -0.26 -10.34 16 14 C 0.52 7.52 7.04 -10.99 -0.08 7.44 16 15 O -0.54 -9.88 14.87 5.55 0.08 -9.79 16 16 C -0.11 -1.18 2.60 -90.66 -0.24 -1.42 16 17 H 0.10 1.03 7.29 -51.93 -0.38 0.65 16 18 C -0.11 -1.00 6.35 -25.07 -0.16 -1.16 16 19 C -0.12 -1.02 6.91 -24.74 -0.17 -1.19 16 20 C -0.12 -0.88 6.30 -25.05 -0.16 -1.04 16 21 C -0.14 -1.36 2.73 -89.48 -0.24 -1.60 16 22 H 0.13 1.52 6.39 -51.93 -0.33 1.19 16 23 C 0.27 2.37 4.66 37.16 0.17 2.54 16 24 F -0.20 -2.42 17.14 2.25 0.04 -2.39 16 25 F -0.21 -1.98 16.08 2.25 0.04 -1.95 16 26 C -0.14 -2.88 5.65 -26.61 -0.15 -3.03 16 27 C 0.17 4.23 5.31 -3.71 -0.02 4.21 16 28 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 34 H 0.39 4.39 8.50 -40.82 -0.35 4.04 16 35 H 0.08 0.70 7.51 -51.93 -0.39 0.31 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.49 7.43 -51.93 -0.39 0.10 16 40 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.09 2.44 6.04 -51.93 -0.31 2.12 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -31.94 358.90 -8.37 -40.32 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.15 Total: 2.51 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.61 Total: 0.69 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: -0.15 Total: -51.38 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.08 Total: -9.79 kcal Atomic # 9 Polarization: -4.41 SS G_CDS: 0.07 Total: -4.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.94 -8.37 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003011811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.462 kcal (2) G-P(sol) polarization free energy of solvation -31.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds