Wall clock time and date at job start Tue Mar 31 2020 10:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48502 * 109.46808 * 239.99864 * 3 2 1 5 5 H 1.48505 * 109.46893 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47312 * 119.99493 * 3 2 1 7 7 C 1.38812 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00308 * 197.35771 * 7 2 1 9 9 N 1.36935 * 119.99846 * 17.35849 * 7 2 1 10 10 C 1.46927 * 120.63466 * 27.67414 * 9 7 2 11 11 C 1.53187 * 108.77611 * 126.41264 * 10 9 7 12 12 C 1.53038 * 109.31745 * 54.63870 * 11 10 9 13 13 C 1.53048 * 109.53484 * 298.63499 * 12 11 10 14 14 H 1.08996 * 109.49429 * 301.37866 * 13 12 11 15 15 N 1.46503 * 109.49624 * 181.31435 * 13 12 11 16 16 C 1.34769 * 119.99683 * 155.00206 * 15 13 12 17 17 O 1.21283 * 120.00263 * 359.97438 * 16 15 13 18 18 C 1.50700 * 119.99804 * 179.97438 * 16 15 13 19 19 C 1.53000 * 109.47403 * 179.97438 * 18 16 15 20 20 H 1.09002 * 110.81516 * 51.66439 * 19 18 16 21 21 C 1.54889 * 110.75925 * 175.00282 * 19 18 16 22 22 C 1.54260 * 104.19819 * 156.25670 * 21 19 18 23 23 C 1.53882 * 106.59802 * 336.38939 * 22 21 19 24 24 F 1.39901 * 110.03181 * 119.28406 * 23 22 21 25 25 F 1.39898 * 110.02859 * 240.71346 * 23 22 21 26 26 C 1.54261 * 106.59632 * 0.02562 * 23 22 21 27 27 C 1.46930 * 120.63034 * 207.69643 * 9 7 2 28 28 H 0.97001 * 119.99893 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.58499 * 6.62472 * 10 9 7 30 30 H 1.09000 * 109.70523 * 246.26898 * 10 9 7 31 31 H 1.09002 * 109.49884 * 294.68275 * 11 10 9 32 32 H 1.09004 * 109.52283 * 174.60748 * 11 10 9 33 33 H 1.09001 * 109.46547 * 178.61569 * 12 11 10 34 34 H 1.08998 * 109.44835 * 58.64241 * 12 11 10 35 35 H 0.96998 * 120.00004 * 335.00012 * 15 13 12 36 36 H 1.09007 * 109.47052 * 59.99927 * 18 16 15 37 37 H 1.08996 * 109.47517 * 299.99809 * 18 16 15 38 38 H 1.08994 * 110.48401 * 37.57764 * 21 19 18 39 39 H 1.09004 * 110.48342 * 274.93426 * 21 19 18 40 40 H 1.09003 * 110.03677 * 95.67187 * 22 21 19 41 41 H 1.08998 * 110.03479 * 217.10496 * 22 21 19 42 42 H 1.09003 * 110.48371 * 142.29113 * 26 23 22 43 43 H 1.08997 * 110.48349 * 264.79385 * 26 23 22 44 44 H 1.08998 * 109.58852 * 113.80290 * 27 9 7 45 45 H 1.09000 * 109.58655 * 353.37358 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0532 -1.2235 0.2796 9 7 1.3722 -2.3612 -0.3528 10 6 0.2276 -2.3350 -1.2736 11 6 0.5004 -3.3056 -2.4269 12 6 0.8181 -4.6906 -1.8586 13 6 2.0738 -4.6105 -0.9874 14 1 2.9078 -4.2415 -1.5844 15 7 2.3952 -5.9426 -0.4693 16 6 3.6621 -6.2426 -0.1210 17 8 4.5362 -5.4099 -0.2370 18 6 3.9926 -7.6127 0.4126 19 6 5.4877 -7.6902 0.7281 20 1 5.7938 -6.8568 1.3604 21 6 5.8385 -9.0433 1.3953 22 6 7.3392 -9.2357 1.0944 23 6 7.6471 -8.3978 -0.1590 24 9 8.6059 -7.4237 0.1393 25 9 8.1087 -9.2262 -1.1876 26 6 6.3229 -7.7250 -0.5756 27 6 1.8189 -3.6546 0.1822 28 1 -0.4850 0.8401 -0.0004 29 1 0.0984 -1.3268 -1.6673 30 1 -0.6760 -2.6396 -0.7456 31 1 1.3490 -2.9483 -3.0102 32 1 -0.3801 -3.3680 -3.0665 33 1 0.9884 -5.3891 -2.6779 34 1 -0.0211 -5.0364 -1.2551 35 1 1.6961 -6.6087 -0.3768 36 1 3.7399 -8.3645 -0.3352 37 1 3.4192 -7.7969 1.3210 38 1 5.2541 -9.8498 0.9525 39 1 5.6684 -8.9936 2.4709 40 1 7.9368 -8.8833 1.9351 41 1 7.5494 -10.2876 0.9013 42 1 6.5065 -6.7138 -0.9387 43 1 5.8176 -8.3173 -1.3384 44 1 1.0465 -4.0684 0.8305 45 1 2.7397 -3.5172 0.7491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007457932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:01 Heat of formation + Delta-G solvation = -160.341285 kcal Electronic energy + Delta-G solvation = -27114.374326 eV Core-core repulsion = 22993.990819 eV Total energy + Delta-G solvation = -4120.383508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.92699 -48.02570 -41.03502 -39.23165 -38.11851 -35.87140 -34.14066 -32.35691 -32.31917 -30.24408 -29.48884 -27.27665 -26.67525 -23.89835 -23.64866 -22.01392 -21.65379 -21.22808 -20.68601 -18.73324 -18.65229 -18.00251 -17.61342 -17.13347 -17.05719 -16.60252 -16.16724 -15.81515 -15.52062 -15.32373 -15.16738 -15.00878 -14.75182 -14.57890 -14.38010 -14.21290 -14.05167 -13.82769 -13.41997 -13.34337 -13.03919 -12.75776 -12.72087 -12.56376 -12.46141 -12.24594 -12.17197 -12.04625 -11.97507 -11.75250 -11.60417 -11.56393 -11.48514 -11.30279 -10.69769 -10.61712 -10.03458 -8.70768 -7.92654 -5.37861 1.42524 1.44807 1.52286 1.78195 2.25059 2.49967 2.80931 2.99363 3.21208 3.25282 3.41019 3.69177 3.84287 3.94882 4.03939 4.09320 4.13212 4.23223 4.26839 4.31257 4.47839 4.48255 4.57761 4.68478 4.72207 4.81581 4.81986 4.88130 4.91812 4.94068 5.02480 5.07479 5.12667 5.20554 5.25390 5.28328 5.39821 5.48670 5.61138 5.62508 5.75669 6.34842 6.72590 7.11032 7.44740 7.81424 8.30493 9.12711 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.018458 B = 0.002863 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.555712 B = 9777.517206 C =10608.939415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.043 4.043 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.278 1.278 7 C -0.271 4.271 8 H 0.051 0.949 9 N -0.608 5.608 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.141 3.859 14 H 0.051 0.949 15 N -0.711 5.711 16 C 0.498 3.502 17 O -0.589 6.589 18 C -0.119 4.119 19 C -0.076 4.076 20 H 0.067 0.933 21 C -0.104 4.104 22 C -0.158 4.158 23 C 0.265 3.735 24 F -0.219 7.219 25 F -0.211 7.211 26 C -0.156 4.156 27 C 0.146 3.854 28 H 0.253 0.747 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.417 0.583 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.110 0.890 44 H 0.022 0.978 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 -25.283 0.168 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.792 3.208 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.401 4.401 8 H 0.069 0.931 9 N -0.332 5.332 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.069 0.931 15 N -0.363 5.363 16 C 0.286 3.714 17 O -0.469 6.469 18 C -0.158 4.158 19 C -0.095 4.095 20 H 0.085 0.915 21 C -0.141 4.141 22 C -0.195 4.195 23 C 0.229 3.771 24 F -0.201 7.201 25 F -0.192 7.192 26 C -0.194 4.194 27 C 0.019 3.981 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.125 0.875 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.131 0.869 42 H 0.084 0.916 43 H 0.129 0.871 44 H 0.040 0.960 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.322 -24.559 0.080 25.360 hybrid contribution 0.523 1.543 -0.058 1.630 sum 6.844 -23.016 0.022 24.012 Atomic orbital electron populations 1.70155 1.06332 1.26111 1.54787 1.25699 0.96120 1.01152 1.00882 0.85400 0.77765 0.79426 0.78227 1.20680 1.21072 1.20423 1.19355 0.92565 0.86529 1.41642 0.93103 1.44225 1.36025 1.01629 1.51351 1.20714 0.87563 0.98147 0.88998 1.22021 1.01219 0.95579 0.98231 1.21597 0.96040 0.97357 0.99115 1.21168 0.97598 0.82709 0.95098 0.93073 1.45948 1.10211 1.14451 1.65701 1.21632 0.81848 0.91205 0.76696 1.90738 1.48423 1.52392 1.55374 1.21740 0.96532 0.92464 1.05093 1.21815 0.93594 0.99247 0.94873 0.91478 1.22438 0.92913 0.95966 1.02800 1.23199 1.00303 1.01517 0.94528 1.22404 0.85323 0.81735 0.87642 1.92983 1.68023 1.65366 1.93695 1.92975 1.90799 1.72915 1.62551 1.23427 0.93357 1.01789 1.00859 1.21222 0.96247 0.86429 0.94212 0.93795 0.92871 0.97578 0.93754 0.89764 0.89489 0.90438 0.74558 0.85097 0.85147 0.87546 0.88238 0.88616 0.86941 0.91620 0.87130 0.96005 0.95459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 11.19 21.65 0.24 -55.29 16 2 C -0.04 -2.46 4.91 84.86 0.42 -2.05 16 3 Si 0.96 46.77 29.59 68.60 2.03 48.80 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 7 C -0.27 -15.95 9.59 84.03 0.81 -15.15 16 8 H 0.05 3.07 7.89 -2.91 -0.02 3.04 16 9 N -0.61 -32.00 2.99 -699.09 -2.09 -34.09 16 10 C 0.17 8.21 5.31 86.36 0.46 8.67 16 11 C -0.13 -4.69 6.08 30.67 0.19 -4.50 16 12 C -0.10 -2.95 5.35 30.62 0.16 -2.78 16 13 C 0.14 4.83 2.61 45.07 0.12 4.95 16 14 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 15 N -0.71 -17.06 5.08 -442.15 -2.25 -19.31 16 16 C 0.50 12.78 7.63 87.66 0.67 13.45 16 17 O -0.59 -22.21 14.50 -3.04 -0.04 -22.25 16 18 C -0.12 -1.55 5.20 29.85 0.16 -1.39 16 19 C -0.08 -1.24 2.45 -9.51 -0.02 -1.26 16 20 H 0.07 1.51 7.88 -2.39 -0.02 1.49 16 21 C -0.10 -0.88 6.28 31.67 0.20 -0.68 16 22 C -0.16 -1.93 6.50 31.32 0.20 -1.72 16 23 C 0.26 5.44 2.57 31.32 0.08 5.52 16 24 F -0.22 -5.96 17.04 44.97 0.77 -5.19 16 25 F -0.21 -4.74 17.04 44.97 0.77 -3.97 16 26 C -0.16 -3.19 5.33 31.66 0.17 -3.02 16 27 C 0.15 6.43 6.09 86.36 0.53 6.96 16 28 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 29 H 0.05 2.91 6.04 -2.38 -0.01 2.90 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.42 6.28 8.60 -92.71 -0.80 5.48 16 36 H 0.13 0.83 7.99 -2.38 -0.02 0.81 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.11 0.38 8.05 -2.39 -0.02 0.36 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 1.15 8.02 -2.39 -0.02 1.14 16 41 H 0.11 0.97 8.02 -2.39 -0.02 0.95 16 42 H 0.06 1.86 7.35 -2.39 -0.02 1.84 16 43 H 0.11 1.79 7.91 -2.39 -0.02 1.77 16 44 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.03 1.32 7.93 -2.39 -0.02 1.31 16 Total: -1.00 -78.28 361.35 3.74 -74.54 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.19 Total: 9.78 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: 4.13 Total: 6.98 kcal Atomic # 7 Polarization: -104.59 SS G_CDS: -4.10 Total: -108.69 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.04 Total: -22.25 kcal Atomic # 9 Polarization: -10.69 SS G_CDS: 1.53 Total: -9.16 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -78.28 3.74 -74.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.802 kcal (2) G-P(sol) polarization free energy of solvation -78.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds