Wall clock time and date at job start Tue Mar 31 2020 11:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46488 * 1 3 3 C 1.34776 * 120.00116 * 2 1 4 4 O 1.21283 * 120.00245 * 184.73241 * 3 2 1 5 5 C 1.50705 * 119.99851 * 5.00832 * 3 2 1 6 6 C 1.53000 * 112.84995 * 295.78434 * 5 3 2 7 7 C 1.53785 * 113.61422 * 164.58844 * 5 3 2 8 8 C 1.53954 * 87.01835 * 220.04991 * 7 5 3 9 9 F 1.39905 * 113.53512 * 270.81313 * 8 7 5 10 10 F 1.39891 * 113.66680 * 139.93707 * 8 7 5 11 11 C 1.53775 * 87.11234 * 25.36179 * 8 7 5 12 12 C 1.46505 * 120.00291 * 179.97438 * 2 1 3 13 13 C 1.53031 * 109.45899 * 60.02751 * 12 2 1 14 14 C 1.53197 * 109.31269 * 178.60511 * 13 12 2 15 15 N 1.46921 * 108.76637 * 54.65298 * 14 13 12 16 16 C 1.36941 * 120.62982 * 126.36056 * 15 14 13 17 17 H 1.07994 * 119.99838 * 206.83522 * 16 15 14 18 18 C 1.38813 * 119.99595 * 26.84399 * 16 15 14 19 19 N 1.31620 * 120.00467 * 23.00780 * 18 16 15 20 20 Si 1.86802 * 119.99636 * 203.00993 * 18 16 15 21 21 H 1.48501 * 109.47100 * 94.98611 * 20 18 16 22 22 H 1.48500 * 109.47233 * 214.98583 * 20 18 16 23 23 H 1.48498 * 109.47159 * 334.98670 * 20 18 16 24 24 C 1.46922 * 118.74013 * 306.38870 * 15 14 13 25 25 C 1.53043 * 109.45817 * 299.97261 * 12 2 1 26 26 H 1.09000 * 109.47379 * 84.76873 * 1 2 3 27 27 H 1.08999 * 109.47190 * 204.76862 * 1 2 3 28 28 H 1.09004 * 109.47573 * 324.77084 * 1 2 3 29 29 H 1.09001 * 109.46815 * 63.30754 * 6 5 3 30 30 H 1.08996 * 109.46924 * 183.30829 * 6 5 3 31 31 H 1.08997 * 109.47283 * 303.31625 * 6 5 3 32 32 H 1.09001 * 113.61161 * 334.56859 * 7 5 3 33 33 H 1.09002 * 113.61330 * 105.47302 * 7 5 3 34 34 H 1.09000 * 113.61446 * 220.09054 * 11 8 7 35 35 H 1.09005 * 113.61555 * 89.18879 * 11 8 7 36 36 H 1.09000 * 109.46081 * 180.02562 * 12 2 1 37 37 H 1.09006 * 109.49962 * 298.56744 * 13 12 2 38 38 H 1.09000 * 109.50215 * 58.66453 * 13 12 2 39 39 H 1.08999 * 109.59288 * 294.86594 * 14 13 12 40 40 H 1.08998 * 109.70012 * 174.50695 * 14 13 12 41 41 H 0.96996 * 120.00145 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.58563 * 293.81696 * 24 15 14 43 43 H 1.08999 * 109.70374 * 173.46597 * 24 15 14 44 44 H 1.09005 * 109.49814 * 301.33554 * 25 12 2 45 45 H 1.09002 * 109.49629 * 61.40056 * 25 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3485 1.1690 -0.0867 5 6 1.3896 2.4698 0.1139 6 6 0.4681 2.7316 -1.0791 7 6 2.2858 3.6665 0.4743 8 6 1.1456 4.1407 1.3936 9 9 0.2178 4.9681 0.7517 10 9 1.5882 4.6628 2.6136 11 6 0.7052 2.6697 1.4764 12 6 2.1975 -1.2687 0.0006 13 6 1.8281 -2.0712 -1.2490 14 6 2.6220 -3.3814 -1.2627 15 7 2.3850 -4.0910 0.0017 16 6 1.9510 -5.3898 0.0022 17 1 1.3796 -5.7679 0.8369 18 6 2.2459 -6.2204 -1.0702 19 7 3.2753 -5.9535 -1.8459 20 14 1.1817 -7.7169 -1.4127 21 1 0.1494 -7.3698 -2.4221 22 1 2.0303 -8.8196 -1.9315 23 1 0.5193 -8.1512 -0.1565 24 6 2.6217 -3.3804 1.2657 25 6 1.8281 -2.0702 1.2510 26 1 -0.3634 0.0937 -1.0234 27 1 -0.3633 -0.9331 0.4305 28 1 -0.3634 0.8395 0.5928 29 1 -0.3032 1.9624 -1.1180 30 1 0.0004 3.7099 -0.9691 31 1 1.0506 2.7086 -2.0000 32 1 3.1922 3.3870 1.0114 33 1 2.4787 4.3356 -0.3643 34 1 -0.3761 2.5352 1.4458 35 1 1.1786 2.1172 2.2881 36 1 3.2691 -1.0693 0.0009 37 1 0.7608 -2.2925 -1.2371 38 1 2.0697 -1.4903 -2.1391 39 1 3.6850 -3.1636 -1.3658 40 1 2.2935 -4.0014 -2.0969 41 1 3.4815 -6.5341 -2.5950 42 1 3.6847 -3.1626 1.3689 43 1 2.2924 -3.9977 2.1016 44 1 2.0697 -1.4884 2.1405 45 1 0.7607 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001006276151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:07 Heat of formation + Delta-G solvation = -103.933883 kcal Electronic energy + Delta-G solvation = -28051.163085 eV Core-core repulsion = 23933.225586 eV Total energy + Delta-G solvation = -4117.937499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.89916 -48.22712 -41.81238 -39.53971 -38.14246 -36.62917 -34.28212 -32.05921 -31.50284 -30.16834 -28.08658 -27.39299 -27.06836 -25.37083 -23.89477 -23.62843 -21.84131 -20.49452 -19.78338 -18.89637 -18.64610 -17.90735 -17.76554 -17.13381 -16.88191 -16.51226 -16.30351 -15.68363 -15.41008 -15.24625 -15.15098 -14.94600 -14.76566 -14.62531 -14.54345 -14.24803 -14.16365 -13.77595 -13.40988 -13.24527 -13.13619 -13.10400 -12.99952 -12.90496 -12.60891 -12.49938 -12.25773 -12.17009 -11.98778 -11.90848 -11.88589 -11.48574 -11.43666 -11.29666 -10.69686 -10.55140 -9.60433 -8.76061 -7.90163 -5.31563 1.48162 1.49893 1.49947 1.59379 1.89168 2.39691 2.52012 2.69475 3.09381 3.11684 3.24319 3.29751 3.61963 3.66329 3.92284 4.01488 4.05022 4.26200 4.29176 4.33259 4.40803 4.44867 4.52926 4.61137 4.63812 4.69649 4.70034 4.80804 4.84621 4.86409 4.95569 4.99299 5.03588 5.05834 5.13308 5.25679 5.28678 5.42151 5.57411 5.62357 5.68060 6.35861 6.41685 7.10388 7.11683 7.83053 8.36171 9.17388 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002916 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.082229 B = 9600.477925 C = 9664.111735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.598 5.598 3 C 0.528 3.472 4 O -0.584 6.584 5 C -0.094 4.094 6 C -0.142 4.142 7 C -0.143 4.143 8 C 0.258 3.742 9 F -0.176 7.176 10 F -0.198 7.198 11 C -0.141 4.141 12 C 0.154 3.846 13 C -0.125 4.125 14 C 0.181 3.819 15 N -0.607 5.607 16 C -0.265 4.265 17 H 0.072 0.928 18 C -0.049 4.049 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.285 1.285 22 H -0.299 1.299 23 H -0.265 1.265 24 C 0.142 3.858 25 C -0.121 4.121 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.133 0.867 35 H 0.118 0.882 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.055 0.945 39 H -0.012 1.012 40 H 0.054 0.946 41 H 0.250 0.750 42 H 0.005 0.995 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 20.565 5.120 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.329 5.329 3 C 0.316 3.684 4 O -0.464 6.464 5 C -0.097 4.097 6 C -0.199 4.199 7 C -0.181 4.181 8 C 0.222 3.778 9 F -0.157 7.157 10 F -0.179 7.179 11 C -0.179 4.179 12 C 0.050 3.950 13 C -0.165 4.165 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.394 4.394 17 H 0.090 0.910 18 C -0.245 4.245 19 N -0.579 5.579 20 Si 0.793 3.207 21 H -0.211 1.211 22 H -0.226 1.226 23 H -0.189 1.189 24 C 0.016 3.984 25 C -0.160 4.160 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.151 0.849 35 H 0.136 0.864 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.006 0.994 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.312 20.497 4.988 23.481 hybrid contribution 0.335 -0.950 -0.477 1.115 sum -9.977 19.547 4.511 22.405 Atomic orbital electron populations 1.22319 0.77461 1.04874 1.03360 1.47997 1.08413 1.04724 1.71727 1.20602 0.87114 0.85555 0.75112 1.90695 1.16242 1.87668 1.51771 1.21800 0.97657 0.91633 0.98643 1.21946 0.98633 1.05002 0.94274 1.24086 0.97474 0.96277 1.00305 1.21977 0.89308 0.87334 0.79164 1.92995 1.66997 1.74762 1.80931 1.93003 1.89550 1.89212 1.46116 1.24228 1.05428 0.91413 0.96829 1.20802 0.96123 0.82413 0.95649 1.22243 1.01186 0.96331 0.96748 1.20476 0.94173 0.90601 0.89264 1.44366 1.77929 1.10000 1.00770 1.19532 1.26346 0.87842 1.05723 0.91032 1.25770 0.97610 1.00614 1.00504 1.70262 1.26620 1.40942 1.20108 0.85290 0.78317 0.78749 0.78341 1.21126 1.22647 1.18949 1.21007 0.95763 0.92696 0.88922 1.22165 1.01420 0.95876 0.96556 0.90974 0.90131 0.88240 0.88850 0.89068 0.91901 0.87333 0.87385 0.84865 0.86401 0.91813 0.91072 0.92606 0.99370 0.92765 0.94118 0.97717 0.91787 0.90750 0.90438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.96 7.95 127.77 1.02 1.98 16 2 N -0.60 -14.71 2.76 -822.46 -2.27 -16.98 16 3 C 0.53 13.69 6.70 87.66 0.59 14.28 16 4 O -0.58 -20.80 15.45 -3.04 -0.05 -20.84 16 5 C -0.09 -1.59 0.70 -52.40 -0.04 -1.63 16 6 C -0.14 -1.80 8.69 71.98 0.63 -1.18 16 7 C -0.14 -2.53 6.71 31.18 0.21 -2.32 16 8 C 0.26 4.14 3.27 31.18 0.10 4.24 16 9 F -0.18 -2.84 15.48 44.97 0.70 -2.14 16 10 F -0.20 -3.92 17.41 44.97 0.78 -3.14 16 11 C -0.14 -1.80 5.65 31.12 0.18 -1.63 16 12 C 0.15 5.03 2.47 45.02 0.11 5.15 16 13 C -0.13 -4.57 5.34 30.67 0.16 -4.41 16 14 C 0.18 8.75 5.36 86.37 0.46 9.21 16 15 N -0.61 -29.95 2.99 -699.12 -2.09 -32.05 16 16 C -0.26 -14.22 9.55 84.03 0.80 -13.42 16 17 H 0.07 3.71 7.92 -2.91 -0.02 3.69 16 18 C -0.05 -2.71 4.76 84.86 0.40 -2.31 16 19 N -0.93 -55.45 11.51 21.65 0.25 -55.20 16 20 Si 0.96 43.95 29.61 68.60 2.03 45.98 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 22 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 24 C 0.14 5.77 6.51 86.36 0.56 6.33 16 25 C -0.12 -3.76 5.32 30.67 0.16 -3.59 16 26 H 0.07 0.99 7.12 -2.39 -0.02 0.97 16 27 H 0.08 1.32 6.47 -2.39 -0.02 1.30 16 28 H 0.10 0.95 4.46 -2.38 -0.01 0.94 16 29 H 0.09 0.90 5.14 -2.39 -0.01 0.89 16 30 H 0.09 0.97 6.14 -2.39 -0.01 0.96 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 2.26 7.68 -2.39 -0.02 2.24 16 33 H 0.11 1.69 8.10 -2.39 -0.02 1.67 16 34 H 0.13 0.95 7.14 -2.39 -0.02 0.93 16 35 H 0.12 1.57 8.09 -2.38 -0.02 1.55 16 36 H 0.06 2.53 6.91 -2.39 -0.02 2.52 16 37 H 0.07 2.43 7.72 -2.38 -0.02 2.41 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H 0.05 2.93 6.16 -2.39 -0.01 2.92 16 41 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 2.48 7.94 -2.39 -0.02 2.46 16 44 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 45 H 0.08 2.23 6.72 -2.39 -0.02 2.21 16 Total: -1.00 -69.57 348.26 5.70 -63.87 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.00 Total: 9.78 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.35 Total: 10.71 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -4.11 Total: -104.22 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.84 kcal Atomic # 9 Polarization: -6.76 SS G_CDS: 1.48 Total: -5.28 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -69.57 5.70 -63.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001006276151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.059 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds