Wall clock time and date at job start Tue Mar 31 2020 10:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48505 * 109.47382 * 270.00027 * 3 2 1 5 5 H 1.48501 * 109.47422 * 30.00139 * 3 2 1 6 6 H 1.48507 * 109.47426 * 149.99909 * 3 2 1 7 7 C 1.38814 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00038 * 197.36090 * 7 2 1 9 9 N 1.36936 * 119.99480 * 17.35591 * 7 2 1 10 10 C 1.46928 * 120.63286 * 27.68850 * 9 7 2 11 11 C 1.53182 * 108.77853 * 126.38651 * 10 9 7 12 12 C 1.53044 * 109.31506 * 54.63418 * 11 10 9 13 13 C 1.53043 * 109.53684 * 298.63847 * 12 11 10 14 14 H 1.09003 * 109.49526 * 301.41134 * 13 12 11 15 15 N 1.46494 * 109.49660 * 181.34921 * 13 12 11 16 16 C 1.34778 * 120.00424 * 154.99891 * 15 13 12 17 17 O 1.21288 * 119.99811 * 359.97438 * 16 15 13 18 18 C 1.50699 * 120.00570 * 179.97438 * 16 15 13 19 19 C 1.52997 * 109.47413 * 180.02562 * 18 16 15 20 20 H 1.09004 * 110.43294 * 307.54032 * 19 18 16 21 21 C 1.54268 * 110.48805 * 185.00293 * 19 18 16 22 22 C 1.53875 * 106.59720 * 217.71061 * 21 19 18 23 23 C 1.54274 * 106.59809 * 359.97438 * 22 21 19 24 24 F 1.39902 * 110.48341 * 142.28767 * 23 22 21 25 25 F 1.39897 * 110.48702 * 264.93297 * 23 22 21 26 26 C 1.54885 * 110.48770 * 70.22225 * 19 18 16 27 27 C 1.46931 * 120.63009 * 207.67917 * 9 7 2 28 28 H 0.97003 * 119.99627 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.58649 * 6.59756 * 10 9 7 30 30 H 1.08995 * 109.58546 * 246.17682 * 10 9 7 31 31 H 1.09010 * 109.50007 * 294.68260 * 11 10 9 32 32 H 1.08998 * 109.50422 * 174.58812 * 11 10 9 33 33 H 1.09001 * 109.45914 * 58.65452 * 12 11 10 34 34 H 1.09001 * 109.45969 * 178.61351 * 12 11 10 35 35 H 0.97002 * 119.99916 * 334.99506 * 15 13 12 36 36 H 1.08999 * 109.46668 * 299.99976 * 18 16 15 37 37 H 1.08998 * 109.46832 * 59.99634 * 18 16 15 38 38 H 1.08998 * 110.03103 * 336.99150 * 21 19 18 39 39 H 1.08995 * 110.03340 * 98.42318 * 21 19 18 40 40 H 1.09000 * 110.03085 * 119.28098 * 22 21 19 41 41 H 1.08998 * 110.03036 * 240.71621 * 22 21 19 42 42 H 1.09001 * 110.75927 * 274.93454 * 26 19 18 43 43 H 1.08995 * 110.75538 * 38.30972 * 26 19 18 44 44 H 1.08998 * 109.58259 * 113.82206 * 27 9 7 45 45 H 1.09004 * 109.58283 * 353.40424 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0534 -1.2233 0.2796 9 7 1.3724 -2.3612 -0.3527 10 6 0.2279 -2.3350 -1.2738 11 6 0.5010 -3.3052 -2.4273 12 6 0.8191 -4.6903 -1.8592 13 6 2.0747 -4.6101 -0.9878 14 1 2.9085 -4.2401 -1.5845 15 7 2.3968 -5.9423 -0.4706 16 6 3.6639 -6.2419 -0.1224 17 8 4.5376 -5.4086 -0.2378 18 6 3.9951 -7.6122 0.4102 19 6 5.4900 -7.6886 0.7269 20 1 6.0783 -7.3759 -0.1358 21 6 5.8786 -9.1186 1.1557 22 6 6.9249 -8.9730 2.2746 23 6 7.1360 -7.4595 2.4862 24 9 7.3104 -7.1747 3.8448 25 9 8.2344 -7.0100 1.7455 26 6 5.8277 -6.8168 1.9617 27 6 1.8194 -3.6546 0.1820 28 1 -0.4850 0.8401 0.0004 29 1 0.0985 -1.3267 -1.6673 30 1 -0.6742 -2.6414 -0.7444 31 1 1.3498 -2.9476 -3.0104 32 1 -0.3796 -3.3677 -3.0665 33 1 -0.0200 -5.0368 -1.2559 34 1 0.9897 -5.3885 -2.6787 35 1 1.6981 -6.6089 -0.3787 36 1 3.4217 -7.7973 1.3184 37 1 3.7430 -8.3635 -0.3382 38 1 5.0022 -9.6472 1.5306 39 1 6.3076 -9.6581 0.3113 40 1 6.5562 -9.4308 3.1925 41 1 7.8616 -9.4417 1.9731 42 1 5.9972 -5.7807 1.6684 43 1 5.0375 -6.8834 2.7094 44 1 1.0470 -4.0686 0.8301 45 1 2.7401 -3.5170 0.7491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007457938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:09 Heat of formation + Delta-G solvation = -159.929900 kcal Electronic energy + Delta-G solvation = -27235.448682 eV Core-core repulsion = 23115.083013 eV Total energy + Delta-G solvation = -4120.365669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 316.170 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.88550 -48.04941 -41.04284 -39.24085 -38.12059 -35.87544 -34.14331 -32.35923 -32.32002 -30.24404 -29.50500 -27.28419 -26.68004 -23.90453 -23.63782 -22.15198 -21.52108 -21.20391 -20.67945 -18.73804 -18.62882 -18.02130 -17.61766 -17.12183 -17.01689 -16.62326 -16.21974 -15.76373 -15.73581 -15.26774 -15.15485 -14.87950 -14.81563 -14.53534 -14.38887 -14.21037 -14.02326 -13.87426 -13.45995 -13.39567 -13.05290 -12.78950 -12.67211 -12.58596 -12.52132 -12.24678 -12.14486 -12.09670 -11.98858 -11.75434 -11.56177 -11.49616 -11.42450 -11.30281 -10.68803 -10.62724 -10.03771 -8.71465 -7.93335 -5.38625 1.41833 1.42990 1.52461 1.78114 2.25017 2.49194 2.78010 2.96958 3.20314 3.25210 3.42767 3.68910 3.84419 3.95370 4.03766 4.09718 4.14088 4.25656 4.27681 4.33827 4.44273 4.47993 4.56844 4.67257 4.73312 4.81273 4.82850 4.86868 4.91906 4.97363 5.02348 5.05297 5.12734 5.20414 5.27757 5.28440 5.40171 5.48428 5.60916 5.62430 5.75416 6.34252 6.72593 7.10489 7.44844 7.80753 8.29699 9.12032 Molecular weight = 316.17amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.003171 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.663117 B = 8828.063654 C =10172.102750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.042 4.042 3 Si 0.964 3.036 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.050 0.950 9 N -0.609 5.609 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.141 3.859 14 H 0.051 0.949 15 N -0.711 5.711 16 C 0.497 3.503 17 O -0.590 6.590 18 C -0.119 4.119 19 C -0.074 4.074 20 H 0.068 0.932 21 C -0.106 4.106 22 C -0.152 4.152 23 C 0.259 3.741 24 F -0.213 7.213 25 F -0.214 7.214 26 C -0.157 4.157 27 C 0.146 3.854 28 H 0.253 0.747 29 H 0.053 0.947 30 H 0.006 0.994 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.417 0.583 36 H 0.126 0.874 37 H 0.137 0.863 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.022 0.978 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.539 -25.620 0.087 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.238 4.238 3 Si 0.791 3.209 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.400 4.400 8 H 0.068 0.932 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.171 4.171 12 C -0.141 4.141 13 C 0.034 3.966 14 H 0.070 0.930 15 N -0.363 5.363 16 C 0.286 3.714 17 O -0.469 6.469 18 C -0.159 4.159 19 C -0.093 4.093 20 H 0.087 0.913 21 C -0.143 4.143 22 C -0.190 4.190 23 C 0.223 3.777 24 F -0.194 7.194 25 F -0.195 7.195 26 C -0.195 4.195 27 C 0.019 3.981 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.255 0.745 36 H 0.144 0.856 37 H 0.155 0.845 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.133 0.867 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.127 0.873 44 H 0.039 0.961 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.086 -24.888 0.041 25.621 hybrid contribution 0.453 1.766 0.392 1.865 sum 6.538 -23.122 0.433 24.033 Atomic orbital electron populations 1.70161 1.06299 1.26019 1.54849 1.25688 0.96120 1.01107 1.00889 0.85333 0.77978 0.79735 0.77807 1.20803 1.21292 1.20228 1.19382 0.92519 0.86528 1.41536 0.93201 1.44236 1.36052 1.01610 1.51355 1.20722 0.87531 0.98169 0.88995 1.22023 1.01248 0.95566 0.98216 1.21597 0.95994 0.97372 0.99122 1.21162 0.97641 0.82696 0.95070 0.93035 1.45946 1.10206 1.14409 1.65737 1.21651 0.81858 0.91266 0.76653 1.90740 1.48487 1.52365 1.55355 1.21796 0.96409 0.92588 1.05059 1.21664 0.95873 0.95486 0.96326 0.91350 1.22200 0.99356 0.94869 0.97893 1.23157 1.03152 0.89307 1.03349 1.22566 0.84516 0.98184 0.72418 1.92965 1.96282 1.95335 1.34848 1.92969 1.57971 1.91510 1.77059 1.23557 0.95261 1.00622 1.00060 1.21220 0.96178 0.86468 0.94247 0.93800 0.92852 0.97596 0.93703 0.89731 0.90468 0.89395 0.74548 0.85605 0.84516 0.87089 0.88891 0.86678 0.88452 0.92093 0.87328 0.96057 0.95575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.61 11.19 21.65 0.24 -55.37 16 2 C -0.04 -2.44 4.91 84.86 0.42 -2.02 16 3 Si 0.96 47.03 29.59 68.60 2.03 49.06 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 7 C -0.27 -15.94 9.59 84.03 0.81 -15.14 16 8 H 0.05 3.04 7.89 -2.91 -0.02 3.02 16 9 N -0.61 -32.10 3.00 -699.11 -2.09 -34.19 16 10 C 0.17 8.21 5.31 86.36 0.46 8.67 16 11 C -0.13 -4.67 6.08 30.67 0.19 -4.49 16 12 C -0.10 -2.93 5.35 30.62 0.16 -2.76 16 13 C 0.14 4.83 2.60 45.07 0.12 4.95 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 15 N -0.71 -17.06 5.08 -442.17 -2.25 -19.31 16 16 C 0.50 12.81 7.61 87.66 0.67 13.47 16 17 O -0.59 -22.34 14.39 -3.05 -0.04 -22.39 16 18 C -0.12 -1.55 5.05 29.85 0.15 -1.40 16 19 C -0.07 -1.23 2.45 -9.72 -0.02 -1.25 16 20 H 0.07 1.50 7.90 -2.38 -0.02 1.48 16 21 C -0.11 -0.89 6.37 31.32 0.20 -0.69 16 22 C -0.15 -1.82 6.41 31.32 0.20 -1.62 16 23 C 0.26 5.67 2.49 31.68 0.08 5.75 16 24 F -0.21 -5.39 17.16 44.97 0.77 -4.61 16 25 F -0.21 -5.90 17.17 44.97 0.77 -5.13 16 26 C -0.16 -3.53 5.34 31.89 0.17 -3.36 16 27 C 0.15 6.46 6.09 86.36 0.53 6.99 16 28 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.05 2.93 6.04 -2.39 -0.01 2.91 16 30 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.42 6.26 8.60 -92.71 -0.80 5.46 16 36 H 0.13 0.98 8.02 -2.39 -0.02 0.96 16 37 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.11 0.30 7.84 -2.39 -0.02 0.28 16 39 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.11 0.96 8.11 -2.39 -0.02 0.94 16 41 H 0.10 1.04 8.12 -2.39 -0.02 1.02 16 42 H 0.06 1.90 7.29 -2.39 -0.02 1.89 16 43 H 0.11 2.08 7.96 -2.39 -0.02 2.06 16 44 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.03 1.28 7.93 -2.38 -0.02 1.26 16 Total: -1.00 -79.19 361.27 3.74 -75.45 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.19 Total: 9.39 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.12 Total: 7.10 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.10 Total: -108.87 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.04 Total: -22.39 kcal Atomic # 9 Polarization: -11.29 SS G_CDS: 1.54 Total: -9.74 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -79.19 3.74 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007457938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.483 kcal (2) G-P(sol) polarization free energy of solvation -79.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds