Wall clock time and date at job start Tue Mar 31 2020 11:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.34776 * 120.00116 * 2 1 4 4 O 1.21283 * 120.00245 * 184.73241 * 3 2 1 5 5 C 1.50705 * 119.99851 * 5.00832 * 3 2 1 6 6 C 1.53000 * 112.84995 * 295.78434 * 5 3 2 7 7 C 1.53785 * 113.61422 * 164.58844 * 5 3 2 8 8 C 1.53954 * 87.01835 * 220.04991 * 7 5 3 9 9 F 1.39905 * 113.53512 * 270.81313 * 8 7 5 10 10 F 1.39891 * 113.66680 * 139.93707 * 8 7 5 11 11 C 1.53775 * 87.11234 * 25.36179 * 8 7 5 12 12 C 1.46505 * 120.00291 * 179.97438 * 2 1 3 13 13 C 1.53031 * 109.45899 * 60.02751 * 12 2 1 14 14 C 1.53197 * 109.31269 * 178.60511 * 13 12 2 15 15 N 1.46921 * 108.76637 * 54.65298 * 14 13 12 16 16 C 1.36941 * 120.62982 * 126.36056 * 15 14 13 17 17 H 1.07994 * 119.99838 * 206.83522 * 16 15 14 18 18 C 1.38813 * 119.99595 * 26.84399 * 16 15 14 19 19 N 1.31620 * 120.00467 * 23.00780 * 18 16 15 20 20 Si 1.86802 * 119.99636 * 203.00993 * 18 16 15 21 21 H 1.48501 * 109.47100 * 94.98611 * 20 18 16 22 22 H 1.48500 * 109.47233 * 214.98583 * 20 18 16 23 23 H 1.48498 * 109.47159 * 334.98670 * 20 18 16 24 24 C 1.46922 * 118.74013 * 306.38870 * 15 14 13 25 25 C 1.53043 * 109.45817 * 299.97261 * 12 2 1 26 26 H 1.09000 * 109.47379 * 84.76873 * 1 2 3 27 27 H 1.08999 * 109.47190 * 204.76862 * 1 2 3 28 28 H 1.09004 * 109.47573 * 324.77084 * 1 2 3 29 29 H 1.09001 * 109.46815 * 63.30754 * 6 5 3 30 30 H 1.08996 * 109.46924 * 183.30829 * 6 5 3 31 31 H 1.08997 * 109.47283 * 303.31625 * 6 5 3 32 32 H 1.09001 * 113.61161 * 334.56859 * 7 5 3 33 33 H 1.09002 * 113.61330 * 105.47302 * 7 5 3 34 34 H 1.09000 * 113.61446 * 220.09054 * 11 8 7 35 35 H 1.09005 * 113.61555 * 89.18879 * 11 8 7 36 36 H 1.09000 * 109.46081 * 180.02562 * 12 2 1 37 37 H 1.09006 * 109.49962 * 298.56744 * 13 12 2 38 38 H 1.09000 * 109.50215 * 58.66453 * 13 12 2 39 39 H 1.08999 * 109.59288 * 294.86594 * 14 13 12 40 40 H 1.08998 * 109.70012 * 174.50695 * 14 13 12 41 41 H 0.96996 * 120.00145 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58563 * 293.81696 * 24 15 14 43 43 H 1.08999 * 109.70374 * 173.46597 * 24 15 14 44 44 H 1.09005 * 109.49814 * 301.33554 * 25 12 2 45 45 H 1.09002 * 109.49629 * 61.40056 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3485 1.1690 -0.0867 5 6 1.3896 2.4698 0.1139 6 6 0.4681 2.7316 -1.0791 7 6 2.2858 3.6665 0.4743 8 6 1.1456 4.1407 1.3936 9 9 0.2178 4.9681 0.7517 10 9 1.5882 4.6628 2.6136 11 6 0.7052 2.6697 1.4764 12 6 2.1975 -1.2687 0.0006 13 6 1.8281 -2.0712 -1.2490 14 6 2.6220 -3.3814 -1.2627 15 7 2.3850 -4.0910 0.0017 16 6 1.9510 -5.3898 0.0022 17 1 1.3796 -5.7679 0.8369 18 6 2.2459 -6.2204 -1.0702 19 7 3.2753 -5.9535 -1.8459 20 14 1.1817 -7.7169 -1.4127 21 1 0.1494 -7.3698 -2.4221 22 1 2.0303 -8.8196 -1.9315 23 1 0.5193 -8.1512 -0.1565 24 6 2.6217 -3.3804 1.2657 25 6 1.8281 -2.0702 1.2510 26 1 -0.3634 0.0937 -1.0234 27 1 -0.3633 -0.9331 0.4305 28 1 -0.3634 0.8395 0.5928 29 1 -0.3032 1.9624 -1.1180 30 1 0.0004 3.7099 -0.9691 31 1 1.0506 2.7086 -2.0000 32 1 3.1922 3.3870 1.0114 33 1 2.4787 4.3356 -0.3643 34 1 -0.3761 2.5352 1.4458 35 1 1.1786 2.1172 2.2881 36 1 3.2691 -1.0693 0.0009 37 1 0.7608 -2.2925 -1.2371 38 1 2.0697 -1.4903 -2.1391 39 1 3.6850 -3.1636 -1.3658 40 1 2.2935 -4.0014 -2.0969 41 1 3.4815 -6.5341 -2.5950 42 1 3.6847 -3.1626 1.3689 43 1 2.2924 -3.9977 2.1016 44 1 2.0697 -1.4884 2.1405 45 1 0.7607 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001006276151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:08 Heat of formation + Delta-G solvation = -86.273767 kcal Electronic energy + Delta-G solvation = -28050.397285 eV Core-core repulsion = 23933.225586 eV Total energy + Delta-G solvation = -4117.171699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.15446 -47.46902 -40.80752 -38.25965 -36.95314 -35.22874 -32.54325 -30.47113 -29.92147 -29.21481 -27.16635 -26.62263 -25.51167 -24.19576 -22.27041 -22.23440 -20.68537 -18.98089 -18.89726 -18.00324 -17.05525 -16.93604 -16.79309 -16.17828 -15.60012 -15.30491 -14.86601 -14.47945 -14.41434 -14.11311 -13.90120 -13.84469 -13.70908 -13.55538 -13.08447 -12.96752 -12.79374 -12.58217 -12.55019 -12.45016 -12.14026 -12.07028 -11.51966 -11.51386 -11.30341 -11.19769 -10.82891 -10.76670 -10.75036 -10.42992 -10.24396 -10.13812 -9.81529 -9.71399 -9.48292 -8.56395 -8.37226 -6.76471 -5.84547 -3.22651 2.53524 2.92766 3.13983 3.35362 3.42314 3.43288 3.44574 3.83643 3.85685 4.06543 4.46915 4.49900 4.72021 4.98289 4.99941 5.08476 5.18346 5.24428 5.28179 5.31836 5.35534 5.43031 5.45135 5.50480 5.58046 5.63920 5.68495 5.80328 5.87524 6.00760 6.18219 6.25310 6.41270 6.51063 6.55806 6.71607 6.82615 6.89781 7.25518 7.44786 7.56498 7.77629 8.17464 8.38584 9.15275 9.80112 10.36883 11.24443 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002916 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.082229 B = 9600.477925 C = 9664.111735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.601 5.601 3 C 0.531 3.469 4 O -0.536 6.536 5 C -0.101 4.101 6 C -0.145 4.145 7 C -0.137 4.137 8 C 0.256 3.744 9 F -0.177 7.177 10 F -0.188 7.188 11 C -0.151 4.151 12 C 0.144 3.856 13 C -0.143 4.143 14 C 0.174 3.826 15 N -0.591 5.591 16 C -0.258 4.258 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.896 5.896 20 Si 0.898 3.102 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.278 1.278 24 C 0.148 3.852 25 C -0.138 4.138 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.085 0.915 41 H 0.254 0.746 42 H 0.020 0.980 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 19.332 4.206 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.333 5.333 3 C 0.317 3.683 4 O -0.413 6.413 5 C -0.104 4.104 6 C -0.202 4.202 7 C -0.175 4.175 8 C 0.219 3.781 9 F -0.158 7.158 10 F -0.169 7.169 11 C -0.189 4.189 12 C 0.043 3.957 13 C -0.184 4.184 14 C 0.048 3.952 15 N -0.314 5.314 16 C -0.387 4.387 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.539 5.539 20 Si 0.727 3.273 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.203 1.203 24 C 0.021 3.979 25 C -0.178 4.178 26 H 0.076 0.924 27 H 0.098 0.902 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.181 19.234 4.044 20.925 hybrid contribution -0.709 -0.604 -0.222 0.958 sum -7.890 18.630 3.822 20.589 Atomic orbital electron populations 1.21998 0.80202 1.03406 1.01720 1.48075 1.06916 1.06185 1.72102 1.19918 0.87494 0.84440 0.76424 1.90709 1.13895 1.86952 1.49749 1.21823 0.97508 0.94296 0.96769 1.21912 0.98864 1.03738 0.95651 1.24058 0.97631 0.95945 0.99879 1.22010 0.89489 0.86818 0.79738 1.92992 1.67155 1.74633 1.80981 1.93020 1.89364 1.89002 1.45502 1.24209 1.03771 0.92726 0.98195 1.21234 0.97274 0.80834 0.96401 1.22523 1.01598 0.98790 0.95442 1.20709 0.95409 0.88819 0.90307 1.44108 1.77795 1.10143 0.99352 1.19168 1.26997 0.86835 1.05728 0.91536 1.24984 0.96563 0.97540 1.00351 1.70112 1.24784 1.39556 1.19466 0.86345 0.80254 0.82397 0.78256 1.21478 1.21837 1.20342 1.20850 0.95817 0.90887 0.90374 1.22387 1.01438 0.98098 0.95892 0.92359 0.90208 0.91361 0.90406 0.90363 0.91083 0.85927 0.88193 0.87818 0.86470 0.88657 0.92353 0.93052 0.96080 0.89661 0.93585 0.96227 0.92394 0.92957 0.91973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.69 7.95 59.84 0.48 1.17 16 2 N -0.60 -8.06 2.76 -173.89 -0.48 -8.54 16 3 C 0.53 7.27 6.70 -10.98 -0.07 7.19 16 4 O -0.54 -9.46 15.45 5.55 0.09 -9.37 16 5 C -0.10 -0.98 0.70 -154.84 -0.11 -1.09 16 6 C -0.14 -1.16 8.69 37.16 0.32 -0.84 16 7 C -0.14 -1.31 6.71 -25.83 -0.17 -1.48 16 8 C 0.26 2.37 3.27 -25.83 -0.08 2.29 16 9 F -0.18 -1.70 15.48 2.25 0.03 -1.66 16 10 F -0.19 -2.03 17.41 2.25 0.04 -1.99 16 11 C -0.15 -1.23 5.65 -25.92 -0.15 -1.38 16 12 C 0.14 2.42 2.47 -67.89 -0.17 2.25 16 13 C -0.14 -2.64 5.34 -26.61 -0.14 -2.78 16 14 C 0.17 4.05 5.36 -3.71 -0.02 4.03 16 15 N -0.59 -14.39 2.99 -172.33 -0.52 -14.90 16 16 C -0.26 -6.91 9.55 -15.06 -0.14 -7.05 16 17 H 0.07 1.75 7.92 -52.49 -0.42 1.34 16 18 C 0.00 0.14 4.76 -17.43 -0.08 0.05 16 19 N -0.90 -25.73 11.51 55.49 0.64 -25.09 16 20 Si 0.90 21.21 29.61 -169.99 -5.03 16.18 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 C 0.15 3.01 6.51 -3.71 -0.02 2.99 16 25 C -0.14 -2.28 5.32 -26.61 -0.14 -2.42 16 26 H 0.06 0.53 7.12 -51.93 -0.37 0.16 16 27 H 0.08 0.83 6.47 -51.93 -0.34 0.50 16 28 H 0.07 0.51 4.46 -51.93 -0.23 0.28 16 29 H 0.08 0.55 5.14 -51.93 -0.27 0.28 16 30 H 0.08 0.57 6.14 -51.93 -0.32 0.25 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 1.28 7.68 -51.93 -0.40 0.88 16 33 H 0.10 0.85 8.10 -51.93 -0.42 0.43 16 34 H 0.10 0.65 7.14 -51.93 -0.37 0.28 16 35 H 0.12 0.97 8.09 -51.93 -0.42 0.55 16 36 H 0.10 1.85 6.91 -51.93 -0.36 1.49 16 37 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 2.21 6.16 -51.93 -0.32 1.90 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 44 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.00 6.72 -51.93 -0.35 0.65 16 LS Contribution 348.26 15.07 5.25 5.25 Total: -1.00 -30.87 348.26 -7.13 -38.00 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.64 Total: -0.80 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -0.51 Total: 2.93 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.36 Total: -48.53 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.07 Total: -3.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.87 -7.13 -38.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006276151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.276 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds