Wall clock time and date at job start Tue Mar 31 2020 10:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48502 * 109.46808 * 239.99864 * 3 2 1 5 5 H 1.48505 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47312 * 119.99493 * 3 2 1 7 7 C 1.38812 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00308 * 197.35771 * 7 2 1 9 9 N 1.36935 * 119.99846 * 17.35849 * 7 2 1 10 10 C 1.46927 * 120.63466 * 27.67414 * 9 7 2 11 11 C 1.53187 * 108.77611 * 126.41264 * 10 9 7 12 12 C 1.53038 * 109.31745 * 54.63870 * 11 10 9 13 13 C 1.53048 * 109.53484 * 298.63499 * 12 11 10 14 14 H 1.08996 * 109.49429 * 301.37866 * 13 12 11 15 15 N 1.46503 * 109.49624 * 181.31435 * 13 12 11 16 16 C 1.34769 * 119.99683 * 155.00206 * 15 13 12 17 17 O 1.21283 * 120.00263 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99804 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.47403 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.81516 * 51.66439 * 19 18 16 21 21 C 1.54889 * 110.75925 * 175.00282 * 19 18 16 22 22 C 1.54260 * 104.19819 * 156.25670 * 21 19 18 23 23 C 1.53882 * 106.59802 * 336.38939 * 22 21 19 24 24 F 1.39901 * 110.03181 * 119.28406 * 23 22 21 25 25 F 1.39898 * 110.02859 * 240.71346 * 23 22 21 26 26 C 1.54261 * 106.59632 * 0.02562 * 23 22 21 27 27 C 1.46930 * 120.63034 * 207.69643 * 9 7 2 28 28 H 0.97001 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58499 * 6.62472 * 10 9 7 30 30 H 1.09000 * 109.70523 * 246.26898 * 10 9 7 31 31 H 1.09002 * 109.49884 * 294.68275 * 11 10 9 32 32 H 1.09004 * 109.52283 * 174.60748 * 11 10 9 33 33 H 1.09001 * 109.46547 * 178.61569 * 12 11 10 34 34 H 1.08998 * 109.44835 * 58.64241 * 12 11 10 35 35 H 0.96998 * 120.00004 * 335.00012 * 15 13 12 36 36 H 1.09007 * 109.47052 * 59.99927 * 18 16 15 37 37 H 1.08996 * 109.47517 * 299.99809 * 18 16 15 38 38 H 1.08994 * 110.48401 * 37.57764 * 21 19 18 39 39 H 1.09004 * 110.48342 * 274.93426 * 21 19 18 40 40 H 1.09003 * 110.03677 * 95.67187 * 22 21 19 41 41 H 1.08998 * 110.03479 * 217.10496 * 22 21 19 42 42 H 1.09003 * 110.48371 * 142.29113 * 26 23 22 43 43 H 1.08997 * 110.48349 * 264.79385 * 26 23 22 44 44 H 1.08998 * 109.58852 * 113.80290 * 27 9 7 45 45 H 1.09000 * 109.58655 * 353.37358 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2796 9 7 1.3722 -2.3612 -0.3528 10 6 0.2276 -2.3350 -1.2736 11 6 0.5004 -3.3056 -2.4269 12 6 0.8181 -4.6906 -1.8586 13 6 2.0738 -4.6105 -0.9874 14 1 2.9078 -4.2415 -1.5844 15 7 2.3952 -5.9426 -0.4693 16 6 3.6621 -6.2426 -0.1210 17 8 4.5362 -5.4099 -0.2370 18 6 3.9926 -7.6127 0.4126 19 6 5.4877 -7.6902 0.7281 20 1 5.7938 -6.8568 1.3604 21 6 5.8385 -9.0433 1.3953 22 6 7.3392 -9.2357 1.0944 23 6 7.6471 -8.3978 -0.1590 24 9 8.6059 -7.4237 0.1393 25 9 8.1087 -9.2262 -1.1876 26 6 6.3229 -7.7250 -0.5756 27 6 1.8189 -3.6546 0.1822 28 1 -0.4850 0.8401 -0.0004 29 1 0.0984 -1.3268 -1.6673 30 1 -0.6760 -2.6396 -0.7456 31 1 1.3490 -2.9483 -3.0102 32 1 -0.3801 -3.3680 -3.0665 33 1 0.9884 -5.3891 -2.6779 34 1 -0.0211 -5.0364 -1.2551 35 1 1.6961 -6.6087 -0.3768 36 1 3.7399 -8.3645 -0.3352 37 1 3.4192 -7.7969 1.3210 38 1 5.2541 -9.8498 0.9525 39 1 5.6684 -8.9936 2.4709 40 1 7.9368 -8.8833 1.9351 41 1 7.5494 -10.2876 0.9013 42 1 6.5065 -6.7138 -0.9387 43 1 5.8176 -8.3173 -1.3384 44 1 1.0465 -4.0684 0.8305 45 1 2.7397 -3.5172 0.7491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007457932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:02 Heat of formation + Delta-G solvation = -139.406146 kcal Electronic energy + Delta-G solvation = -27113.466511 eV Core-core repulsion = 22993.990819 eV Total energy + Delta-G solvation = -4119.475692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.04160 -47.11626 -39.90749 -37.99101 -37.00087 -34.29046 -32.48736 -31.47588 -30.45962 -29.05284 -28.51841 -25.85880 -25.27922 -22.29240 -22.04296 -21.22753 -20.77009 -20.02412 -19.27951 -17.78270 -17.09657 -16.77625 -16.68865 -16.22235 -15.61410 -15.16751 -14.74216 -14.69234 -14.48039 -14.03039 -13.97066 -13.67816 -13.51159 -13.45672 -13.24526 -12.93872 -12.56801 -12.40030 -12.34861 -12.03087 -11.91685 -11.83115 -11.54429 -11.35689 -11.07360 -10.96879 -10.86890 -10.79481 -10.76955 -10.27333 -10.24567 -9.93245 -9.90384 -9.63612 -9.45045 -8.81557 -8.39024 -6.67123 -5.77772 -3.19786 2.82866 3.31193 3.42192 3.46536 3.50018 3.56886 3.70915 3.95811 4.13429 4.52290 4.64863 4.72908 4.80859 4.87478 4.96072 5.10401 5.25617 5.28702 5.34473 5.38221 5.39615 5.46507 5.53840 5.55344 5.62964 5.68447 5.71808 5.90613 6.04960 6.07797 6.15923 6.23275 6.52461 6.60680 6.67572 6.68967 6.83610 6.99304 7.35519 7.64617 7.74654 7.83684 8.43018 8.49087 9.22923 9.85317 10.40775 11.30965 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002863 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.555712 B = 9777.517206 C =10608.939415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.724 5.724 16 C 0.506 3.494 17 O -0.534 6.534 18 C -0.133 4.133 19 C -0.074 4.074 20 H 0.097 0.903 21 C -0.118 4.118 22 C -0.163 4.163 23 C 0.279 3.721 24 F -0.198 7.198 25 F -0.203 7.203 26 C -0.156 4.156 27 C 0.143 3.857 28 H 0.254 0.746 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -21.973 0.157 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.375 5.375 16 C 0.291 3.709 17 O -0.410 6.410 18 C -0.173 4.173 19 C -0.093 4.093 20 H 0.116 0.884 21 C -0.155 4.155 22 C -0.201 4.201 23 C 0.242 3.758 24 F -0.179 7.179 25 F -0.185 7.185 26 C -0.194 4.194 27 C 0.016 3.984 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.123 0.877 43 H 0.111 0.889 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.306 -21.184 0.066 22.408 hybrid contribution 0.181 0.498 -0.066 0.534 sum 7.487 -20.686 -0.001 21.999 Atomic orbital electron populations 1.70031 1.05248 1.25614 1.54022 1.25015 0.95291 0.98396 1.00875 0.86350 0.78910 0.83162 0.78278 1.20952 1.21637 1.20825 1.19186 0.92814 0.84725 1.41386 0.91602 1.43990 1.35606 1.01078 1.50371 1.20835 0.88564 0.98580 0.87882 1.22180 1.00419 0.95237 1.00128 1.21673 0.96796 0.98540 0.98234 1.21738 0.97720 0.81451 0.97128 0.89680 1.46174 1.09278 1.15840 1.66163 1.20562 0.82706 0.89595 0.78010 1.90739 1.46818 1.50149 1.53328 1.21681 0.96975 0.95624 1.02980 1.21840 0.93245 0.98261 0.95980 0.88429 1.22432 0.93839 0.97439 1.01829 1.23159 0.99188 1.01241 0.96513 1.21899 0.86022 0.81575 0.86256 1.93029 1.67107 1.64212 1.93513 1.92997 1.90697 1.72856 1.61900 1.23439 0.92666 1.03770 0.99481 1.21173 0.97824 0.86825 0.92628 0.93608 0.89276 0.96336 0.92453 0.92752 0.93181 0.92297 0.77285 0.88837 0.88343 0.90392 0.89974 0.88743 0.88862 0.87700 0.88862 0.96608 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 22.16 29.59 -169.99 -5.03 17.13 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -7.11 9.59 -15.06 -0.14 -7.25 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.46 16 9 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 10 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.79 5.35 -26.69 -0.14 -1.94 16 13 C 0.13 2.18 2.61 -67.80 -0.18 2.00 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 15 N -0.72 -9.49 5.08 -53.68 -0.27 -9.77 16 16 C 0.51 6.80 7.63 -10.99 -0.08 6.72 16 17 O -0.53 -9.68 14.50 5.56 0.08 -9.59 16 18 C -0.13 -1.10 5.20 -27.88 -0.15 -1.25 16 19 C -0.07 -0.67 2.45 -88.64 -0.22 -0.89 16 20 H 0.10 1.08 7.88 -51.93 -0.41 0.67 16 21 C -0.12 -0.73 6.28 -25.08 -0.16 -0.89 16 22 C -0.16 -1.19 6.50 -25.61 -0.17 -1.36 16 23 C 0.28 2.93 2.57 -25.61 -0.07 2.86 16 24 F -0.20 -2.56 17.04 2.25 0.04 -2.53 16 25 F -0.20 -2.36 17.04 2.25 0.04 -2.32 16 26 C -0.16 -1.62 5.33 -25.09 -0.13 -1.75 16 27 C 0.14 3.09 6.09 -3.71 -0.02 3.06 16 28 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.09 2.36 6.04 -51.93 -0.31 2.05 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.39 3.80 8.60 -40.82 -0.35 3.45 16 36 H 0.09 0.57 7.99 -51.93 -0.41 0.15 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.37 8.05 -51.93 -0.42 -0.05 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.65 8.02 -51.93 -0.42 0.24 16 41 H 0.09 0.57 8.02 -51.93 -0.42 0.15 16 42 H 0.10 1.37 7.35 -51.93 -0.38 0.99 16 43 H 0.09 0.84 7.91 -51.93 -0.41 0.43 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -32.82 361.35 -8.59 -41.40 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.27 Total: 0.93 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -1.72 Total: 0.47 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: -0.17 Total: -50.95 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.59 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.08 Total: -4.84 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.03 Total: 17.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.82 -8.59 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.004 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds