Wall clock time and date at job start Tue Mar 31 2020 12:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 F 1.39896 * 109.47314 * 2 1 4 4 F 1.39902 * 109.46904 * 119.99687 * 2 1 3 5 5 C 1.50700 * 109.47249 * 239.99461 * 2 1 3 6 6 O 1.21281 * 120.00261 * 337.84417 * 5 2 1 7 7 N 1.34774 * 119.99869 * 157.84315 * 5 2 1 8 8 C 1.46936 * 120.63284 * 4.36436 * 7 5 2 9 9 C 1.53626 * 108.54311 * 126.36834 * 8 7 5 10 10 C 1.53044 * 109.24093 * 54.85938 * 9 8 7 11 11 C 1.52998 * 109.44764 * 178.49772 * 10 9 8 12 12 H 1.09001 * 109.87586 * 183.06145 * 11 10 9 13 13 C 1.54322 * 109.88417 * 62.04795 * 11 10 9 14 14 C 1.55161 * 102.94191 * 218.39325 * 13 11 10 15 15 C 1.54903 * 101.58244 * 35.49770 * 14 13 11 16 16 N 1.47021 * 109.88089 * 304.24127 * 11 10 9 17 17 C 1.36942 * 125.64748 * 298.33362 * 16 11 10 18 18 H 1.08002 * 119.99668 * 347.43968 * 17 16 11 19 19 C 1.38806 * 120.00022 * 167.43517 * 17 16 11 20 20 N 1.31613 * 120.00120 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00038 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46851 * 59.99898 * 21 19 17 23 23 H 1.48501 * 109.47131 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47296 * 300.00042 * 21 19 17 25 25 C 1.53046 * 109.53786 * 298.50913 * 10 9 8 26 26 C 1.46928 * 120.63401 * 184.64535 * 7 5 2 27 27 H 1.09010 * 109.46989 * 60.00323 * 1 2 3 28 28 H 1.09001 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47761 * 300.00585 * 1 2 3 30 30 H 1.09000 * 109.58436 * 246.20354 * 8 7 5 31 31 H 1.09003 * 109.58169 * 6.62837 * 8 7 5 32 32 H 1.08999 * 109.63313 * 294.86406 * 9 8 7 33 33 H 1.09001 * 109.43014 * 174.72330 * 9 8 7 34 34 H 1.08993 * 109.45953 * 58.52785 * 10 9 8 35 35 H 1.09006 * 110.72172 * 336.75168 * 13 11 10 36 36 H 1.09003 * 110.72214 * 99.84881 * 13 11 10 37 37 H 1.08996 * 111.00444 * 153.58080 * 14 13 11 38 38 H 1.09002 * 111.00185 * 277.42379 * 14 13 11 39 39 H 1.09009 * 110.36733 * 81.83318 * 15 14 13 40 40 H 1.08996 * 110.36977 * 204.04296 * 15 14 13 41 41 H 0.97006 * 119.99872 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.49270 * 301.41714 * 25 10 9 43 43 H 1.08994 * 109.49586 * 181.31773 * 25 10 9 44 44 H 1.09000 * 109.57985 * 353.37147 * 26 7 5 45 45 H 1.09000 * 109.59035 * 113.79526 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9962 -0.6595 1.1423 5 6 2.0323 -0.7105 -1.2304 6 8 1.3173 -1.5016 -1.8083 7 7 3.2761 -0.4668 -1.6886 8 6 4.1877 0.4154 -0.9471 9 6 5.5024 -0.3392 -0.6976 10 6 6.0589 -0.8379 -2.0332 11 6 7.3877 -1.5578 -1.7944 12 1 7.8172 -1.8685 -2.7468 13 6 7.1624 -2.7902 -0.8933 14 6 8.4187 -2.7892 0.0172 15 6 8.6614 -1.2716 0.2107 16 7 8.3198 -0.6660 -1.0892 17 6 8.7928 0.5291 -1.5618 18 1 8.6504 0.7940 -2.5991 19 6 9.4552 1.4000 -0.7076 20 7 9.6291 1.0770 0.5563 21 14 10.0999 3.0305 -1.3522 22 1 8.9693 3.8360 -1.8798 23 1 10.7627 3.7716 -0.2491 24 1 11.0794 2.7804 -2.4398 25 6 5.0620 -1.8067 -2.6734 26 6 3.7443 -1.0733 -2.9423 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5139 0.8899 30 1 4.3840 1.3134 -1.5329 31 1 3.7356 0.6898 0.0060 32 1 5.3180 -1.1888 -0.0402 33 1 6.2231 0.3326 -0.2313 34 1 6.2198 0.0100 -2.6989 35 1 6.2558 -2.6733 -0.2996 36 1 7.1160 -3.7011 -1.4902 37 1 8.2111 -3.2764 0.9699 38 1 9.2648 -3.2594 -0.4839 39 1 8.0119 -0.8803 0.9939 40 1 9.7065 -1.0828 0.4562 41 1 10.0917 1.6858 1.1533 42 1 4.8818 -2.6425 -1.9973 43 1 5.4693 -2.1795 -3.6131 44 1 2.9996 -1.7814 -3.3060 45 1 3.9052 -0.2942 -3.6874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004327503.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:24 Heat of formation + Delta-G solvation = -106.200048 kcal Electronic energy + Delta-G solvation = -28802.703045 eV Core-core repulsion = 24684.667277 eV Total energy + Delta-G solvation = -4118.035767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.46468 -47.36483 -40.19452 -38.54817 -36.52878 -33.15045 -32.22906 -31.76930 -30.85352 -29.34522 -27.88599 -25.47132 -24.58142 -23.47924 -22.89194 -21.29264 -20.31090 -19.77363 -18.70557 -17.97412 -17.71592 -17.01821 -16.59971 -15.94276 -15.19853 -15.01326 -14.78332 -14.62347 -14.32291 -13.91275 -13.81009 -13.67328 -13.60259 -13.34210 -13.12488 -12.84393 -12.69623 -12.66562 -12.14114 -12.11922 -11.90482 -11.83922 -11.46210 -11.27529 -10.98792 -10.91499 -10.81569 -10.49886 -10.20194 -10.08808 -9.95608 -9.83375 -9.68060 -9.57764 -9.43308 -8.72272 -8.56460 -6.77533 -5.73093 -3.08141 2.03140 2.50282 3.38473 3.43851 3.44590 3.49899 3.70311 4.16954 4.34298 4.48175 4.97166 5.05930 5.12639 5.20355 5.28153 5.34169 5.40323 5.44261 5.54287 5.58218 5.66957 5.71676 5.75989 5.81874 5.91513 5.93078 6.12144 6.16301 6.27424 6.33777 6.41249 6.48627 6.58687 6.63340 6.77476 6.93822 7.00857 7.14250 7.16692 7.57648 7.62986 7.67909 7.82339 8.29957 9.21418 9.82899 10.51990 11.38044 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.004397 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.240799 B = 6366.955009 C = 6994.582225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.280 3.720 3 F -0.183 7.183 4 F -0.181 7.181 5 C 0.484 3.516 6 O -0.519 6.519 7 N -0.583 5.583 8 C 0.087 3.913 9 C -0.117 4.117 10 C -0.093 4.093 11 C 0.167 3.833 12 H 0.031 0.969 13 C -0.128 4.128 14 C -0.150 4.150 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.224 4.224 18 H 0.072 0.928 19 C -0.004 4.004 20 N -0.918 5.918 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.129 4.129 26 C 0.110 3.890 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.022 0.978 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.856 -3.929 -2.106 15.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.241 3.759 3 F -0.164 7.164 4 F -0.162 7.162 5 C 0.267 3.733 6 O -0.396 6.396 7 N -0.314 5.314 8 C -0.034 4.034 9 C -0.155 4.155 10 C -0.114 4.114 11 C 0.060 3.940 12 H 0.049 0.951 13 C -0.165 4.165 14 C -0.189 4.189 15 C 0.048 3.952 16 N -0.317 5.317 17 C -0.353 4.353 18 H 0.090 0.910 19 C -0.200 4.200 20 N -0.565 5.565 21 Si 0.737 3.263 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.167 4.167 26 C -0.011 4.011 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.034 -4.130 -2.297 15.759 hybrid contribution 0.554 1.112 -0.132 1.250 sum -14.480 -3.018 -2.429 14.989 Atomic orbital electron populations 1.22604 0.88955 1.06622 1.05530 1.21347 0.95633 0.75774 0.83162 1.93012 1.89771 1.37004 1.96658 1.93101 1.90479 1.80733 1.51896 1.20707 0.82929 0.83695 0.86012 1.90729 1.56124 1.34593 1.58117 1.48301 1.12131 1.46579 1.24431 1.22538 0.91091 0.92792 0.97011 1.21960 0.94735 1.00664 0.98101 1.21601 0.95545 0.98037 0.96249 1.20906 0.88706 0.89888 0.94541 0.95097 1.22649 0.98449 0.97193 0.98247 1.23017 0.96933 1.00816 0.98152 1.21433 1.00841 0.85498 0.87405 1.44486 1.49400 1.20535 1.17242 1.18889 1.30493 0.92273 0.93639 0.90982 1.24813 1.01622 0.98150 0.95440 1.69921 1.46695 1.36341 1.03509 0.86298 0.78639 0.83911 0.77492 1.21212 1.21676 1.21270 1.22011 0.94245 0.98936 1.01553 1.21778 0.97106 0.97843 0.84416 0.88907 0.88167 0.89217 0.90526 0.88989 0.92296 0.87979 0.91294 0.91726 0.92769 0.92674 0.92577 0.95965 0.90968 0.93711 0.91541 0.90863 0.89265 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.88 37.15 0.33 -1.30 16 2 C 0.28 3.48 1.80 -27.89 -0.05 3.43 16 3 F -0.18 -2.34 14.04 2.25 0.03 -2.31 16 4 F -0.18 -2.47 16.79 2.25 0.04 -2.43 16 5 C 0.48 6.91 7.15 -10.99 -0.08 6.83 16 6 O -0.52 -8.20 15.47 5.56 0.09 -8.12 16 7 N -0.58 -8.30 2.97 -172.49 -0.51 -8.81 16 8 C 0.09 1.30 5.65 -3.48 -0.02 1.28 16 9 C -0.12 -2.01 4.95 -26.38 -0.13 -2.14 16 10 C -0.09 -1.57 1.91 -90.57 -0.17 -1.74 16 11 C 0.17 3.20 2.98 -66.96 -0.20 3.01 16 12 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 13 C -0.13 -2.17 5.19 -24.90 -0.13 -2.30 16 14 C -0.15 -2.80 7.08 -24.58 -0.17 -2.98 16 15 C 0.17 4.02 5.45 -2.54 -0.01 4.01 16 16 N -0.59 -13.96 2.18 -162.58 -0.35 -14.32 16 17 C -0.22 -5.84 9.90 -15.06 -0.15 -5.99 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C 0.00 -0.10 5.47 -17.44 -0.10 -0.19 16 20 N -0.92 -25.82 10.50 55.49 0.58 -25.24 16 21 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 C -0.13 -1.77 5.06 -26.61 -0.13 -1.90 16 26 C 0.11 1.45 6.44 -3.71 -0.02 1.42 16 27 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 28 H 0.10 0.90 7.89 -51.93 -0.41 0.49 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.35 4.83 -51.93 -0.25 1.10 16 32 H 0.06 1.03 6.24 -51.93 -0.32 0.70 16 33 H 0.10 2.16 7.47 -51.93 -0.39 1.77 16 34 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 35 H 0.06 1.08 5.50 -51.93 -0.29 0.80 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.56 8.10 -51.92 -0.42 0.14 16 40 H 0.07 1.90 6.78 -51.93 -0.35 1.55 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 43 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.16 7.00 -51.93 -0.36 0.80 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -28.72 349.01 -7.86 -36.59 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.93 Total: 1.59 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.04 Total: 1.42 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.28 Total: -48.36 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -4.82 SS G_CDS: 0.07 Total: -4.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -28.72 -7.86 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004327503.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.614 kcal (2) G-P(sol) polarization free energy of solvation -28.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds