Wall clock time and date at job start Tue Mar 31 2020 10:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47382 * 270.00027 * 3 2 1 5 5 H 1.48501 * 109.47422 * 30.00139 * 3 2 1 6 6 H 1.48507 * 109.47426 * 149.99909 * 3 2 1 7 7 C 1.38814 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00038 * 197.36090 * 7 2 1 9 9 N 1.36936 * 119.99480 * 17.35591 * 7 2 1 10 10 C 1.46928 * 120.63286 * 27.68850 * 9 7 2 11 11 C 1.53182 * 108.77853 * 126.38651 * 10 9 7 12 12 C 1.53044 * 109.31506 * 54.63418 * 11 10 9 13 13 C 1.53043 * 109.53684 * 298.63847 * 12 11 10 14 14 H 1.09003 * 109.49526 * 301.41134 * 13 12 11 15 15 N 1.46494 * 109.49660 * 181.34921 * 13 12 11 16 16 C 1.34778 * 120.00424 * 154.99891 * 15 13 12 17 17 O 1.21288 * 119.99811 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00570 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47413 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.43294 * 307.54032 * 19 18 16 21 21 C 1.54268 * 110.48805 * 185.00293 * 19 18 16 22 22 C 1.53875 * 106.59720 * 217.71061 * 21 19 18 23 23 C 1.54274 * 106.59809 * 359.97438 * 22 21 19 24 24 F 1.39902 * 110.48341 * 142.28767 * 23 22 21 25 25 F 1.39897 * 110.48702 * 264.93297 * 23 22 21 26 26 C 1.54885 * 110.48770 * 70.22225 * 19 18 16 27 27 C 1.46931 * 120.63009 * 207.67917 * 9 7 2 28 28 H 0.97003 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58649 * 6.59756 * 10 9 7 30 30 H 1.08995 * 109.58546 * 246.17682 * 10 9 7 31 31 H 1.09010 * 109.50007 * 294.68260 * 11 10 9 32 32 H 1.08998 * 109.50422 * 174.58812 * 11 10 9 33 33 H 1.09001 * 109.45914 * 58.65452 * 12 11 10 34 34 H 1.09001 * 109.45969 * 178.61351 * 12 11 10 35 35 H 0.97002 * 119.99916 * 334.99506 * 15 13 12 36 36 H 1.08999 * 109.46668 * 299.99976 * 18 16 15 37 37 H 1.08998 * 109.46832 * 59.99634 * 18 16 15 38 38 H 1.08998 * 110.03103 * 336.99150 * 21 19 18 39 39 H 1.08995 * 110.03340 * 98.42318 * 21 19 18 40 40 H 1.09000 * 110.03085 * 119.28098 * 22 21 19 41 41 H 1.08998 * 110.03036 * 240.71621 * 22 21 19 42 42 H 1.09001 * 110.75927 * 274.93454 * 26 19 18 43 43 H 1.08995 * 110.75538 * 38.30972 * 26 19 18 44 44 H 1.08998 * 109.58259 * 113.82206 * 27 9 7 45 45 H 1.09004 * 109.58283 * 353.40424 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 0.2279 -2.3350 -1.2738 11 6 0.5010 -3.3052 -2.4273 12 6 0.8191 -4.6903 -1.8592 13 6 2.0747 -4.6101 -0.9878 14 1 2.9085 -4.2401 -1.5845 15 7 2.3968 -5.9423 -0.4706 16 6 3.6639 -6.2419 -0.1224 17 8 4.5376 -5.4086 -0.2378 18 6 3.9951 -7.6122 0.4102 19 6 5.4900 -7.6886 0.7269 20 1 6.0783 -7.3759 -0.1358 21 6 5.8786 -9.1186 1.1557 22 6 6.9249 -8.9730 2.2746 23 6 7.1360 -7.4595 2.4862 24 9 7.3104 -7.1747 3.8448 25 9 8.2344 -7.0100 1.7455 26 6 5.8277 -6.8168 1.9617 27 6 1.8194 -3.6546 0.1820 28 1 -0.4850 0.8401 0.0004 29 1 0.0985 -1.3267 -1.6673 30 1 -0.6742 -2.6414 -0.7444 31 1 1.3498 -2.9476 -3.0104 32 1 -0.3796 -3.3677 -3.0665 33 1 -0.0200 -5.0368 -1.2559 34 1 0.9897 -5.3885 -2.6787 35 1 1.6981 -6.6089 -0.3787 36 1 3.4217 -7.7973 1.3184 37 1 3.7430 -8.3635 -0.3382 38 1 5.0022 -9.6472 1.5306 39 1 6.3076 -9.6581 0.3113 40 1 6.5562 -9.4308 3.1925 41 1 7.8616 -9.4417 1.9731 42 1 5.9972 -5.7807 1.6684 43 1 5.0375 -6.8834 2.7094 44 1 1.0470 -4.0686 0.8301 45 1 2.7401 -3.5170 0.7491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007457938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:10 Heat of formation + Delta-G solvation = -138.782762 kcal Electronic energy + Delta-G solvation = -27234.531673 eV Core-core repulsion = 23115.083013 eV Total energy + Delta-G solvation = -4119.448660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.95085 -47.08969 -39.91252 -37.98662 -36.99257 -34.29059 -32.48527 -31.46892 -30.45936 -29.02369 -28.52810 -25.84974 -25.28024 -22.28459 -22.03021 -21.30498 -20.59934 -20.04246 -19.28005 -17.70457 -17.10518 -16.80212 -16.61964 -16.13689 -15.63434 -15.25541 -14.89615 -14.65136 -14.26930 -14.08931 -13.87243 -13.62549 -13.54523 -13.42141 -13.19172 -12.95971 -12.60303 -12.42465 -12.36583 -11.99860 -11.93522 -11.83924 -11.53605 -11.33928 -11.08310 -10.88031 -10.85313 -10.79043 -10.70502 -10.26645 -10.21399 -9.92862 -9.90244 -9.63190 -9.44592 -8.81541 -8.39354 -6.67221 -5.77662 -3.19799 2.82941 3.31507 3.41401 3.47885 3.50727 3.57038 3.73422 3.98052 4.16566 4.52517 4.68379 4.72991 4.82012 4.88183 5.02231 5.11784 5.25869 5.31140 5.36219 5.38287 5.40440 5.46778 5.53171 5.56612 5.62436 5.71709 5.75733 5.94212 6.06475 6.08163 6.15981 6.23201 6.52401 6.60544 6.67596 6.68853 6.83528 6.99298 7.35649 7.64500 7.74692 7.84248 8.43101 8.49168 9.23031 9.85309 10.40684 11.31037 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.003171 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.663117 B = 8828.063654 C =10172.102750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.125 3.875 14 H 0.085 0.915 15 N -0.724 5.724 16 C 0.506 3.494 17 O -0.534 6.534 18 C -0.133 4.133 19 C -0.075 4.075 20 H 0.094 0.906 21 C -0.118 4.118 22 C -0.160 4.160 23 C 0.275 3.725 24 F -0.200 7.200 25 F -0.194 7.194 26 C -0.153 4.153 27 C 0.143 3.857 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.019 0.981 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.394 0.606 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.096 0.904 44 H 0.016 0.984 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -21.991 0.614 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.020 3.980 14 H 0.103 0.897 15 N -0.375 5.375 16 C 0.291 3.709 17 O -0.410 6.410 18 C -0.173 4.173 19 C -0.094 4.094 20 H 0.113 0.887 21 C -0.156 4.156 22 C -0.198 4.198 23 C 0.239 3.761 24 F -0.181 7.181 25 F -0.175 7.175 26 C -0.191 4.191 27 C 0.015 3.985 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.227 0.773 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.034 0.966 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.048 -21.194 0.569 22.342 hybrid contribution 0.127 0.588 0.168 0.625 sum 7.175 -20.606 0.738 21.832 Atomic orbital electron populations 1.70041 1.05241 1.25486 1.54116 1.25017 0.95297 0.98394 1.00882 0.86273 0.79204 0.83496 0.77749 1.21392 1.21771 1.20338 1.19243 0.92844 0.84699 1.41242 0.91531 1.44004 1.35621 1.01084 1.50366 1.20842 0.88565 0.98585 0.87872 1.22183 1.00416 0.95237 1.00136 1.21672 0.96794 0.98539 0.98232 1.21733 0.97720 0.81453 0.97134 0.89671 1.46174 1.09279 1.15801 1.66207 1.20570 0.82705 0.89647 0.77969 1.90740 1.46853 1.50118 1.53291 1.21730 0.96962 0.95669 1.02931 1.21685 0.95394 0.93876 0.98418 0.88723 1.22194 0.98491 0.97084 0.97799 1.23110 1.02053 0.92865 1.01811 1.22004 0.85395 0.95397 0.73306 1.92998 1.96262 1.94990 1.33881 1.93013 1.56962 1.90967 1.76595 1.23555 0.94518 1.02514 0.98480 1.21172 0.97817 0.86830 0.92634 0.93666 0.89253 0.96336 0.92446 0.92748 0.92305 0.93177 0.77294 0.88663 0.88585 0.90319 0.90467 0.88636 0.89266 0.87635 0.88570 0.96615 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.36 11.19 55.49 0.62 -25.74 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 22.23 29.59 -169.99 -5.03 17.20 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.25 -7.09 9.59 -15.06 -0.14 -7.24 16 8 H 0.07 1.90 7.89 -52.49 -0.41 1.49 16 9 N -0.59 -14.96 3.00 -172.32 -0.52 -15.47 16 10 C 0.17 3.94 5.31 -3.71 -0.02 3.92 16 11 C -0.14 -2.59 6.08 -26.61 -0.16 -2.75 16 12 C -0.11 -1.79 5.35 -26.69 -0.14 -1.93 16 13 C 0.12 2.18 2.60 -67.82 -0.18 2.00 16 14 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 15 N -0.72 -9.49 5.08 -53.69 -0.27 -9.77 16 16 C 0.51 6.81 7.61 -10.99 -0.08 6.73 16 17 O -0.53 -9.69 14.39 5.55 0.08 -9.61 16 18 C -0.13 -1.11 5.05 -27.89 -0.14 -1.25 16 19 C -0.07 -0.69 2.45 -88.96 -0.22 -0.90 16 20 H 0.09 1.04 7.90 -51.93 -0.41 0.63 16 21 C -0.12 -0.74 6.37 -25.61 -0.16 -0.91 16 22 C -0.16 -1.18 6.41 -25.61 -0.16 -1.35 16 23 C 0.28 3.03 2.49 -25.06 -0.06 2.96 16 24 F -0.20 -2.51 17.16 2.25 0.04 -2.47 16 25 F -0.19 -2.56 17.17 2.25 0.04 -2.53 16 26 C -0.15 -1.70 5.34 -24.73 -0.13 -1.83 16 27 C 0.14 3.09 6.09 -3.71 -0.02 3.06 16 28 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.11 8.14 -51.92 -0.42 0.68 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.39 3.80 8.60 -40.82 -0.35 3.45 16 36 H 0.10 0.62 8.02 -51.93 -0.42 0.20 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.36 7.84 -51.93 -0.41 -0.05 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.10 0.58 8.11 -51.93 -0.42 0.16 16 41 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 42 H 0.11 1.49 7.29 -51.93 -0.38 1.11 16 43 H 0.10 0.95 7.96 -51.93 -0.41 0.54 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 1.33 7.93 -51.93 -0.41 0.92 16 LS Contribution 361.27 15.07 5.44 5.44 Total: -1.00 -32.90 361.27 -8.58 -41.48 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.27 Total: 0.96 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -1.72 Total: 0.50 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.17 Total: -50.98 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.08 Total: -9.61 kcal Atomic # 9 Polarization: -5.07 SS G_CDS: 0.08 Total: -4.99 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.90 -8.58 -41.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.300 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds